ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
2dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
3gb|AY103884.1| Zea mays PCO090977 mRNA sequence 196 5e-47
4gb|BT016671.1| Zea mays clone Contig504 mRNA sequence 168 1e-38
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
6dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
7dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D... 153 7e-34
8dbj|D10422.1|RIC480 Oryza sativa mRNA for F1-ATPase (480 gene), ... 48 0.029
9gb|AC159336.13| Mus musculus 10 BAC RP24-430N21 (Roswell Park Ca... 46 0.11
10gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Canc... 46 0.11
11gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell ... 44 0.45
12gb|AY217336.1| Papaver somniferum S-adenosyl-L-methionine:coclau... 42 1.8
13ref|XM_686143.1| PREDICTED: Danio rerio similar to Heparin sulfa... 42 1.8
14gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosom... 42 1.8
15gb|AC154659.2| Mus musculus BAC clone RP24-269K6 from chromosome... 42 1.8
16emb|BX649358.3| Zebrafish DNA sequence from clone CH211-69P6 in ... 42 1.8
17emb|BX247881.6| Zebrafish DNA sequence from clone DKEY-10M1 in l... 42 1.8
18gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, com... 42 1.8
19dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.8
20dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.8
21gb|AY441091.1| Armigeres subalbatus ASAP ID: 39599 putative: c-t... 40 7.0
22gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delt... 40 7.0
23gb|AC124557.4| Mus musculus BAC clone RP23-247H15 from chromosom... 40 7.0
24emb|AL158064.16| Human DNA sequence from clone RP11-470M1 on chr... 40 7.0
25gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 7.0
26emb|AL139148.12| Human DNA sequence from clone RP4-630J13 on chr... 40 7.0
27emb|AL669827.5| Mouse DNA sequence from clone RP23-350D17 on chr... 40 7.0
28emb|BX004866.22| Mouse DNA sequence from clone RP23-360A7 on chr... 40 7.0
29gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, co... 40 7.0
30gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 7.0
31gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, comp... 40 7.0
32gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, compl... 40 7.0
33ref|XM_688792.1| PREDICTED: Danio rerio similar to bloodthirsty ... 40 7.0
34dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
35gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, co... 40 7.0
36gb|AC131943.1| Homo sapiens BAC clone CTD-2242C10 from 4, comple... 40 7.0
37gb|AC007744.2| Homo sapiens BAC clone RP11-482H16 from 2, comple... 40 7.0
38gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Ca... 40 7.0
39emb|AL929191.9| Mouse DNA sequence from clone RP23-330G15 on chr... 40 7.0
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
41emb|AL928919.12| Mouse DNA sequence from clone RP24-239N23 on ch... 40 7.0
42emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.0
43gb|AC133940.4| Mus musculus BAC clone RP23-433D1 from 16, comple... 40 7.0
44ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 40 7.0
45dbj|AP000864.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.0 
>dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I24, full
            insert sequence
          Length = 2362

 Score =  236 bits (119), Expect = 6e-59
 Identities = 188/211 (89%)
 Strand = Plus / Minus

                                                                        
Query: 305  cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 364
            |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 2192 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 2133

                                                                        
Query: 365  tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 424
            ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 2132 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 2073

                                                                        
Query: 425  ccatgatactctggtcaatcttttgttcaaccaagatggttttgtttttcccaaggatat 484
            ||||||| || | ||||||||| ||||||| |||||| |||||||| |||||||| ||||
Sbjct: 2072 ccatgatgctgtagtcaatcttctgttcaatcaagatagttttgttcttcccaagaatat 2013

                                           
Query: 485  ctcgcaaggtctccttaagttctttctcctc 515
            || ||||||||||||||||||| ||||||||
Sbjct: 2012 cttgcaaggtctccttaagttccttctcctc 1982



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 184  cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 243
            ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 2301 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 2244

                                    
Query: 244  cacatcgaagaagcagacatgagg 267
            || ||| ||| | |||||||||||
Sbjct: 2243 catatcaaagtaacagacatgagg 2220
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>dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086I22, full
           insert sequence
          Length = 1044

 Score =  236 bits (119), Expect = 6e-59
 Identities = 188/211 (89%)
 Strand = Plus / Minus

                                                                       
Query: 305 cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 364
           |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 838 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 779

                                                                       
Query: 365 tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 424
           ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 778 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 719

                                                                       
Query: 425 ccatgatactctggtcaatcttttgttcaaccaagatggttttgtttttcccaaggatat 484
           ||||||| || | ||||||||| ||||||| |||||| |||||||| |||||||| ||||
Sbjct: 718 ccatgatgctgtagtcaatcttctgttcaatcaagatagttttgttcttcccaagaatat 659

                                          
Query: 485 ctcgcaaggtctccttaagttctttctcctc 515
           || ||||||||||||||||||| ||||||||
Sbjct: 658 cttgcaaggtctccttaagttccttctcctc 628



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                       
Query: 184 cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 243
           ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 947 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 890

                                   
Query: 244 cacatcgaagaagcagacatgagg 267
           || ||| ||| | |||||||||||
Sbjct: 889 catatcaaagtaacagacatgagg 866
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>gb|AY103884.1| Zea mays PCO090977 mRNA sequence
          Length = 1134

 Score =  196 bits (99), Expect = 5e-47
 Identities = 180/207 (86%)
 Strand = Plus / Minus

                                                                       
Query: 311 atccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgcttcgccc 370
           |||| |||||| |||| | |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 836 atccaaaaggctgttagaagtcaagtggttgcctcaagaacgcctccatttgcttcgccc 777

                                                                       
Query: 371 tagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctcccatga 430
           |  ||||||| || || |||| |||| ||||||| ||||||||||| | |||||||||||
Sbjct: 776 tgttcctgattgagatatcaagcaccttctgcccgaattcaatcactaatcctcccatga 717

                                                                       
Query: 431 tactctggtcaatcttttgttcaaccaagatggttttgtttttcccaaggatatctcgca 490
           | || | ||||||||| ||||||||||| || |||||||||| ||||||||||||  |||
Sbjct: 716 tgctgtagtcaatcttctgttcaaccaaaatagttttgttttccccaaggatatcctgca 657

                                      
Query: 491 aggtctccttaagttctttctcctcct 517
           |||| ||||| ||||||||||||||||
Sbjct: 656 aggtttccttgagttctttctcctcct 630
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>gb|BT016671.1| Zea mays clone Contig504 mRNA sequence
          Length = 1081

 Score =  168 bits (85), Expect = 1e-38
 Identities = 164/189 (86%), Gaps = 1/189 (0%)
 Strand = Plus / Minus

                                                                       
Query: 330 gtcaaggggttgcctcaagaacgactccatttgcttcgccctagtcctgatcgac-atgt 388
           |||||| |||||||||||||||| ||||||||| ||||||||  ||||||| ||  || |
Sbjct: 775 gtcaagtggttgcctcaagaacgcctccatttggttcgccctgttcctgattgaggatat 716

                                                                       
Query: 389 caaacaccctctgcccaaattcaatcaccagtcctcccatgatactctggtcaatctttt 448
           ||| |||| ||||||| ||||||||||| | |||||||||||| || | ||||||||| |
Sbjct: 715 caagcaccttctgcccgaattcaatcactaatcctcccatgatgctgtagtcaatcttct 656

                                                                       
Query: 449 gttcaaccaagatggttttgtttttcccaaggatatctcgcaaggtctccttaagttctt 508
           |||||||||| || |||||||||| ||||||||||||  ||||||| ||||| |||||||
Sbjct: 655 gttcaaccaaaatagttttgttttccccaaggatatcctgcaaggtttccttgagttctt 596

                    
Query: 509 tctcctcct 517
           |||||||||
Sbjct: 595 tctcctcct 587
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  153 bits (77), Expect = 7e-34
 Identities = 125/141 (88%)
 Strand = Plus / Minus

                                                                            
Query: 305      cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 364
                |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 26026981 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 26026922

                                                                            
Query: 365      tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 424
                ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 26026921 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 26026862

                                     
Query: 425      ccatgatactctggtcaatct 445
                ||||||| || | ||||||||
Sbjct: 26026861 ccatgatgctgtagtcaatct 26026841



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                            
Query: 448      tgttcaaccaagatggttttgtttttcccaaggatatctcgcaaggtctccttaagttct 507
                ||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||| 
Sbjct: 26026757 tgttcaatcaagatagttttgttcttcccaagaatatcttgcaaggtctccttaagttcc 26026698

                        
Query: 508      ttctcctc 515
                ||||||||
Sbjct: 26026697 ttctcctc 26026690



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                            
Query: 184      cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 243
                ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 26027090 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 26027033

                                        
Query: 244      cacatcgaagaagcagacatgagg 267
                || ||| ||| | |||||||||||
Sbjct: 26027032 catatcaaagtaacagacatgagg 26027009
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>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score =  153 bits (77), Expect = 7e-34
 Identities = 125/141 (88%)
 Strand = Plus / Minus

                                                                         
Query: 305   cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 364
             |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 64839 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 64780

                                                                         
Query: 365   tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 424
             ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 64779 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 64720

                                  
Query: 425   ccatgatactctggtcaatct 445
             ||||||| || | ||||||||
Sbjct: 64719 ccatgatgctgtagtcaatct 64699



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                         
Query: 448   tgttcaaccaagatggttttgtttttcccaaggatatctcgcaaggtctccttaagttct 507
             ||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||| 
Sbjct: 64615 tgttcaatcaagatagttttgttcttcccaagaatatcttgcaaggtctccttaagttcc 64556

                     
Query: 508   ttctcctc 515
             ||||||||
Sbjct: 64555 ttctcctc 64548



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                         
Query: 184   cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 243
             ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 64948 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 64891

                                     
Query: 244   cacatcgaagaagcagacatgagg 267
             || ||| ||| | |||||||||||
Sbjct: 64890 catatcaaagtaacagacatgagg 64867
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>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062J02
          Length = 151636

 Score =  153 bits (77), Expect = 7e-34
 Identities = 125/141 (88%)
 Strand = Plus / Minus

                                                                        
Query: 305  cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 364
            |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 6226 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 6167

                                                                        
Query: 365  tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 424
            ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 6166 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 6107

                                 
Query: 425  ccatgatactctggtcaatct 445
            ||||||| || | ||||||||
Sbjct: 6106 ccatgatgctgtagtcaatct 6086



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 448  tgttcaaccaagatggttttgtttttcccaaggatatctcgcaaggtctccttaagttct 507
            ||||||| |||||| |||||||| |||||||| |||||| ||||||||||||||||||| 
Sbjct: 6002 tgttcaatcaagatagttttgttcttcccaagaatatcttgcaaggtctccttaagttcc 5943

                    
Query: 508  ttctcctc 515
            ||||||||
Sbjct: 5942 ttctcctc 5935



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 184  cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 243
            ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 6335 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 6278

                                    
Query: 244  cacatcgaagaagcagacatgagg 267
            || ||| ||| | |||||||||||
Sbjct: 6277 catatcaaagtaacagacatgagg 6254
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>dbj|D10422.1|RIC480 Oryza sativa mRNA for F1-ATPase (480 gene), partial sequence
          Length = 490

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 472 ttcccaaggatatctcgcaaggtctccttaagttctttctcctc 515
           |||||||| |||||| | ||||||||||||||| | ||||||||
Sbjct: 228 ttcccaagaatatcttggaaggtctccttaagtgccttctcctc 185
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>gb|AC159336.13| Mus musculus 10 BAC RP24-430N21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 180454

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 213    ctcttgtaaaggaaagcttttatttca 239
              ||||||||||||||||| |||||||||
Sbjct: 134324 ctcttgtaaaggaaagcatttatttca 134350
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>gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 222518

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 213   ctcttgtaaaggaaagcttttatttca 239
             ||||||||||||||||| |||||||||
Sbjct: 27155 ctcttgtaaaggaaagcatttatttca 27181
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>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 173810

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 67     caaaggaaaattacagacactt 88
              ||||||||||||||||||||||
Sbjct: 129602 caaaggaaaattacagacactt 129581
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>gb|AY217336.1| Papaver somniferum S-adenosyl-L-methionine:coclaurine
           N-methyltransferase mRNA, complete cds
          Length = 1286

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 118 atgtttttatccatgtttttc 138
           |||||||||||||||||||||
Sbjct: 968 atgtttttatccatgtttttc 948
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>ref|XM_686143.1| PREDICTED: Danio rerio similar to Heparin sulfate
            N-deacetylase/N-sulfotransferase (N-HSST) (N-heparin
            sulfate sulfotransferase) (Glucosaminyl
            N-deacetylase/N-sulfotransferase) (LOC562765), mRNA
          Length = 3737

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 81   agacacttgaattaaaaactttcca 105
            ||||||||||||||||| |||||||
Sbjct: 3258 agacacttgaattaaaagctttcca 3234
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>gb|AC154177.2| Mus musculus BAC clone RP23-465J20 from chromosome 17, complete sequence
          Length = 206481

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 494    tctccttaagttctttctcct 514
              |||||||||||||||||||||
Sbjct: 148893 tctccttaagttctttctcct 148913
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>gb|AC154659.2| Mus musculus BAC clone RP24-269K6 from chromosome 17, complete sequence
          Length = 177071

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 210   gttctcttgtaaaggaaagct 230
             |||||||||||||||||||||
Sbjct: 62503 gttctcttgtaaaggaaagct 62523
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>emb|BX649358.3| Zebrafish DNA sequence from clone CH211-69P6 in linkage group 13,
            complete sequence
          Length = 181307

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 81   agacacttgaattaaaaactttcca 105
            ||||||||||||||||| |||||||
Sbjct: 8187 agacacttgaattaaaagctttcca 8211
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>emb|BX247881.6| Zebrafish DNA sequence from clone DKEY-10M1 in linkage group 13,
            complete sequence
          Length = 219382

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 81   agacacttgaattaaaaactttcca 105
            ||||||||||||||||| |||||||
Sbjct: 7880 agacacttgaattaaaagctttcca 7904
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>gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, complete sequence
          Length = 175751

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 494   tctccttaagttctttctcct 514
             |||||||||||||||||||||
Sbjct: 91396 tctccttaagttctttctcct 91376
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>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 467   tgtttttcccaaggatatctc 487
             |||||||||||||||||||||
Sbjct: 56199 tgtttttcccaaggatatctc 56219
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>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177,
              complete sequence
          Length = 133589

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 467    tgtttttcccaaggatatctc 487
              |||||||||||||||||||||
Sbjct: 128810 tgtttttcccaaggatatctc 128790
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>gb|AY441091.1| Armigeres subalbatus ASAP ID: 39599 putative: c-type lectin mRNA
           sequence
          Length = 613

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 465 tttgtttttcccaaggatatctcg 488
           |||||||||| |||||||||||||
Sbjct: 140 tttgtttttcgcaaggatatctcg 117
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>gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delta locus from bases 752679 to
             1000555 (section 4 of 5) of the Complete Nucleotide
             Sequence
          Length = 247877

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aatagcacttcaaaggaaaa 76
             ||||||||||||||||||||
Sbjct: 53171 aatagcacttcaaaggaaaa 53152
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>gb|AC124557.4| Mus musculus BAC clone RP23-247H15 from chromosome 19, complete
             sequence
          Length = 178544

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aggaaaattacagacacttg 89
             ||||||||||||||||||||
Sbjct: 57963 aggaaaattacagacacttg 57944
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>emb|AL158064.16| Human DNA sequence from clone RP11-470M1 on chromosome 13, complete
              sequence
          Length = 160587

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    aaggaaagcttttatttcaa 240
              ||||||||||||||||||||
Sbjct: 144253 aaggaaagcttttatttcaa 144234
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 236     ttcaagaccacatcgaagaa 255
               ||||||||||||||||||||
Sbjct: 1754831 ttcaagaccacatcgaagaa 1754812
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>emb|AL139148.12| Human DNA sequence from clone RP4-630J13 on chromosome 1p12-13.3
             Contains a high density lipoprotein binding protein
             (vigilin) (HDLBP) pseudogene, complete sequence
          Length = 92514

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tctcctcatgtttttatcca 130
             ||||||||||||||||||||
Sbjct: 53874 tctcctcatgtttttatcca 53855
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>emb|AL669827.5| Mouse DNA sequence from clone RP23-350D17 on chromosome 11 Contains a
             PDZ domain containing guanine (Pdzgef1) pseudogene, a
             tubulin alpha 4 (Tuba4) pseudogene , an olfactory receptor
             pseudogene, a novel pseudogene and the 3' end of a novel
             gene, complete sequence
          Length = 108424

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 498   cttaagttctttctcctcct 517
             ||||||||||||||||||||
Sbjct: 73833 cttaagttctttctcctcct 73814
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>emb|BX004866.22| Mouse DNA sequence from clone RP23-360A7 on chromosome 4 Contains a
              ribosomal protein 7a (Rpl7a) pseudogene, complete sequence
          Length = 161600

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     actttccatgacctctcctc 117
              ||||||||||||||||||||
Sbjct: 104488 actttccatgacctctcctc 104507
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>gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, complete sequence
          Length = 155985

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    tccttaagttctttctcctc 515
              ||||||||||||||||||||
Sbjct: 108376 tccttaagttctttctcctc 108357
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 496     tccttaagttctttctcctc 515
               ||||||||||||||||||||
Sbjct: 1748625 tccttaagttctttctcctc 1748606
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>gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, complete sequence
          Length = 159629

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     ctgaatacgaggggaaaata 60
              ||||||||||||||||||||
Sbjct: 134617 ctgaatacgaggggaaaata 134636
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>gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, complete sequence
          Length = 195568

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    ctgaatacgaggggaaaata 60
             ||||||||||||||||||||
Sbjct: 78336 ctgaatacgaggggaaaata 78355
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>ref|XM_688792.1| PREDICTED: Danio rerio similar to bloodthirsty (LOC565512), mRNA
          Length = 2178

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 accacatcgaagaagcagac 261
           ||||||||||||||||||||
Sbjct: 341 accacatcgaagaagcagac 322
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      agcacttcaaaggaaaatta 79
               ||||||||||||||||||||
Sbjct: 2393624 agcacttcaaaggaaaatta 2393605
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>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence
          Length = 128950

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 60     agcacttcaaaggaaaattacaga 83
              |||||||||||||||||| |||||
Sbjct: 114012 agcacttcaaaggaaaataacaga 113989
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>gb|AC131943.1| Homo sapiens BAC clone CTD-2242C10 from 4, complete sequence
          Length = 135585

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   cgaagaagcagacatgaggg 268
             ||||||||||||||||||||
Sbjct: 93455 cgaagaagcagacatgaggg 93436
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>gb|AC007744.2| Homo sapiens BAC clone RP11-482H16 from 2, complete sequence
          Length = 199218

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    atgtttttatccatgttttt 137
              ||||||||||||||||||||
Sbjct: 194816 atgtttttatccatgttttt 194797
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>gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188972

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    gtaaaggaaagcttttattt 237
              ||||||||||||||||||||
Sbjct: 143151 gtaaaggaaagcttttattt 143132
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>emb|AL929191.9| Mouse DNA sequence from clone RP23-330G15 on chromosome 2, complete
              sequence
          Length = 192196

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 213    ctcttgtaaaggaaagcttttatt 236
              ||||||||||||||||| ||||||
Sbjct: 165500 ctcttgtaaaggaaagcatttatt 165523
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      agcacttcaaaggaaaatta 79
               ||||||||||||||||||||
Sbjct: 2393568 agcacttcaaaggaaaatta 2393549
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>emb|AL928919.12| Mouse DNA sequence from clone RP24-239N23 on chromosome 4, complete
             sequence
          Length = 141866

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 60    agcacttcaaaggaaaattacaga 83
             |||||||||||||||||| |||||
Sbjct: 73027 agcacttcaaaggaaaataacaga 73004
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>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 156258

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     agcacttcaaaggaaaatta 79
              ||||||||||||||||||||
Sbjct: 118815 agcacttcaaaggaaaatta 118796
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>gb|AC133940.4| Mus musculus BAC clone RP23-433D1 from 16, complete sequence
          Length = 172079

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     aaattacagacacttgaattaaaa 97
              ||||||||||||||||| ||||||
Sbjct: 103111 aaattacagacacttgacttaaaa 103088
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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     aatagcacttcaaaggaaaa 76
              ||||||||||||||||||||
Sbjct: 805849 aatagcacttcaaaggaaaa 805830
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>dbj|AP000864.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-674N23, complete
             sequence
          Length = 171200

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   catgtttttcggtagaaatgaaat 152
             |||||||||||| |||||||||||
Sbjct: 54816 catgtttttcggaagaaatgaaat 54839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,321,819
Number of Sequences: 3902068
Number of extensions: 7321819
Number of successful extensions: 159438
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159155
Number of HSP's gapped (non-prelim): 277
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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