ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart12h12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474454.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1017 Score = 129 bits (65), Expect = 9e-27 Identities = 106/117 (90%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 886 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 828 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctgg 441 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 827 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctgg 771 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 129 bits (65), Expect = 9e-27 Identities = 106/117 (90%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 72398 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 72340 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctgg 441 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 72339 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctgg 72283 Score = 119 bits (60), Expect = 9e-24 Identities = 104/116 (89%), Gaps = 2/116 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||| ||| ||||| | |||| |||||||||| ||| Sbjct: 75705 ccatggacttggcgaactgcgtgaagaatgcggccttg-tccgcggcgaactgcctgacg 75647 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 || ||||||||| | ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 75646 attggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaacaccccctg 75591 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 82498 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 82439 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 82438 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 82396 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 75769 ctgaagcagctgcggcggatctcgccgacgtt 75738 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 72462 ctgaagcagctgcggcggatctcgccgacgtt 72431
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 129 bits (65), Expect = 9e-27 Identities = 106/117 (90%), Gaps = 2/117 (1%) Strand = Plus / Plus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 35280836 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 35280894 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctgg 441 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 35280895 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctgg 35280951 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Plus Query: 264 gaagcagctgcgacggatctcacccacgttgccgccgggccggggcgcggtggcgagctc 323 |||||||||||| |||||||| || ||||| |||||||||| ||| | || ||||| Sbjct: 35250654 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 35250713 Query: 324 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 383 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 35250714 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 35250773 Query: 384 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 442 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 35250774 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 35250832 Score = 103 bits (52), Expect = 5e-19 Identities = 102/116 (87%), Gaps = 2/116 (1%) Strand = Plus / Plus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||||||| ||| Sbjct: 35258122 ccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaactgcctgacg 35258180 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 || ||||||||| | |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 35258181 attggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccccctg 35258236 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 35242602 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 35242661 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 35242662 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 35242704 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaag 354 ||||||| ||||||||||||||||||||| Sbjct: 20964319 ccatggacttggcgaactgcgcgaagaag 20964291 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 35280772 ctgaagcagctgcggcggatctcgccgacgtt 35280803 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 35258058 ctgaagcagctgcggcggatctcgccgacgtt 35258089
>dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A01, full insert sequence Length = 1240 Score = 129 bits (65), Expect = 9e-27 Identities = 106/117 (90%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 952 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 894 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctgg 441 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 893 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctgg 837 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 1016 ctgaagcagctgcggcggatctcgccgacgtt 985
>tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx64 gene for class III peroxidase 64 precursor, exons 1-2 Length = 1091 Score = 129 bits (65), Expect = 9e-27 Identities = 106/117 (90%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 960 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 902 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctgg 441 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 901 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctgg 845 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 1024 ctgaagcagctgcggcggatctcgccgacgtt 993
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 129 bits (65), Expect = 9e-27 Identities = 106/117 (90%), Gaps = 2/117 (1%) Strand = Plus / Plus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||||||| ||||| | || | |||||||||| ||| Sbjct: 76681 ccatggacttggcgaactgcgtgaagaaggcggccttg-tccgtggcgaactgcctgacg 76739 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctgg 441 |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 76740 atgggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaagacgccctgg 76796 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Plus Query: 264 gaagcagctgcgacggatctcacccacgttgccgccgggccggggcgcggtggcgagctc 323 |||||||||||| |||||||| || ||||| |||||||||| ||| | || ||||| Sbjct: 46499 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 46558 Query: 324 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 383 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 46559 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 46618 Query: 384 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 442 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 46619 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 46677 Score = 103 bits (52), Expect = 5e-19 Identities = 102/116 (87%), Gaps = 2/116 (1%) Strand = Plus / Plus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||||||| ||| Sbjct: 53967 ccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaactgcctgacg 54025 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 || ||||||||| | |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 54026 attggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccccctg 54081 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 38447 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 38506 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 38507 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 38549 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 76617 ctgaagcagctgcggcggatctcgccgacgtt 76648 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 53903 ctgaagcagctgcggcggatctcgccgacgtt 53934
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 119 bits (60), Expect = 9e-24 Identities = 104/116 (89%), Gaps = 2/116 (1%) Strand = Plus / Plus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| ||||||||||||| |||||| ||| ||||| | |||| |||||||||| ||| Sbjct: 81342 ccatggacttggcgaactgcgtgaagaatgcggccttg-tccgcggcgaactgcctgacg 81400 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 || ||||||||| | ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 81401 attggcgccgtgatccggtccttgatgagcgccatgtcggaggtgaacaccccctg 81456 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Plus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 74549 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 74608 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 74609 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 74651 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 81278 ctgaagcagctgcggcggatctcgccgacgtt 81309
>ref|XM_474449.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1059 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 264 gaagcagctgcgacggatctcacccacgttgccgccgggccggggcgcggtggcgagctc 323 |||||||||||| |||||||| || ||||| |||||||||| ||| | || ||||| Sbjct: 969 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 910 Query: 324 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 383 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 909 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 850 Query: 384 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 442 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 849 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 791
>dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118D03, full insert sequence Length = 1385 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 264 gaagcagctgcgacggatctcacccacgttgccgccgggccggggcgcggtggcgagctc 323 |||||||||||| |||||||| || ||||| |||||||||| ||| | || ||||| Sbjct: 1100 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 1041 Query: 324 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 383 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 1040 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 981 Query: 384 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 442 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 980 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 922
>tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx62 gene for class III peroxidase 62 precursor, exons 1-2 Length = 1186 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 264 gaagcagctgcgacggatctcacccacgttgccgccgggccggggcgcggtggcgagctc 323 |||||||||||| |||||||| || ||||| |||||||||| ||| | || ||||| Sbjct: 1096 gaagcagctgcggcggatctcgccgacgttcccgccgggcctgggtaccttgctgagctt 1037 Query: 324 ggccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcac 383 | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| || Sbjct: 1036 gaccatggacttggcaaactggtcgaagaaggcggccttgtcctgcgcgaactgcctgac 977 Query: 384 gatgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctggc 442 ||||| ||||||||| ||| ||| ||||||||||||||||| ||||| || ||||||| Sbjct: 976 gatggacgccgtggtctggttcttcatgagcgccatgtcggaagtgaagacaccctggc 918
>ref|XM_474450.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1008 Score = 103 bits (52), Expect = 5e-19 Identities = 102/116 (87%), Gaps = 2/116 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||||||| ||| Sbjct: 886 ccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaactgcctgacg 828 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 || ||||||||| | |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 827 attggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccccctg 772 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 950 ctgaagcagctgcggcggatctcgccgacgtt 919
>tpe|BN000592.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx63 gene for class III peroxidase 63 precursor, exons 1-2 Length = 1098 Score = 103 bits (52), Expect = 5e-19 Identities = 102/116 (87%), Gaps = 2/116 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| |||||||||||| |||||| ||| ||||| | |||| |||||||||| ||| Sbjct: 976 ccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgaactgcctgacg 918 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 || ||||||||| | |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 917 attggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccccctg 862 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 1040 ctgaagcagctgcggcggatctcgccgacgtt 1009
>dbj|AK070680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060N16, full insert sequence Length = 2256 Score = 95.6 bits (48), Expect = 1e-16 Identities = 101/116 (87%), Gaps = 2/116 (1%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcgtccttgctgcgcg-cgaactgcctcacg 384 ||||||| |||||||||||| |||||| ||| ||||| | |||| ||| |||||| ||| Sbjct: 911 ccatggacttggcgaactgcctgaagaatgcggccttg-tccgcggcgagctgcctgacg 853 Query: 385 atgggcgccgtggtgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 || ||||||||| | |||||||||||||||||||| |||||||||||||| ||||| Sbjct: 852 attggcgccgtgatccggtccttgatgagcgccatatcggaggtgaacaccccctg 797 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 262 ctgaagcagctgcgacggatctcacccacgtt 293 |||||||||||||| |||||||| || ||||| Sbjct: 975 ctgaagcagctgcggcggatctcgccgacgtt 944
>ref|XM_474448.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 889 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 830 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 829 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 787
>dbj|AK104928.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B06, full insert sequence Length = 1299 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 978 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 919 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 918 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 876
>dbj|AK065090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L22, full insert sequence Length = 1333 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 979 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 920 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 919 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 877
>tpe|BN000590.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx61 gene for class III peroxidase 61, exons 1-2 Length = 1178 Score = 69.9 bits (35), Expect = 7e-09 Identities = 86/103 (83%) Strand = Plus / Minus Query: 338 cgaactgcgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtgg 397 ||||||||| |||||||||| ||||| |||||||| |||| ||||||| ||| || Sbjct: 1044 cgaactgcgtgaagaaggcggccttgtcctgcgcgaaccgcctgacgatggccgcagttt 985 Query: 398 tgcggtccttgatgagcgccatgtcggaggtgaacacgccctg 440 | ||||| ||||||||||||||||||||||||||| ||||| Sbjct: 984 gggggtccaggatgagcgccatgtcggaggtgaacaccccctg 942
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaag 354 ||||||| ||||||||||||||||||||| Sbjct: 67551 ccatggacttggcgaactgcgcgaagaag 67523
>dbj|AK108989.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-F11, full insert sequence Length = 1351 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaag 354 ||||||| ||||||||||||||||||||| Sbjct: 1040 ccatggacttggcgaactgcgcgaagaag 1012
>tpe|BN000583.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx54 gene for class III peroxidase 54 precursor, exon 1 Length = 1038 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaag 354 ||||||| ||||||||||||||||||||| Sbjct: 958 ccatggacttggcgaactgcgcgaagaag 930
>emb|AL731590.4|OSJN00233 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035I04, complete sequence Length = 140890 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaag 354 ||||||| ||||||||||||||||||||| Sbjct: 9725 ccatggacttggcgaactgcgcgaagaag 9697
>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds Length = 760 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaa 353 |||||||||||||||||||| ||||||| Sbjct: 489 ccatggatttggcgaactgctcgaagaa 462
>emb|BX640677.1|HSM806736 Homo sapiens genomic DNA; cDNA DKFZp686K1692 (from clone DKFZp686K1692) Length = 5959 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 atttttgaaaagtctttttgct 55 |||||||||||||||||||||| Sbjct: 2313 atttttgaaaagtctttttgct 2334
>gb|AC091565.10| Homo sapiens chromosome 15, clone RP11-228M15, complete sequence Length = 180741 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 atttttgaaaagtctttttgct 55 |||||||||||||||||||||| Sbjct: 109988 atttttgaaaagtctttttgct 109967
>gb|AC025138.14| Homo sapiens chromosome 15, clone RP11-291O21, complete sequence Length = 173173 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 atttttgaaaagtctttttgct 55 |||||||||||||||||||||| Sbjct: 33795 atttttgaaaagtctttttgct 33774
>gb|AC137568.8| Homo sapiens chromosome 15, clone RP11-1217C12, complete sequence Length = 199045 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 atttttgaaaagtctttttgct 55 |||||||||||||||||||||| Sbjct: 98265 atttttgaaaagtctttttgct 98244
>gb|AC055876.16| Homo sapiens chromosome 15, clone RP11-578F21, complete sequence Length = 192533 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 atttttgaaaagtctttttgct 55 |||||||||||||||||||||| Sbjct: 16414 atttttgaaaagtctttttgct 16435
>gb|AC126332.9| Homo sapiens chromosome 15, clone RP11-665A22, complete sequence Length = 161099 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 atttttgaaaagtctttttgct 55 |||||||||||||||||||||| Sbjct: 42892 atttttgaaaagtctttttgct 42871
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 ttgatgagcgccatgtcggag 426 ||||||||||||||||||||| Sbjct: 581898 ttgatgagcgccatgtcggag 581918
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 222 ggcgtcgacgacggtgtcgatggcgcgccgggc 254 |||||||| |||| |||||||||||||| |||| Sbjct: 309971 ggcgtcgatgacgttgtcgatggcgcgctgggc 310003
>ref|XM_754706.1| Ustilago maydis 521 hypothetical protein (UM03652.1) partial mRNA Length = 1404 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tcgacgacggtgtcgatggcg 246 ||||||||||||||||||||| Sbjct: 175 tcgacgacggtgtcgatggcg 195
>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome Length = 300923 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tcaaatttttgaaaagtcttt 50 ||||||||||||||||||||| Sbjct: 136224 tcaaatttttgaaaagtcttt 136244
>gb|DQ376124.1| Eucalyptus globulus subsp. globulus peroxidase (Px1) mRNA, partial cds Length = 957 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaag 354 ||||||| |||||||||||| |||||||| Sbjct: 718 ccatggacttggcgaactgctcgaagaag 690
>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome Length = 1229853 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tcaaatttttgaaaagtcttt 50 ||||||||||||||||||||| Sbjct: 702472 tcaaatttttgaaaagtcttt 702452
>gb|AE009702.1| Brucella melitensis 16M chromosome II, section 64 of 107 of the complete sequence Length = 12043 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 ttgatgagcgccatgtcggag 426 ||||||||||||||||||||| Sbjct: 7177 ttgatgagcgccatgtcggag 7157
>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome Length = 1230230 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tcaaatttttgaaaagtcttt 50 ||||||||||||||||||||| Sbjct: 138729 tcaaatttttgaaaagtcttt 138749
>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence Length = 1226565 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tcaaatttttgaaaagtcttt 50 ||||||||||||||||||||| Sbjct: 138440 tcaaatttttgaaaagtcttt 138460
>dbj|AB178018.1| Ralstonia solanacearum hpx24 gene for hypothetical protein, complete cds Length = 6913 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cggtgtcgatggcgcgccggg 253 ||||||||||||||||||||| Sbjct: 5827 cggtgtcgatggcgcgccggg 5807
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 ttgatgagcgccatgtcggag 426 ||||||||||||||||||||| Sbjct: 635178 ttgatgagcgccatgtcggag 635158
>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence Length = 298406 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 aaatttttgaaaagtcttttt 52 ||||||||||||||||||||| Sbjct: 168333 aaatttttgaaaagtcttttt 168353
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 ttgatgagcgccatgtcggag 426 ||||||||||||||||||||| Sbjct: 635166 ttgatgagcgccatgtcggag 635146
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 atgggcgccgtggtgcggtccttg 408 ||||||||| |||||||||||||| Sbjct: 1621721 atgggcgccatggtgcggtccttg 1621698
>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds Length = 1308 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 326 ccatggatttggcgaactgcgcgaagaaggcg 357 ||||||| |||||||||||| |||||||||| Sbjct: 925 ccatggacttggcgaactgccggaagaaggcg 894
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 cctggctgttcaccagcgcc 456 |||||||||||||||||||| Sbjct: 3599629 cctggctgttcaccagcgcc 3599648
>gb|U64833.1| Caenorhabditis elegans cosmid B0507, complete sequence Length = 36709 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ttcaaatttttgaaaagtct 48 |||||||||||||||||||| Sbjct: 29114 ttcaaatttttgaaaagtct 29133
>ref|XM_501984.1| Yarrowia lipolytica CLIB122, YALI0C18645g predicted mRNA Length = 2925 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaagcagctgcgacggatct 283 |||||||||||||||||||| Sbjct: 2788 gaagcagctgcgacggatct 2769
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tgggcgccgtggtgcggtcc 405 |||||||||||||||||||| Sbjct: 892644 tgggcgccgtggtgcggtcc 892625
>emb|CR378680.1| Photobacterium profundum SS9 chromosome 2; segment 6/7 Length = 349751 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 ttcaaatttttgaaaagtcttttt 52 ||||||||||||||||| |||||| Sbjct: 148547 ttcaaatttttgaaaaggcttttt 148570
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cgggccggggcgcggtggcg 318 |||||||||||||||||||| Sbjct: 75093 cgggccggggcgcggtggcg 75112
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ggctgttcaccagcgccttg 459 |||||||||||||||||||| Sbjct: 2464047 ggctgttcaccagcgccttg 2464066
>gb|AC106897.5| Homo sapiens BAC clone RP11-279O9 from 4, complete sequence Length = 161572 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 atttttgaaaagtctttttgctta 57 ||||||||||||||||||| |||| Sbjct: 23979 atttttgaaaagtctttttactta 23956
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gggccggggcgcggtggcga 319 |||||||||||||||||||| Sbjct: 258201 gggccggggcgcggtggcga 258220
>gb|AF340167.1|AF340167 Streptomyces verticillus polyketide synthase gene, partial cds Length = 6219 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 gccggggcgcggtggcgagc 321 |||||||||||||||||||| Sbjct: 1278 gccggggcgcggtggcgagc 1259
>gb|AE004624.1| Pseudomonas aeruginosa PAO1, section 185 of 529 of the complete genome Length = 11533 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ggctgttcaccagcgccttg 459 |||||||||||||||||||| Sbjct: 4156 ggctgttcaccagcgccttg 4175
>gb|AE005086.1| Halobacterium sp. NRC-1 section 117 of 170 of the complete genome Length = 11548 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 tcgacgacggtgtcgatggcgcgc 249 |||||| ||||||||||||||||| Sbjct: 1338 tcgacggcggtgtcgatggcgcgc 1361
>emb|AJ438168.1|HSA438168 Halobacterium salinarum basB gene for amino acid binding protein Length = 1242 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 tcgacgacggtgtcgatggcgcgc 249 |||||| ||||||||||||||||| Sbjct: 191 tcgacggcggtgtcgatggcgcgc 168
>ref|NM_210013.1| Eremothecium gossypii AEL201Wp (AEL201W), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gggccggggcgcggtggcga 319 |||||||||||||||||||| Sbjct: 262 gggccggggcgcggtggcga 281
>gb|AY110228.1| Zea mays CL32412_1 mRNA sequence Length = 1199 Score = 40.1 bits (20), Expect = 6.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 345 cgcgaagaaggcgtccttgctgcgcgcgaactgcctcacgatgggcgccgtggtgc 400 |||||||||| |||| | |||| ||||||||| ||||||||||||||||||| Sbjct: 310 cgcgaagaagtcgtcttggctggccgcgaactggtcgacgatgggcgccgtggtgc 365
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 tgccgccgggccggggcgcggtgg 316 ||||||||||||| |||||||||| Sbjct: 4487536 tgccgccgggccgcggcgcggtgg 4487513
>gb|AC154128.3| Tribolium castaneum BAC T.cast_C36A24 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 154107 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atttttgaaaagtctttttg 53 |||||||||||||||||||| Sbjct: 103295 atttttgaaaagtctttttg 103314
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gaagcagctgcgacggatct 283 |||||||||||||||||||| Sbjct: 2560071 gaagcagctgcgacggatct 2560052
>gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940126D9, complete sequence Length = 125236 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ggtggcgagctcggccatgg 331 |||||||||||||||||||| Sbjct: 76869 ggtggcgagctcggccatgg 76850
>gb|U11701.1|HSU11701 Human LIM-homeobox domain protein (hLH-2) mRNA, complete cds Length = 1887 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gggccggggcgcggtggcga 319 |||||||||||||||||||| Sbjct: 377 gggccggggcgcggtggcga 396
>gb|U10250.1|ASU10250 Aeromonas sobria AER 14 cephalosporinase gene, complete cds Length = 1499 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ggtggcgagctcggccatgg 331 |||||||||||||||||||| Sbjct: 576 ggtggcgagctcggccatgg 557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,628,716 Number of Sequences: 3902068 Number of extensions: 3628716 Number of successful extensions: 69104 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 68398 Number of HSP's gapped (non-prelim): 690 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
