ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472575.1| Oryza sativa (japonica cultivar-group), predic... 194 2e-46
2emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4,... 194 2e-46
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
4dbj|AK107452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
5dbj|AK068521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
6gb|DQ138743.1| Drosophila yakuba strain Tai18 CG14842 gene, part... 50 0.007
7emb|BX547934.18| Zebrafish DNA sequence from clone DKEY-161J23 i... 42 1.6
8ref|XM_719362.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.6
9gb|DQ138744.1| Drosophila yakuba strain T33 CG14842 gene, partia... 42 1.6
10ref|XM_414826.1| PREDICTED: Gallus gallus similar to expressed s... 40 6.3
11ref|XM_715727.1| Candida albicans SC5314 hypothetical protein (C... 40 6.3
12gb|AC165425.2| Mus musculus BAC clone RP23-252G18 from chromosom... 40 6.3
13gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosom... 40 6.3
14ref|XM_883747.1| Candida albicans SC5314 hypothetical protein (C... 40 6.3
15ref|XM_716240.1| Candida albicans SC5314 hypothetical protein (C... 40 6.3
16gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome... 40 6.3
17gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.3
18gb|DQ406744.1| Volvox carteri f. nagariensis Met1 (met1) gene, c... 40 6.3
19gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, compl... 40 6.3
20gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, compl... 40 6.3
21gb|AY823228.1| Candida tropicalis NADPH-cytochrome P450 oxidored... 40 6.3
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
23gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.3
24dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
25gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complet... 40 6.3
26dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 6.3 
>ref|XM_472575.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1593

 Score =  194 bits (98), Expect = 2e-46
 Identities = 227/270 (84%)
 Strand = Plus / Minus

                                                                        
Query: 201  gatcgtcgatgttcctgacgggtcccttgaaccacttcctggcgtcgacgacccaccaga 260
            ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||
Sbjct: 1540 gatcgtcgatgttcctgacgggtcccttgaaccacctcctggcgtcgagcacccaccaga 1481

                                                                        
Query: 261  gcatgatgagccccagtacgacgccgagcgcgatgggcgcgtagttgaaggtgtccatcc 320
            ||  |||||| || ||   | |||||||||||| ||| |||||||||||| || |    |
Sbjct: 1480 gcccgatgaggccgaggcaggcgccgagcgcgacgggggcgtagttgaagttgccggcgc 1421

                                                                        
Query: 321  tgatggggtacatggtggggagcaggaagacggagcaggtgtagcagatccacaggaacg 380
            |||| ||||||   || ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct: 1420 tgatcgggtacgccgtcgggaggaggaacacggtgcaggtgtagcagatccacaggaacg 1361

                                                                        
Query: 381  ccacgaggcagacgggcctgctggcccaccggaggtagaaggggccggggcggaagtcct 440
            | |||||||| || ||||     || | ||||||||||||||| || ||   ||||||||
Sbjct: 1360 cgacgaggcacaccggccgcgacgcgcgccggaggtagaagggccccggcgagaagtcct 1301

                                          
Query: 441  cctcccgcatcaccatgcgcgcgaagatgg 470
            ||||||||||||||||||| ||||||||||
Sbjct: 1300 cctcccgcatcaccatgcgggcgaagatgg 1271
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>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13,
             complete sequence
          Length = 127952

 Score =  194 bits (98), Expect = 2e-46
 Identities = 227/270 (84%)
 Strand = Plus / Minus

                                                                         
Query: 201   gatcgtcgatgttcctgacgggtcccttgaaccacttcctggcgtcgacgacccaccaga 260
             ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||
Sbjct: 85203 gatcgtcgatgttcctgacgggtcccttgaaccacctcctggcgtcgagcacccaccaga 85144

                                                                         
Query: 261   gcatgatgagccccagtacgacgccgagcgcgatgggcgcgtagttgaaggtgtccatcc 320
             ||  |||||| || ||   | |||||||||||| ||| |||||||||||| || |    |
Sbjct: 85143 gcccgatgaggccgaggcaggcgccgagcgcgacgggggcgtagttgaagttgccggcgc 85084

                                                                         
Query: 321   tgatggggtacatggtggggagcaggaagacggagcaggtgtagcagatccacaggaacg 380
             |||| ||||||   || ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct: 85083 tgatcgggtacgccgtcgggaggaggaacacggtgcaggtgtagcagatccacaggaacg 85024

                                                                         
Query: 381   ccacgaggcagacgggcctgctggcccaccggaggtagaaggggccggggcggaagtcct 440
             | |||||||| || ||||     || | ||||||||||||||| || ||   ||||||||
Sbjct: 85023 cgacgaggcacaccggccgcgacgcgcgccggaggtagaagggccccggcgagaagtcct 84964

                                           
Query: 441   cctcccgcatcaccatgcgcgcgaagatgg 470
             ||||||||||||||||||| ||||||||||
Sbjct: 84963 cctcccgcatcaccatgcgggcgaagatgg 84934
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  194 bits (98), Expect = 2e-46
 Identities = 227/270 (84%)
 Strand = Plus / Minus

                                                                            
Query: 201      gatcgtcgatgttcctgacgggtcccttgaaccacttcctggcgtcgacgacccaccaga 260
                ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||
Sbjct: 21650661 gatcgtcgatgttcctgacgggtcccttgaaccacctcctggcgtcgagcacccaccaga 21650602

                                                                            
Query: 261      gcatgatgagccccagtacgacgccgagcgcgatgggcgcgtagttgaaggtgtccatcc 320
                ||  |||||| || ||   | |||||||||||| ||| |||||||||||| || |    |
Sbjct: 21650601 gcccgatgaggccgaggcaggcgccgagcgcgacgggggcgtagttgaagttgccggcgc 21650542

                                                                            
Query: 321      tgatggggtacatggtggggagcaggaagacggagcaggtgtagcagatccacaggaacg 380
                |||| ||||||   || ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct: 21650541 tgatcgggtacgccgtcgggaggaggaacacggtgcaggtgtagcagatccacaggaacg 21650482

                                                                            
Query: 381      ccacgaggcagacgggcctgctggcccaccggaggtagaaggggccggggcggaagtcct 440
                | |||||||| || ||||     || | ||||||||||||||| || ||   ||||||||
Sbjct: 21650481 cgacgaggcacaccggccgcgacgcgcgccggaggtagaagggccccggcgagaagtcct 21650422

                                              
Query: 441      cctcccgcatcaccatgcgcgcgaagatgg 470
                ||||||||||||||||||| ||||||||||
Sbjct: 21650421 cctcccgcatcaccatgcgggcgaagatgg 21650392
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>dbj|AK107452.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C06, full
            insert sequence
          Length = 1640

 Score =  194 bits (98), Expect = 2e-46
 Identities = 227/270 (84%)
 Strand = Plus / Plus

                                                                        
Query: 201  gatcgtcgatgttcctgacgggtcccttgaaccacttcctggcgtcgacgacccaccaga 260
            ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||
Sbjct: 832  gatcgtcgatgttcctgacgggtcccttgaaccacctcctggcgtcgagcacccaccaga 891

                                                                        
Query: 261  gcatgatgagccccagtacgacgccgagcgcgatgggcgcgtagttgaaggtgtccatcc 320
            ||  |||||| || ||   | |||||||||||| ||| |||||||||||| || |    |
Sbjct: 892  gcccgatgaggccgaggcaggcgccgagcgcgacgggggcgtagttgaagttgccggcgc 951

                                                                        
Query: 321  tgatggggtacatggtggggagcaggaagacggagcaggtgtagcagatccacaggaacg 380
            |||| ||||||   || ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct: 952  tgatcgggtacgccgtcgggaggaggaacacggtgcaggtgtagcagatccacaggaacg 1011

                                                                        
Query: 381  ccacgaggcagacgggcctgctggcccaccggaggtagaaggggccggggcggaagtcct 440
            | |||||||| || ||||     || | ||||||||||||||| || ||   ||||||||
Sbjct: 1012 cgacgaggcacaccggccgcgacgcgcgccggaggtagaagggccccggcgagaagtcct 1071

                                          
Query: 441  cctcccgcatcaccatgcgcgcgaagatgg 470
            ||||||||||||||||||| ||||||||||
Sbjct: 1072 cctcccgcatcaccatgcgggcgaagatgg 1101
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>dbj|AK068521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155C12, full
            insert sequence
          Length = 2009

 Score =  194 bits (98), Expect = 2e-46
 Identities = 227/270 (84%)
 Strand = Plus / Minus

                                                                        
Query: 201  gatcgtcgatgttcctgacgggtcccttgaaccacttcctggcgtcgacgacccaccaga 260
            ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||
Sbjct: 1738 gatcgtcgatgttcctgacgggtcccttgaaccacctcctggcgtcgagcacccaccaga 1679

                                                                        
Query: 261  gcatgatgagccccagtacgacgccgagcgcgatgggcgcgtagttgaaggtgtccatcc 320
            ||  |||||| || ||   | |||||||||||| ||| |||||||||||| || |    |
Sbjct: 1678 gcccgatgaggccgaggcaggcgccgagcgcgacgggggcgtagttgaagttgccggcgc 1619

                                                                        
Query: 321  tgatggggtacatggtggggagcaggaagacggagcaggtgtagcagatccacaggaacg 380
            |||| ||||||   || ||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct: 1618 tgatcgggtacgccgtcgggaggaggaacacggtgcaggtgtagcagatccacaggaacg 1559

                                                                        
Query: 381  ccacgaggcagacgggcctgctggcccaccggaggtagaaggggccggggcggaagtcct 440
            | |||||||| || ||||     || | ||||||||||||||| || ||   ||||||||
Sbjct: 1558 cgacgaggcacaccggccgcgacgcgcgccggaggtagaagggccccggcgagaagtcct 1499

                                          
Query: 441  cctcccgcatcaccatgcgcgcgaagatgg 470
            ||||||||||||||||||| ||||||||||
Sbjct: 1498 cctcccgcatcaccatgcgggcgaagatgg 1469
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>gb|DQ138743.1| Drosophila yakuba strain Tai18 CG14842 gene, partial cds
          Length = 528

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 168 cattggcattgtcattgccattgccgttttgca 200
           ||||||||||| |||||||||||||||| ||||
Sbjct: 238 cattggcattgccattgccattgccgttgtgca 206
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>emb|BX547934.18| Zebrafish DNA sequence from clone DKEY-161J23 in linkage group 24,
            complete sequence
          Length = 174457

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 83   ctaaacttacatcacacacac 103
            |||||||||||||||||||||
Sbjct: 7368 ctaaacttacatcacacacac 7348
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>ref|XM_719362.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04198)
            partial mRNA
          Length = 4239

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 168  cattggcattgtcattgccattgcc 192
            ||||| |||||||||||||||||||
Sbjct: 2914 cattgtcattgtcattgccattgcc 2890
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>gb|DQ138744.1| Drosophila yakuba strain T33 CG14842 gene, partial cds
          Length = 534

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 168 cattggcattgtcattgccattgccgttttgca 200
           ||||| ||||| |||||||||||||||| ||||
Sbjct: 238 cattgccattgccattgccattgccgttgtgca 206
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>ref|XM_414826.1| PREDICTED: Gallus gallus similar to expressed sequence AI159731;
            sodium/glucose cotransporter 1-like (LOC416522), mRNA
          Length = 5549

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  acatggtggggagcaggaag 349
            ||||||||||||||||||||
Sbjct: 1711 acatggtggggagcaggaag 1730
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>ref|XM_715727.1| Candida albicans SC5314 hypothetical protein (CaO19_13846), mRNA
          Length = 384

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 168 cattggcattgtcattgccattgccgtt 195
           ||||| ||||| ||||||||||||||||
Sbjct: 103 cattgccattgccattgccattgccgtt 76
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>gb|AC165425.2| Mus musculus BAC clone RP23-252G18 from chromosome 9, complete sequence
          Length = 217329

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   accagagcatgatgagcccc 274
             ||||||||||||||||||||
Sbjct: 66379 accagagcatgatgagcccc 66398
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>gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosome 14, complete sequence
          Length = 195425

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     acatcacacacacgcacaac 110
              ||||||||||||||||||||
Sbjct: 133512 acatcacacacacgcacaac 133493
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>ref|XM_883747.1| Candida albicans SC5314 hypothetical protein (CaJ7.0257) partial
           mRNA
          Length = 393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 168 cattggcattgtcattgccattgccgtt 195
           ||||| ||||| ||||||||||||||||
Sbjct: 103 cattgccattgccattgccattgccgtt 76
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>ref|XM_716240.1| Candida albicans SC5314 hypothetical protein (CaO19.6493) partial
           mRNA
          Length = 393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 168 cattggcattgtcattgccattgccgtt 195
           ||||| ||||| ||||||||||||||||
Sbjct: 103 cattgccattgccattgccattgccgtt 76
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>gb|AC160965.4| Mus musculus BAC clone RP24-334E4 from chromosome 1, complete sequence
          Length = 182270

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     cacacacacgcacaacccaacgaa 118
              ||||||||||||||||| ||||||
Sbjct: 176915 cacacacacgcacaaccaaacgaa 176892
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 274     cagtacgacgccgagcgcga 293
               ||||||||||||||||||||
Sbjct: 3295535 cagtacgacgccgagcgcga 3295554
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>gb|DQ406744.1| Volvox carteri f. nagariensis Met1 (met1) gene, complete cds
          Length = 29854

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 173   gcattgtcattgccattgccgttttgca 200
             |||||||||||| ||||||| |||||||
Sbjct: 21634 gcattgtcattgtcattgccattttgca 21607
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>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence
          Length = 154259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   tggcattgtcattgccattg 190
             ||||||||||||||||||||
Sbjct: 31091 tggcattgtcattgccattg 31072
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>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence
          Length = 186308

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    tggcattgtcattgccattg 190
              ||||||||||||||||||||
Sbjct: 128013 tggcattgtcattgccattg 128032
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>gb|AY823228.1| Candida tropicalis NADPH-cytochrome P450 oxidoreductase (CPR-b) gene,
            complete cds
          Length = 3245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  cattggcattgtcattgccattgccgtt 195
            ||||||||||| ||||||| ||||||||
Sbjct: 2988 cattggcattggcattgccgttgccgtt 3015



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  cattggcattgtcattgccattgccgtt 195
            ||||||||||| ||||| ||||||||||
Sbjct: 2982 cattggcattggcattggcattgccgtt 3009
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 168      cattggcattgtcattgccattgc 191
                ||||| ||||||||||||||||||
Sbjct: 25345996 cattgccattgtcattgccattgc 25345973
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 285     cgagcgcgatgggcgcgtag 304
               ||||||||||||||||||||
Sbjct: 2933276 cgagcgcgatgggcgcgtag 2933257
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>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0016N23
          Length = 147336

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    cattggcattgtcattgccattgc 191
              ||||| ||||||||||||||||||
Sbjct: 121181 cattgccattgtcattgccattgc 121158
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>gb|AC144761.4| Mus musculus BAC clone RP24-303C2 from 1, complete sequence
          Length = 176981

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 95    cacacacacgcacaacccaacgaa 118
             ||||||||||||||||| ||||||
Sbjct: 69108 cacacacacgcacaaccaaacgaa 69085
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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 168    cattggcattgtcattgccattgccgtt 195
              ||||| ||||| ||||||||||||||||
Sbjct: 483342 cattgccattgccattgccattgccgtt 483315


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,596,985
Number of Sequences: 3902068
Number of extensions: 3596985
Number of successful extensions: 123200
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122901
Number of HSP's gapped (non-prelim): 292
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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