ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMU_STRSZ (Q8GQP7) Bifunctional protein glmU [Includes: UDP-N-a... 30 3.1
2GLMU_ANASP (Q8YQB2) Bifunctional protein glmU [Includes: UDP-N-a... 29 5.2
3DADA1_PSEAE (Q9HTQ0) D-amino acid dehydrogenase 1 small subunit ... 28 8.9

>GLMU_STRSZ (Q8GQP7) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 460

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +2

Query: 107 RLITTSYIQEGSLISDAALWTGSV*IGAGHDQSVGRSCLDGRGLDDGVQLGPHA 268
           R+ + S I  GS I D+ L  G V         V +S ++G  L DGV +GP+A
Sbjct: 285 RIGSRSVITNGSYILDSRLGEGVV---------VSQSVIEGSVLADGVTVGPYA 329



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>GLMU_ANASP (Q8YQB2) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 451

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/77 (31%), Positives = 36/77 (46%)
 Frame = +2

Query: 83  IIKHQDSIRLITTSYIQEGSLISDAALWTGSV*IGAGHDQSVGRSCLDGRGLDDGVQLGP 262
           II+ Q  +R  T   IQ GS I   +L   S     G + +V  S +    + DG ++GP
Sbjct: 269 IIEPQTHLRGSTV--IQSGSRIGPGSLIENSQ---LGANVTVHYSVVTDSTIQDGTKIGP 323

Query: 263 HALVPLHVVVGLQLAVG 313
           +A +  H  VG    +G
Sbjct: 324 YAHLRGHAQVGANCRIG 340



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>DADA1_PSEAE (Q9HTQ0) D-amino acid dehydrogenase 1 small subunit (EC 1.4.99.1)|
          Length = 432

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 89  KHQDSIRLITTSYIQEGSLISDAALWTG 172
           + ++++ +ITT    EG  IS A  WTG
Sbjct: 327 RRRETLEMITTDLYPEGGDISQATFWTG 354


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,483,538
Number of Sequences: 219361
Number of extensions: 1034771
Number of successful extensions: 5009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5007
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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