Clone Name | rbart12g05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK069870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039C20, full insert sequence Length = 1079 Score = 220 bits (111), Expect = 3e-54 Identities = 204/235 (86%) Strand = Plus / Minus Query: 250 atgaaagggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagat 309 |||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| Sbjct: 819 atgatagggctttctggacctcaacagtcacttcctttggtggtttttcggcatgcagat 760 Query: 310 ttaccaccaacccattcttggagtagtagtcaatcacaggttcagtttgcatatggaaag 369 || | || | || ||||||| |||||||||||||||||| | |||||| | ||||| | Sbjct: 759 ttgcgactatgcccttcttggtgtagtagtcaatcacaggcttagtttgtacgtggaagg 700 Query: 370 cctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaagggctctc 429 | |||||||||||||| || || |||||||||||||||||||||||||| ||||| |||| Sbjct: 699 cttcaagccttgacttcaatactgcagctgtgtcatctttcctttgaattaagggttctc 640 Query: 430 cggtaacatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaaga 484 | ||||||||||||| |||||||||||| ||||||||||| || ||||| ||||| Sbjct: 639 cagtaacatcatcaagtccaggagtcttaggaggagcaaattttgtatgataaga 585
>dbj|AK059754.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B09, full insert sequence Length = 1069 Score = 220 bits (111), Expect = 3e-54 Identities = 204/235 (86%) Strand = Plus / Minus Query: 250 atgaaagggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagat 309 |||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| Sbjct: 820 atgatagggctttctggacctcaacagtcacttcctttggtggtttttcggcatgcagat 761 Query: 310 ttaccaccaacccattcttggagtagtagtcaatcacaggttcagtttgcatatggaaag 369 || | || | || ||||||| |||||||||||||||||| | |||||| | ||||| | Sbjct: 760 ttgcgactatgcccttcttggtgtagtagtcaatcacaggcttagtttgtacgtggaagg 701 Query: 370 cctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaagggctctc 429 | |||||||||||||| || || |||||||||||||||||||||||||| ||||| |||| Sbjct: 700 cttcaagccttgacttcaatactgcagctgtgtcatctttcctttgaattaagggttctc 641 Query: 430 cggtaacatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaaga 484 | ||||||||||||| |||||||||||| ||||||||||| || ||||| ||||| Sbjct: 640 cagtaacatcatcaagtccaggagtcttaggaggagcaaattttgtatgataaga 586
>dbj|D10334.1|RICADKA Oryza sativa mRNA for adenylate kinase-a, complete cds Length = 1154 Score = 220 bits (111), Expect = 3e-54 Identities = 204/235 (86%) Strand = Plus / Minus Query: 250 atgaaagggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagat 309 |||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| Sbjct: 860 atgatagggctttctggacctcaacagtcacttcctttggtggtttttcggcatgcagat 801 Query: 310 ttaccaccaacccattcttggagtagtagtcaatcacaggttcagtttgcatatggaaag 369 || | || | || ||||||| |||||||||||||||||| | |||||| | ||||| | Sbjct: 800 ttgcgactatgcccttcttggtgtagtagtcaatcacaggcttagtttgtacgtggaagg 741 Query: 370 cctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaagggctctc 429 | |||||||||||||| || || |||||||||||||||||||||||||| ||||| |||| Sbjct: 740 cttcaagccttgacttcaatactgcagctgtgtcatctttcctttgaattaagggttctc 681 Query: 430 cggtaacatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaaga 484 | ||||||||||||| |||||||||||| ||||||||||| || ||||| ||||| Sbjct: 680 cagtaacatcatcaagtccaggagtcttaggaggagcaaattttgtatgataaga 626
>gb|AY109686.1| Zea mays CL35924_2 mRNA sequence Length = 1088 Score = 206 bits (104), Expect = 5e-50 Identities = 203/236 (86%) Strand = Plus / Plus Query: 248 tcatgaaagggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaag 307 |||||| ||||||||| |||||||| | ||||||||||||||||||||||||||| | || Sbjct: 223 tcatgagagggctttcagcacctcagcagtcacttcctttggtggtttctccgcaggcag 282 Query: 308 atttaccaccaacccattcttggagtagtagtcaatcacaggttcagtttgcatatggaa 367 |||||||||||| || ||||| ||||| || ||||||||||| |||||||| | ||||| Sbjct: 283 atttaccaccaagcccttcttagagtaataatcaatcacaggctcagtttgtttgtggaa 342 Query: 368 agcctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaagggctc 427 || |||||||||||||| || ||| | || |||||||| ||||||||||||| ||||| Sbjct: 343 ggcttcaagccttgacttcaaaacctcggcagtgtcatccctcctttgaatcaatggctc 402 Query: 428 tccggtaacatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaag 483 ||| || |||||||||||||| |||| ||| ||||| ||||| || |||||||||| Sbjct: 403 tccagttacatcatcaactcctggagactttggaggtgcaaattttgtatggtaag 458
>gb|BT017007.1| Zea mays clone EK07D2310D06.c mRNA sequence Length = 985 Score = 196 bits (99), Expect = 5e-47 Identities = 186/215 (86%) Strand = Plus / Minus Query: 255 agggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagatttacc 314 |||||||||||||||||| | ||||||||||| ||||||||||| ||| | || || ||| Sbjct: 749 agggctttctgcacctcagcagtcacttccttcggtggtttctctgcaggcaggttcacc 690 Query: 315 accaacccattcttggagtagtagtcaatcacaggttcagtttgcatatggaaagcctca 374 || || || ||||||||||| || |||||||||||||| ||||| | |||||||| ||| Sbjct: 689 actaagcccttcttggagtaataatcaatcacaggttcggtttgtctgtggaaagcttca 630 Query: 375 agccttgactttaagaccgcagctgtgtcatctttcctttgaatcaagggctctccggta 434 ||||||||||| |||||| |||| ||||||||| ||||||||||||| |||||||| || Sbjct: 629 agccttgacttcaagacctcagcggtgtcatctctcctttgaatcaatggctctccagtt 570 Query: 435 acatcatcaactccaggagtcttcggaggagcaaa 469 |||||||||||||| |||| ||| ||||| ||||| Sbjct: 569 acatcatcaactcctggagactttggaggtgcaaa 535
>gb|AY106372.1| Zea mays PCO111761 mRNA sequence Length = 1173 Score = 196 bits (99), Expect = 5e-47 Identities = 186/215 (86%) Strand = Plus / Minus Query: 255 agggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagatttacc 314 |||||||||||||||||| | ||||||||||| ||||||||||| ||| | || || ||| Sbjct: 868 agggctttctgcacctcagcagtcacttccttcggtggtttctctgcaggcaggttcacc 809 Query: 315 accaacccattcttggagtagtagtcaatcacaggttcagtttgcatatggaaagcctca 374 || || || ||||||||||| || |||||||||||||| ||||| | |||||||| ||| Sbjct: 808 actaagcccttcttggagtaataatcaatcacaggttcggtttgtctgtggaaagcttca 749 Query: 375 agccttgactttaagaccgcagctgtgtcatctttcctttgaatcaagggctctccggta 434 ||||||||||| |||||| |||| ||||||||| ||||||||||||| |||||||| || Sbjct: 748 agccttgacttcaagacctcagcggtgtcatctctcctttgaatcaatggctctccagtt 689 Query: 435 acatcatcaactccaggagtcttcggaggagcaaa 469 |||||||||||||| |||| ||| ||||| ||||| Sbjct: 688 acatcatcaactcctggagactttggaggtgcaaa 654
>dbj|AK073605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048N16, full insert sequence Length = 1059 Score = 139 bits (70), Expect = 1e-29 Identities = 163/194 (84%) Strand = Plus / Minus Query: 279 acttcctttggtggtttctccgcatgaagatttaccaccaacccattcttggagtagtag 338 ||||| || ||||| ||||| ||||||||||| ||||||| | ||||||||||||||| Sbjct: 761 acttctttcggtggcttctcggcatgaagattggccaccaaggccttcttggagtagtag 702 Query: 339 tcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagaccgcagct 398 |||||||| ||||||||||| | ||||| || ||||| || ||||| || ||| ||||| Sbjct: 701 tcaatcactggttcagtttgtttgtggaaggcttcaagtctagacttcaaaacctcagct 642 Query: 399 gtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccaggagtcttc 458 ||||| |||||||||||||| | || ||||| || |||||||||||||||||| ||| Sbjct: 641 gtgtcgtctttcctttgaattagtggttctccagtgacatcatcaactccaggaaccttt 582 Query: 459 ggaggagcaaactt 472 ||||| |||||||| Sbjct: 581 ggaggtgcaaactt 568
>dbj|D10335.1|RICADKB Oryza sativa mRNA for adenylate kinase-b, complete cds Length = 1085 Score = 139 bits (70), Expect = 1e-29 Identities = 163/194 (84%) Strand = Plus / Minus Query: 279 acttcctttggtggtttctccgcatgaagatttaccaccaacccattcttggagtagtag 338 ||||| || ||||| ||||| ||||||||||| ||||||| | ||||||||||||||| Sbjct: 793 acttctttcggtggcttctcggcatgaagattggccaccaaggccttcttggagtagtag 734 Query: 339 tcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagaccgcagct 398 |||||||| ||||||||||| | ||||| || ||||| || ||||| || ||| ||||| Sbjct: 733 tcaatcactggttcagtttgtttgtggaaggcttcaagtctagacttcaaaacctcagct 674 Query: 399 gtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccaggagtcttc 458 ||||| |||||||||||||| | || ||||| || |||||||||||||||||| ||| Sbjct: 673 gtgtcgtctttcctttgaattagtggttctccagtgacatcatcaactccaggaaccttt 614 Query: 459 ggaggagcaaactt 472 ||||| |||||||| Sbjct: 613 ggaggtgcaaactt 600
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 250 atgaaagggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagat 309 |||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| Sbjct: 7479037 atgatagggctttctggacctcaacagtcacttcctttggtggtttttcggcatgcagat 7478978 Query: 310 ttaccaccaacccattcttggagtagtagtcaatcac 346 || | || | || ||||||| ||||||||||||||| Sbjct: 7478977 ttgcgactatgcccttcttggtgtagtagtcaatcac 7478941 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 363 tggaaagcctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaag 422 ||||| || |||||||||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 7478325 tggaaggcttcaagccttgacttcaatactgcagctgtgtcatctttcctttgaattaag 7478266 Query: 423 ggctctccggtaac 436 || ||||| ||||| Sbjct: 7478265 ggttctccagtaac 7478252 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaaga 484 |||||||||| |||||||||||| ||||||||||| || ||||| ||||| Sbjct: 7477614 acatcatcaagtccaggagtcttaggaggagcaaattttgtatgataaga 7477565
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 250 atgaaagggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagat 309 |||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| Sbjct: 7478916 atgatagggctttctggacctcaacagtcacttcctttggtggtttttcggcatgcagat 7478857 Query: 310 ttaccaccaacccattcttggagtagtagtcaatcac 346 || | || | || ||||||| ||||||||||||||| Sbjct: 7478856 ttgcgactatgcccttcttggtgtagtagtcaatcac 7478820 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 363 tggaaagcctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaag 422 ||||| || |||||||||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 7478204 tggaaggcttcaagccttgacttcaatactgcagctgtgtcatctttcctttgaattaag 7478145 Query: 423 ggctctccggtaac 436 || ||||| ||||| Sbjct: 7478144 ggttctccagtaac 7478131 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaaga 484 |||||||||| |||||||||||| ||||||||||| || ||||| ||||| Sbjct: 7477493 acatcatcaagtccaggagtcttaggaggagcaaattttgtatgataaga 7477444
>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 98782 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 250 atgaaagggctttctgcacctcaacggtcacttcctttggtggtttctccgcatgaagat 309 |||| ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||| Sbjct: 68713 atgatagggctttctggacctcaacagtcacttcctttggtggtttttcggcatgcagat 68654 Query: 310 ttaccaccaacccattcttggagtagtagtcaatcac 346 || | || | || ||||||| ||||||||||||||| Sbjct: 68653 ttgcgactatgcccttcttggtgtagtagtcaatcac 68617 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 363 tggaaagcctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaag 422 ||||| || |||||||||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 68001 tggaaggcttcaagccttgacttcaatactgcagctgtgtcatctttcctttgaattaag 67942 Query: 423 ggctctccggtaac 436 || ||||| ||||| Sbjct: 67941 ggttctccagtaac 67928 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaaga 484 |||||||||| |||||||||||| ||||||||||| || ||||| ||||| Sbjct: 67290 acatcatcaagtccaggagtcttaggaggagcaaattttgtatgataaga 67241
>dbj|AB041773.1| Oryza sativa Adk-a gene for adenylate kinase, partial cds Length = 4341 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 363 tggaaagcctcaagccttgactttaagaccgcagctgtgtcatctttcctttgaatcaag 422 ||||| || |||||||||||||| || || |||||||||||||||||||||||||| ||| Sbjct: 4199 tggaaggcttcaagccttgacttcaatactgcagctgtgtcatctttcctttgaattaag 4140 Query: 423 ggctctccggtaac 436 || ||||| ||||| Sbjct: 4139 ggttctccagtaac 4126 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaaga 484 |||||||||| |||||||||||| ||||||||||| || ||||| ||||| Sbjct: 3483 acatcatcaagtccaggagtcttaggaggagcaaattttgtatgataaga 3434
>ref|NM_125735.2| Arabidopsis thaliana ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleotide kinase/ phosphotransferase, phosphate group as acceptor AT5G63400 (ADK1) transcript variant AT5G63400.1 mRNA, complete cds Length = 1061 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 332 gtagtagtcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagac 391 |||||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| || Sbjct: 704 gtagtaatcaatcaccggttgagtttgactgtggaaagctgcaagcctcgactttagaac 645 Query: 392 cgcagctgtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 |||| | |||||||| | ||| |||| |||||||| |||| ||||||||||||||| Sbjct: 644 atcagcgttatcatctttacgttggatcagaggctctccagtaatatcatcaactccagg 585 Query: 452 agtcttcggaggagcaaacttcgtatggtaa 482 || || ||||||||||| || || |||||| Sbjct: 584 ggttttgggaggagcaaatttggtgtggtaa 554
>gb|AY735745.1| Arabidopsis thaliana hypothetical protein AT5G63390 mRNA, complete cds Length = 2830 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 332 gtagtagtcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagac 391 |||||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| || Sbjct: 675 gtagtaatcaatcaccggttgagtttgactgtggaaagctgcaagcctcgactttagaac 616 Query: 392 cgcagctgtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 |||| | |||||||| | ||| |||| |||||||| |||| ||||||||||||||| Sbjct: 615 atcagcgttatcatctttacgttggatcagaggctctccagtaatatcatcaactccagg 556 Query: 452 agtcttcggaggagcaaacttcgtatggtaa 482 || || ||||||||||| || || |||||| Sbjct: 555 ggttttgggaggagcaaatttggtgtggtaa 525
>gb|AY079340.1| Arabidopsis thaliana putative adenylate kinase (At5g63400) mRNA, complete cds Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 332 gtagtagtcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagac 391 |||||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| || Sbjct: 657 gtagtaatcaatcaccggttgagtttgactgtggaaagctgcaagcctcgactttagaac 598 Query: 392 cgcagctgtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 |||| | |||||||| | ||| |||| |||||||| |||| ||||||||||||||| Sbjct: 597 atcagcgttatcatctttacgttggatcagaggctctccagtaatatcatcaactccagg 538 Query: 452 agtcttcggaggagcaaacttcgtatggtaa 482 || || ||||||||||| || || |||||| Sbjct: 537 ggttttgggaggagcaaatttggtgtggtaa 507
>gb|AY039945.1| Arabidopsis thaliana putative adenylate kinase (At5g63400) mRNA, complete cds Length = 979 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 332 gtagtagtcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagac 391 |||||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| || Sbjct: 671 gtagtaatcaatcaccggttgagtttgactgtggaaagctgcaagcctcgactttagaac 612 Query: 392 cgcagctgtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 |||| | |||||||| | ||| |||| |||||||| |||| ||||||||||||||| Sbjct: 611 atcagcgttatcatctttacgttggatcagaggctctccagtaatatcatcaactccagg 552 Query: 452 agtcttcggaggagcaaacttcgtatggtaa 482 || || ||||||||||| || || |||||| Sbjct: 551 ggttttgggaggagcaaatttggtgtggtaa 521
>emb|BX833277.1|CNS0A0FH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZC06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 963 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 332 gtagtagtcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagac 391 |||||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| || Sbjct: 660 gtagtaatcaatcaccggttgagtttgactgtggaaagctgcaagcctcgactttagaac 601 Query: 392 cgcagctgtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 |||| | |||||||| | ||| |||| |||||||| |||| ||||||||||||||| Sbjct: 600 atcagcgttatcatctttacgttggatcagaggctctccagtaatatcatcaactccagg 541 Query: 452 agtcttcggaggagcaaacttcgtatggtaa 482 || || ||||||||||| || || |||||| Sbjct: 540 ggttttgggaggagcaaatttggtgtggtaa 510
>gb|AY085188.1| Arabidopsis thaliana clone 13667 mRNA, complete sequence Length = 904 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 332 gtagtagtcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagac 391 |||||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| || Sbjct: 704 gtagtaatcaatcaccggttgagtttgactgtggaaagctgcaagcctcgactttagaac 645 Query: 392 cgcagctgtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 |||| | |||||||| | ||| |||| |||||||| |||| ||||||||||||||| Sbjct: 644 atcagcgttatcatctttacgttggatcagaggctctccagtaatatcatcaactccagg 585 Query: 452 agtcttcggaggagcaaacttcgtatggtaa 482 || || ||||||||||| || || |||||| Sbjct: 584 ggttttgggaggagcaaatttggtgtggtaa 554
>emb|AJ718932.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC12-1-330, cultivar Bright Yellow 2 Length = 262 Score = 69.9 bits (35), Expect = 7e-09 Identities = 132/165 (80%) Strand = Plus / Minus Query: 287 tggtggtttctccgcatgaagatttaccaccaacccattcttggagtagtagtcaatcac 346 |||||||||||| ||| ||||||| || || || ||||||| |||||||||||| || Sbjct: 199 tggtggtttctcggcaggaagattcactacattacccttcttggcgtagtagtcaatgac 140 Query: 347 aggttcagtttgcatatggaaagcctcaagccttgactttaagaccgcagctgtgtcatc 406 || ||||||||| | |||||| | || ||||||||| | | || ||||| || ||||| Sbjct: 139 cggctcagtttgcctgtggaaaccttccagccttgacntnagaacagcagcagtatcatc 80 Query: 407 tttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 ||| | ||| ||||| |||||||| || |||||||| || ||||| Sbjct: 79 tttacgttgtatcaaaggctctccagtgacatcatctaccccagg 35
>gb|AF082882.1|AF082882 Arabidopsis thaliana adenylate kinase (ADK1) mRNA, complete cds Length = 969 Score = 69.9 bits (35), Expect = 7e-09 Identities = 122/151 (80%) Strand = Plus / Minus Query: 332 gtagtagtcaatcacaggttcagtttgcatatggaaagcctcaagccttgactttaagac 391 |||||| |||||||| |||| |||||| | |||||||| ||||||| ||||||| || Sbjct: 688 gtagtaatcaatcaccggttgagtttgactgtggaaagctgcaagcctcgactttagaac 629 Query: 392 cgcagctgtgtcatctttcctttgaatcaagggctctccggtaacatcatcaactccagg 451 |||| | |||||||| | ||| |||| |||||||| |||| ||||||||||||||| Sbjct: 628 atcagcgttatcatctttacgttggatcagaggctctccagtaatatcatcaactccagg 569 Query: 452 agtcttcggaggagcaaacttcgtatggtaa 482 || || ||||||||||| || || |||||| Sbjct: 568 ggttttgggaggagcaaatttagtgtggtaa 538
>gb|AC137922.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0046A04, complete sequence Length = 141001 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 279 acttcctttggtggtttctccgcatgaagatttaccaccaacccattcttggagtagtag 338 ||||| || ||||| ||||| ||||||||||| ||||||| | ||||||||||||||| Sbjct: 140714 acttctttcggtggcttctcggcatgaagattggccaccaaggccttcttggagtagtag 140655 Query: 339 tcaatcac 346 |||||||| Sbjct: 140654 tcaatcac 140647 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 348 ggttcagtttgcatatggaaagcctcaagccttgactttaagaccgcagctgtgtcatct 407 ||||||||||| | ||||| || ||||| || ||||| || ||| |||||||||| ||| Sbjct: 140349 ggttcagtttgtttgtggaaggcttcaagtctagacttcaaaacctcagctgtgtcgtct 140290 Query: 408 ttcctttgaat 418 ||||||||||| Sbjct: 140289 ttcctttgaat 140279 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaactt 472 |||||||||||||||||| ||| ||||| |||||||| Sbjct: 139627 acatcatcaactccaggaacctttggaggtgcaaactt 139590
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 279 acttcctttggtggtttctccgcatgaagatttaccaccaacccattcttggagtagtag 338 ||||| || ||||| ||||| ||||||||||| ||||||| | ||||||||||||||| Sbjct: 11938987 acttctttcggtggcttctcggcatgaagattggccaccaaggccttcttggagtagtag 11938928 Query: 339 tcaatcac 346 |||||||| Sbjct: 11938927 tcaatcac 11938920 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 348 ggttcagtttgcatatggaaagcctcaagccttgactttaagaccgcagctgtgtcatct 407 ||||||||||| | ||||| || ||||| || ||||| || ||| |||||||||| ||| Sbjct: 11938622 ggttcagtttgtttgtggaaggcttcaagtctagacttcaaaacctcagctgtgtcgtct 11938563 Query: 408 ttcctttgaat 418 ||||||||||| Sbjct: 11938562 ttcctttgaat 11938552 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaactt 472 |||||||||||||||||| ||| ||||| |||||||| Sbjct: 11937900 acatcatcaactccaggaacctttggaggtgcaaactt 11937863
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 279 acttcctttggtggtttctccgcatgaagatttaccaccaacccattcttggagtagtag 338 ||||| || ||||| ||||| ||||||||||| ||||||| | ||||||||||||||| Sbjct: 12017394 acttctttcggtggcttctcggcatgaagattggccaccaaggccttcttggagtagtag 12017335 Query: 339 tcaatcac 346 |||||||| Sbjct: 12017334 tcaatcac 12017327 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 348 ggttcagtttgcatatggaaagcctcaagccttgactttaagaccgcagctgtgtcatct 407 ||||||||||| | ||||| || ||||| || ||||| || ||| |||||||||| ||| Sbjct: 12017029 ggttcagtttgtttgtggaaggcttcaagtctagacttcaaaacctcagctgtgtcgtct 12016970 Query: 408 ttcctttgaat 418 ||||||||||| Sbjct: 12016969 ttcctttgaat 12016959 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaactt 472 |||||||||||||||||| ||| ||||| |||||||| Sbjct: 12016307 acatcatcaactccaggaacctttggaggtgcaaactt 12016270
>gb|BT012920.1| Lycopersicon esculentum clone 114083F, mRNA sequence Length = 977 Score = 56.0 bits (28), Expect = 1e-04 Identities = 124/156 (79%) Strand = Plus / Minus Query: 287 tggtggtttctccgcatgaagatttaccaccaacccattcttggagtagtagtcaatcac 346 |||||||||||| ||| ||||||| || || || ||||||| ||||||||||| || Sbjct: 754 tggtggtttctcagcaggaagattcactacattacccttcttggcatagtagtcaatgac 695 Query: 347 aggttcagtttgcatatggaaagcctcaagccttgactttaagaccgcagctgtgtcatc 406 || ||||||||| | ||||| || || ||||||||||| | || | ||| || ||||| Sbjct: 694 cggctcagtttgcctgtggaaggcttctagccttgacttgagaacagaagcagtatcatc 635 Query: 407 tttcctttgaatcaagggctctccggtaacatcatc 442 ||| | ||| ||||| |||||||| || |||||||| Sbjct: 634 ttttcgttgtatcaatggctctccagtgacatcatc 599
>emb|AJ276864.1|STU276864 Solanum tuberosum partial adk gene for putative adenylate kinase and ure gene for urease (allelic form 2) Length = 18962 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 279 acttcctttggtggtttctccgcatgaag 307 |||||||||||||||||||| |||||||| Sbjct: 2536 acttcctttggtggtttctcagcatgaag 2508
>dbj|AB007649.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLE2 Length = 58527 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Plus Query: 435 acatcatcaactccaggagtcttcggaggagcaaacttcgtatggtaa 482 ||||||||||||||||| || || ||||||||||| || || |||||| Sbjct: 5297 acatcatcaactccaggggttttgggaggagcaaatttggtgtggtaa 5344
>gb|AC135505.15| Medicago truncatula clone mth2-24j8, complete sequence Length = 124563 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 435 acatcatcaactccaggagtcttcggaggagcaaacttcgtatggta 481 ||||||||||| |||| | ||| |||||||||||||| |||||||| Sbjct: 64403 acatcatcaaccccagaaaccttgggaggagcaaactttgtatggta 64357
>ref|NM_001037052.1| Arabidopsis thaliana ADK1 (ADENYLATE KINASE 1); ATP binding / adenylate kinase/ nucleotide kinase AT5G63400 (ADK1) transcript variant AT5G63400.2 mRNA, complete cds Length = 1030 Score = 44.1 bits (22), Expect = 0.42 Identities = 40/46 (86%) Strand = Plus / Minus Query: 437 atcatcaactccaggagtcttcggaggagcaaacttcgtatggtaa 482 ||||||||||||||| || || ||||||||||| || || |||||| Sbjct: 599 atcatcaactccaggggttttgggaggagcaaatttggtgtggtaa 554
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 atataaaaaaggatgtccatat 43 |||||||||||||||||||||| Sbjct: 2134817 atataaaaaaggatgtccatat 2134838
>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence Length = 186062 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 atgtccatatgtataaaataa 54 ||||||||||||||||||||| Sbjct: 172407 atgtccatatgtataaaataa 172427
>gb|AC101891.8| Mus musculus chromosome 3, clone RP23-468J10, complete sequence Length = 174044 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 atgtccatatgtataaaataa 54 ||||||||||||||||||||| Sbjct: 151526 atgtccatatgtataaaataa 151506
>emb|AL807397.6| Mouse DNA sequence from clone RP23-176N13 on chromosome 4, complete sequence Length = 193939 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 aaaaaaggatgtccatatgta 46 ||||||||||||||||||||| Sbjct: 96095 aaaaaaggatgtccatatgta 96115
>ref|XM_368256.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00988.4) partial mRNA Length = 2013 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 catggcaggcagaaaatgtg 150 |||||||||||||||||||| Sbjct: 635 catggcaggcagaaaatgtg 616
>ref|XM_419917.1| PREDICTED: Gallus gallus similar to CUB and Sushi multiple domains 1 (LOC421899), mRNA Length = 10614 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 335 gtagtcaatcacaggttcagtttg 358 ||||||| |||||||||||||||| Sbjct: 6612 gtagtcattcacaggttcagtttg 6589
>gb|AF542587.1| Akebia quinata maturase K (matK) gene, partial cds; chloroplast Length = 970 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ataatgctcatgtatataaa 28 |||||||||||||||||||| Sbjct: 93 ataatgctcatgtatataaa 112
>emb|AL592427.6| Human DNA sequence from clone RP11-57F5 on chromosome X, complete sequence Length = 140691 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 taaaataatgctcatttgta 66 |||||||||||||||||||| Sbjct: 89333 taaaataatgctcatttgta 89314
>emb|AL355518.20| Human DNA sequence from clone RP11-39C2 on chromosome 6 Contains the gene for a novel protein, complete sequence Length = 129947 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 atgtataaaataatgctcat 61 |||||||||||||||||||| Sbjct: 122280 atgtataaaataatgctcat 122261
>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190580 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 agaataatgctcatgtatat 25 |||||||||||||||||||| Sbjct: 9826 agaataatgctcatgtatat 9807
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13 Contains STS and GSSs, complete sequence Length = 137739 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 atctttcctttgaatcaagg 423 |||||||||||||||||||| Sbjct: 53190 atctttcctttgaatcaagg 53171
>gb|AC131183.4| Mus musculus BAC clone RP23-225A14 from chromosome 12, complete sequence Length = 141293 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cacaggttcagtttgcatat 363 |||||||||||||||||||| Sbjct: 82628 cacaggttcagtttgcatat 82609
>gb|AC073657.5|AC073657 Homo sapiens chromosome 15 clone RP11-107F6 map 15q14, complete sequence Length = 164272 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atgtccatatgtataaaata 53 |||||||||||||||||||| Sbjct: 74737 atgtccatatgtataaaata 74756 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atgtccatatgtataaaata 53 |||||||||||||||||||| Sbjct: 73015 atgtccatatgtataaaata 73034
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ctccgcatgaagatttaccaccaa 319 ||||| |||||||||||||||||| Sbjct: 2498083 ctccggatgaagatttaccaccaa 2498106
>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0064G16 Length = 166453 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 ctccgcatgaagatttaccaccaa 319 ||||| |||||||||||||||||| Sbjct: 114004 ctccggatgaagatttaccaccaa 114027
>emb|AL844141.7| Zebrafish DNA sequence from clone DKEY-30K6, complete sequence Length = 257634 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gcaaaacctgtaacaaaatg 117 |||||||||||||||||||| Sbjct: 102800 gcaaaacctgtaacaaaatg 102781
>gb|AC147245.3| Mus musculus BAC clone RP23-462E12 from 12, complete sequence Length = 179735 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cacaggttcagtttgcatat 363 |||||||||||||||||||| Sbjct: 10927 cacaggttcagtttgcatat 10946
>dbj|AB069851.1| Akebia quinata chloroplast matK gene for maturase K, partial cds Length = 1215 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ataatgctcatgtatataaa 28 |||||||||||||||||||| Sbjct: 557 ataatgctcatgtatataaa 576
>gb|U07203.1|TVU07203 Trichomonas vaginalis hydrogenosomal adenylate kinase proprotein gene, complete cds Length = 959 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ttcttggagtagtagtcaat 343 |||||||||||||||||||| Sbjct: 760 ttcttggagtagtagtcaat 741
>dbj|AP007299.1| Lotus japonicus genomic DNA, clone:LjT30I08, TM0492, complete sequence Length = 106844 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 atataaaaaaggatgtccatatgt 45 |||||||||||| ||||||||||| Sbjct: 24022 atataaaaaagggtgtccatatgt 24045
>emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, complete sequence Length = 173481 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gcaaaacctgtaacaaaatg 117 |||||||||||||||||||| Sbjct: 62000 gcaaaacctgtaacaaaatg 62019
>emb|AL671991.5| Mouse DNA sequence from clone RP23-343L7 on chromosome X, complete sequence Length = 211866 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tatgtataaaataatgctca 60 |||||||||||||||||||| Sbjct: 179424 tatgtataaaataatgctca 179405 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,710,820 Number of Sequences: 3902068 Number of extensions: 4710820 Number of successful extensions: 89384 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89123 Number of HSP's gapped (non-prelim): 253 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)