ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart12g09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478753.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1359 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 ||||||||||||| |||||||| ||||| || ||||||||||||||| | |||||||||| Sbjct: 1014 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 955 Query: 460 cgcagag 466 ||||||| Sbjct: 954 cgcagag 948
>ref|XM_506417.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1019_E02.4 mRNA Length = 1451 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 ||||||||||||| |||||||| ||||| || ||||||||||||||| | |||||||||| Sbjct: 1016 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 957 Query: 460 cgcagag 466 ||||||| Sbjct: 956 cgcagag 950
>gb|AF466357.1| Oryza sativa (japonica cultivar-group) floral organ regulator 1 (FOR1) mRNA, complete cds Length = 1392 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 ||||||||||||| |||||||| ||||| || ||||||||||||||| | |||||||||| Sbjct: 1003 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 944 Query: 460 cgcagag 466 ||||||| Sbjct: 943 cgcagag 937
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 ||||||||||||| |||||||| ||||| || ||||||||||||||| | |||||||||| Sbjct: 22821113 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 22821172 Query: 460 cgcagag 466 ||||||| Sbjct: 22821173 cgcagag 22821179
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 ||||||||||||| |||||||| ||||| || ||||||||||||||| | |||||||||| Sbjct: 14380 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 14439 Query: 460 cgcagag 466 ||||||| Sbjct: 14440 cgcagag 14446
>dbj|AK101897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070P18, full insert sequence Length = 1450 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 ||||||||||||| |||||||| ||||| || ||||||||||||||| | |||||||||| Sbjct: 1015 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 956 Query: 460 cgcagag 466 ||||||| Sbjct: 955 cgcagag 949
>dbj|AK061685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-A10, full insert sequence Length = 1359 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 ||||||||||||| |||||||| ||||| || ||||||||||||||| | |||||||||| Sbjct: 1014 ggttgtgctcgtacggcttgcagccgtggcggatgacgccgtgcagcctcgggagcgggc 955 Query: 460 cgcagag 466 ||||||| Sbjct: 954 cgcagag 948
>gb|AY109014.1| Zea mays PCO154451 mRNA sequence Length = 674 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 |||||||| |||| |||||||| |||||| ||||||||||| |||||||||||||| Sbjct: 666 ggttgtgcgcgtacggcttgcacccgtgcttgatgacgccgtggcccttggggagcgggc 607 Query: 460 cgca 463 |||| Sbjct: 606 cgca 603
>gb|AY104164.1| Zea mays PCO154452 mRNA sequence Length = 1412 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 400 ggttgtgctcgtagggcttgcatccgtgccgcatgacgccgtgcagcttggggagcgggc 459 |||||||| |||| |||||||| |||||| |||||||||||| |||||||||||| | Sbjct: 981 ggttgtgcgcgtacggcttgcacccgtgcttgatgacgccgtgccccttggggagcggcc 922 Query: 460 cgca 463 |||| Sbjct: 921 cgca 918
>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence Length = 200891 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 |||||||||||||||||||||||| Sbjct: 4180 acacgggcacacacacactctctc 4203
>gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, complete sequence Length = 187453 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 |||||||||||||||||||||||| Sbjct: 172012 acacgggcacacacacactctctc 172035
>emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in linkage group 1, complete sequence Length = 165355 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 73 cacacactctctcggggaagcgc 95 ||||||||||||||||||||||| Sbjct: 135251 cacacactctctcggggaagcgc 135229
>emb|AL935050.11| Zebrafish DNA sequence from clone CH211-59B1, complete sequence Length = 177773 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 69 cacacacacactctctcggggaagcgc 95 |||||||||||||||||||| |||||| Sbjct: 93545 cacacacacactctctcgggtaagcgc 93519
>emb|BX248110.8| Zebrafish DNA sequence from clone DKEY-122I21 in linkage group 20, complete sequence Length = 78928 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 69 cacacacacactctctcggggaagcgc 95 |||||||||||||||||||| |||||| Sbjct: 19819 cacacacacactctctcgggcaagcgc 19793
>emb|BX001030.7| Zebrafish DNA sequence from clone CH211-234P6 in linkage group 24, complete sequence Length = 156560 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 63 cacgggcacacacacactctctc 85 ||||||||||||||||||||||| Sbjct: 137927 cacgggcacacacacactctctc 137905
>emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 in linkage group 6, complete sequence Length = 162560 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 70 acacacacactctctcggggaagcgc 95 ||||||||||||||||||| |||||| Sbjct: 5232 acacacacactctctcgggcaagcgc 5207
>ref|XM_822709.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.389.0290) partial mRNA Length = 1032 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 ggcgaggtcgctcagagctgg 362 ||||||||||||||||||||| Sbjct: 817 ggcgaggtcgctcagagctgg 837
>emb|BX511308.11| Zebrafish DNA sequence from clone DKEYP-118E10 in linkage group 15, complete sequence Length = 123109 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 cacacacactctctcggggaagcgc 95 |||||||||||||||||| |||||| Sbjct: 101330 cacacacactctctcgggcaagcgc 101306
>emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 in linkage group 14, complete sequence Length = 184463 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 cacacacactctctcggggaagcgc 95 |||||||||||||||||| |||||| Sbjct: 118625 cacacacactctctcgggcaagcgc 118649
>emb|BX324143.9| Zebrafish DNA sequence from clone CH211-197D1 in linkage group 3, complete sequence Length = 105743 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 cacacacactctctcggggaagcgc 95 |||||||||||||||||| |||||| Sbjct: 89949 cacacacactctctcgggcaagcgc 89973
>emb|BX927400.10| Zebrafish DNA sequence from clone CH211-195K18 in linkage group 19, complete sequence Length = 172655 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 cacacacactctctcggggaagcgc 95 |||||||||||||||||| |||||| Sbjct: 50151 cacacacactctctcgggcaagcgc 50127
>emb|AL935128.13| Zebrafish DNA sequence from clone CH211-183D5 in linkage group 7, complete sequence Length = 152770 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 cacacacactctctcggggaagcgc 95 |||||||||||||||||| |||||| Sbjct: 8857 cacacacactctctcgggcaagcgc 8881
>gb|AC136640.2| Mus musculus BAC clone RP23-2E24 from 12, complete sequence Length = 199358 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 tacacaaagctagcagctctc 170 ||||||||||||||||||||| Sbjct: 151579 tacacaaagctagcagctctc 151599
>emb|AL928973.3| Mouse DNA sequence from clone RP23-259J7 on chromosome 2, complete sequence Length = 157458 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 acacgggcacacacacactct 82 ||||||||||||||||||||| Sbjct: 75357 acacgggcacacacacactct 75377
>ref|XM_369647.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05817.4) partial mRNA Length = 1578 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 acacaaagctagcagctctc 170 |||||||||||||||||||| Sbjct: 285 acacaaagctagcagctctc 266
>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15, complete sequence Length = 168519 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 tgacgccgtgcagcttggggagcg 456 |||||||||||||||||| ||||| Sbjct: 93254 tgacgccgtgcagcttggcgagcg 93277
>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete sequence Length = 242558 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 gcacacacacactctctcggggaagcgc 95 |||||||||||| |||||||| |||||| Sbjct: 216489 gcacacacacacactctcgggcaagcgc 216516
>emb|AL035408.5|HS55I10 Human DNA sequence from clone CTA-55I10 on chromosome 1q32.2-41 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 90429 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 agctagcagctctcaaggac 176 |||||||||||||||||||| Sbjct: 5436 agctagcagctctcaaggac 5417
>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the Vamp2 gene for vesicle-associated membrane 2, the Per1 gene for period homolog 1 (Drosophila), the Hes7 gene for hairy and enhancer of split 7 (Drosophila), the Aloxe3 gene for arachidonate lipoxygenase 3, the Alox12b gene for arachidonate 12-lipoxygenase 12R type, the Alox15b gene for arachidonate 15-lipoxygenase second type, the Gucy2e gene for guanylate cyclase 2e, a novel gene, the gene for LYST-interacting protein LIP8 (Lip8-pending), the gene for the likely ortholog of H. sapiens trafficking protein particle complex 1 (TRAPPC1)), the Kcnab3 gene for potassium voltage-gated channel shaker-related subfamily beta member 3, a novel gene, the 3' end of the Chd3 gene for chromodomain helicase DNA binding protein 3 and six CpG islands, complete sequence Length = 261224 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 acacgggcacacacacactctctc 85 |||||| ||||||||||||||||| Sbjct: 40360 acacggacacacacacactctctc 40337
>emb|AL808019.6| Zebrafish DNA sequence from clone CH211-258D20 in linkage group 7 Contains a gene for a novel actinin and four CpG islands, complete sequence Length = 159698 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 acacgggcacacacacactctctc 85 ||||| |||||||||||||||||| Sbjct: 10172 acacgcgcacacacacactctctc 10149
>emb|CR735103.4| Zebrafish DNA sequence from clone CH211-13L14 in linkage group 12, complete sequence Length = 126042 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 68 gcacacacacactctctcggggaagcgc 95 |||||||||||| |||||||| |||||| Sbjct: 73154 gcacacacacacactctcgggcaagcgc 73127
>gb|AC105009.13| Homo sapiens chromosome 8, clone RP11-188K5, complete sequence Length = 175936 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 acacgggcacacacacactc 81 |||||||||||||||||||| Sbjct: 71719 acacgggcacacacacactc 71738
>tpg|BK005057.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 54 (WRKY54) gene, complete cds Length = 1106 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 tgacgccgtgcagcttggggagcg 456 |||||||||||||||||| ||||| Sbjct: 202 tgacgccgtgcagcttggcgagcg 179
>gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, complete sequence Length = 220031 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 aacactgacagacaccactc 313 |||||||||||||||||||| Sbjct: 145525 aacactgacagacaccactc 145544
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 ||||| |||||||||||||||||| Sbjct: 870843 acacgcgcacacacacactctctc 870866
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 tgacgccgtgcagcttggggagcg 456 |||||||||||||||||| ||||| Sbjct: 23407718 tgacgccgtgcagcttggcgagcg 23407741
>gb|DQ054598.1| Homo sapiens eosinophil peroxidase (EPX) gene, complete cds Length = 15329 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 ||||| |||||||||||||||||| Sbjct: 4626 acacgtgcacacacacactctctc 4649
>gb|AC005866.4| Homo sapiens 12 BAC RP11-407G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119388 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 ||||| |||||||||||||||||| Sbjct: 11040 acacgcgcacacacacactctctc 11063
>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete sequence Length = 231197 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cacgggcacacacacactct 82 |||||||||||||||||||| Sbjct: 202287 cacgggcacacacacactct 202306
>gb|AC005962.1|AC005962 Homo sapiens chromosome 17, clone hRPK.506_H_21, complete sequence Length = 162083 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 ||||| |||||||||||||||||| Sbjct: 117298 acacgtgcacacacacactctctc 117321
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ggcggcgaggtcgctcagag 358 |||||||||||||||||||| Sbjct: 223156 ggcggcgaggtcgctcagag 223137
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 ||||| |||||||||||||||||| Sbjct: 870843 acacgcgcacacacacactctctc 870866
>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134217 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 acacgggcacacacacactctctc 85 ||||| |||||||||||||||||| Sbjct: 8428 acacgcgcacacacacactctctc 8451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,463,762 Number of Sequences: 3902068 Number of extensions: 12463762 Number of successful extensions: 89290 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89072 Number of HSP's gapped (non-prelim): 216 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
