ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart12g01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192999.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 939 Score = 174 bits (88), Expect = 2e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 267 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 326 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 929 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 870 Query: 327 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 386 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 869 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 813 Query: 387 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 446 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 812 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 753 Query: 447 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 504 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 752 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 695
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 2e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 267 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 326 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 22486945 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 22486886 Query: 327 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 386 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 22486885 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 22486829 Query: 387 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 446 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 22486828 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 22486769 Query: 447 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 504 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 22486768 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 22486711
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 174 bits (88), Expect = 2e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 267 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 326 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 2682 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 2623 Query: 327 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 386 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 2622 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 2566 Query: 387 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 446 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 2565 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 2506 Query: 447 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 504 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 2505 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 2448
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672C09 Length = 145655 Score = 174 bits (88), Expect = 2e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 267 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 326 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 111083 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 111024 Query: 327 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 386 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 111023 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 110967 Query: 387 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 446 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 110966 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 110907 Query: 447 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 504 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 110906 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 110849
>dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H01, full insert sequence Length = 1183 Score = 174 bits (88), Expect = 2e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 267 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 326 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 1051 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 992 Query: 327 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 386 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 991 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 935 Query: 387 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 446 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 934 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 875 Query: 447 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 504 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 874 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 817
>gb|DQ428549.1| Sorghum propinquum locus PRC1149 genomic sequence Length = 632 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 338 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 279 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 278 tagtactcgaggtagtccccgaacctgtagggtccggggtac 237 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428548.1| Sorghum bicolor voucher PI585454 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428547.1| Sorghum bicolor voucher PI267539 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428546.1| Sorghum bicolor voucher PI267408 locus PRC1149 genomic sequence Length = 634 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428545.1| Sorghum bicolor voucher PI221607 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428544.1| Sorghum bicolor voucher PI152702 locus PRC1149 genomic sequence Length = 640 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428543.1| Sorghum bicolor voucher NSL92371 locus PRC1149 genomic sequence Length = 642 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 332 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 273 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 272 tagtactcgaggtagtccccgaacctgtagggtccggggtac 231 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428542.1| Sorghum bicolor voucher NSL87902 locus PRC1149 genomic sequence Length = 642 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 332 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 273 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 272 tagtactcgaggtagtccccgaacctgtagggtccggggtac 231 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428541.1| Sorghum bicolor voucher NSL77217 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428540.1| Sorghum bicolor voucher NSL77034 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428539.1| Sorghum bicolor voucher NSL56174 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428538.1| Sorghum bicolor voucher NSL56003 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428537.1| Sorghum bicolor voucher NSL55243 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428536.1| Sorghum bicolor voucher NSL51365 locus PRC1149 genomic sequence Length = 640 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428535.1| Sorghum bicolor voucher NSL51030 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428534.1| Sorghum bicolor voucher NSL50875 locus PRC1149 genomic sequence Length = 639 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|DQ428533.1| Sorghum bicolor voucher BTx623 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 261 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 320 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 321 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 362 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 380 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 439 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 440 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 499 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 500 ctc 502 ||| Sbjct: 75 ctc 73
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 52.0 bits (26), Expect = 0.002 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 2 attgaattaatggttttatagaaaaaactttttaaatttcaaacat 47 |||||||||| |||||| |||| ||| ||||||||||||||||||| Sbjct: 123499 attgaattaacggttttgtagataaa-ctttttaaatttcaaacat 123455
>gb|AC024772.1| Caenorhabditis elegans cosmid Y40C5A, complete sequence Length = 45870 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 161 gattttccgaaaaaagaaacaaatc 185 ||||||| ||||||||||||||||| Sbjct: 21876 gattttctgaaaaaagaaacaaatc 21852
>gb|AC006494.13| Drosophila melanogaster clone BACR48C17, complete sequence Length = 164501 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 aactttttaaatttcaaacat 47 ||||||||||||||||||||| Sbjct: 153778 aactttttaaatttcaaacat 153758
>gb|AC091276.7| Mus musculus chromosome 15, clone RP23-167B4, complete sequence Length = 255663 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tgaattaatggttttatagaa 24 ||||||||||||||||||||| Sbjct: 120528 tgaattaatggttttatagaa 120548
>dbj|AK138508.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330045C04 product:unclassifiable, full insert sequence Length = 4472 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tgaattaatggttttatagaa 24 ||||||||||||||||||||| Sbjct: 3517 tgaattaatggttttatagaa 3537
>gb|AC008197.3|AC008197 Drosophila melanogaster, chromosome 3R, region 94B-94C, BAC clone BACR02L12, complete sequence Length = 178931 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 aactttttaaatttcaaacat 47 ||||||||||||||||||||| Sbjct: 23095 aactttttaaatttcaaacat 23075
>emb|AL928960.25| Mouse DNA sequence from clone RP23-413K16 on chromosome 2, complete sequence Length = 195733 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tgaattaatggttttatagaa 24 ||||||||||||||||||||| Sbjct: 193716 tgaattaatggttttatagaa 193736
>gb|AE003739.3| Drosophila melanogaster chromosome 3R, section 77 of 118 of the complete sequence Length = 224856 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 aactttttaaatttcaaacat 47 ||||||||||||||||||||| Sbjct: 156605 aactttttaaatttcaaacat 156585
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 atagaaaaaactttttaaatt 39 ||||||||||||||||||||| Sbjct: 211313 atagaaaaaactttttaaatt 211293
>ref|NM_187384.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3825 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 acacctgcctcgccgtgggc 380 |||||||||||||||||||| Sbjct: 3766 acacctgcctcgccgtgggc 3747
>gb|AC111024.13| Mus musculus chromosome 17, clone RP23-103P1, complete sequence Length = 219128 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 agattttccgaaaaaagaaa 179 |||||||||||||||||||| Sbjct: 215087 agattttccgaaaaaagaaa 215068
>gb|AE014852.2| Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence Length = 260929 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 agaaaaaactttttaaattt 40 |||||||||||||||||||| Sbjct: 6279 agaaaaaactttttaaattt 6298
>gb|AC024800.1| Caenorhabditis elegans cosmid Y49F6A, complete sequence Length = 24330 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaaactttttaaatttcaaa 44 |||||||||||||||||||| Sbjct: 12000 aaaactttttaaatttcaaa 12019
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 ccggcgccacgacggcttccgccc 405 |||||||||||||||||| ||||| Sbjct: 2185950 ccggcgccacgacggcttacgccc 2185973
>emb|CR376747.28| Zebrafish DNA sequence from clone CH211-248D20 in linkage group 8, complete sequence Length = 153394 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 aactttttaaatttcaaaca 46 |||||||||||||||||||| Sbjct: 114816 aactttttaaatttcaaaca 114797
>emb|AL032654.1|CEY52B11A Caenorhabditis elegans YAC Y52B11A, complete sequence Length = 106949 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaaactttttaaatttcaaa 44 |||||||||||||||||||| Sbjct: 20029 aaaactttttaaatttcaaa 20048
>gb|L36249.1|MUSIGKPERA Mus musculus strain PERA/Ei immunoglobulin kappa chain (Igk-V) gene, partial cds Length = 843 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aaaaactttttaaatttcaa 43 |||||||||||||||||||| Sbjct: 417 aaaaactttttaaatttcaa 436
>emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 4 Length = 205065 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 18 tatagaaaaaactttttaaatttcaaac 45 ||||||||||||| |||||| ||||||| Sbjct: 127911 tatagaaaaaactatttaaagttcaaac 127884
>emb|Z38059.1|SC4357 S.cerevisiae chromosome IX lambda clones 4357-3717 Length = 75317 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttttatagaaaaaacttttt 34 |||||||||||||||||||| Sbjct: 33670 ttttatagaaaaaacttttt 33689
>emb|X90711.1|BPLPSBLOC Bordetella pertussis lipopolysaccharide biosynthesis locus baf gene, waaA, waaB & wlbA,B,C,D,E,F,G,H,I,J & L genes Length = 15389 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 cgccgtgggcgccggcgccacgacggcttccg 402 ||||| |||||||||||||||| ||| ||||| Sbjct: 5317 cgccgagggcgccggcgccacgccggtttccg 5348
>gb|AF414551.1| Zingiber coloratum ribosomal protein S16 (rps16) gene, intron; chloroplast Length = 709 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttttatagaaaaaacttttt 34 |||||||||||||||||||| Sbjct: 273 ttttatagaaaaaacttttt 254
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 cgccgtgggcgccggcgcca 390 |||||||||||||||||||| Sbjct: 178967 cgccgtgggcgccggcgcca 178986
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 371 cgccgtgggcgccggcgccacgacggcttccg 402 ||||| |||||||||||||||| ||| ||||| Sbjct: 164731 cgccgagggcgccggcgccacgccggtttccg 164700
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 371 cgccgtgggcgccggcgccacgacggcttccg 402 ||||| |||||||||||||||| ||| ||||| Sbjct: 168179 cgccgagggcgccggcgccacgccggtttccg 168148
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 371 cgccgtgggcgccggcgccacgacggcttccg 402 ||||| |||||||||||||||| ||| ||||| Sbjct: 89243 cgccgagggcgccggcgccacgccggtttccg 89212
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tgcctcgccgtgggcgccggcgcc 389 ||||||||||||| |||||||||| Sbjct: 34247 tgcctcgccgtggtcgccggcgcc 34270
>emb|AL161542.2|ATCHRIV42 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 42 Length = 195068 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 18 tatagaaaaaactttttaaatttcaaac 45 ||||||||||||| |||||| ||||||| Sbjct: 84965 tatagaaaaaactatttaaagttcaaac 84938
>emb|AJ007747.1|BBR007747 Bordetella bronchiseptica cosmid BbLPS1 Length = 41642 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 371 cgccgtgggcgccggcgccacgacggcttccg 402 ||||| |||||||||||||||| ||| ||||| Sbjct: 36248 cgccgagggcgccggcgccacgccggtttccg 36217
>emb|BX511245.6| Zebrafish DNA sequence from clone CH211-125O16 in linkage group 17, complete sequence Length = 96687 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 aaaaaactttttaaatttca 42 |||||||||||||||||||| Sbjct: 75514 aaaaaactttttaaatttca 75533
>gb|DQ271042.1| Mustela vison clone II3A14 microsatellite sequence Length = 823 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 atagaaaaaactttttaaat 38 |||||||||||||||||||| Sbjct: 639 atagaaaaaactttttaaat 620
>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175481 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ttttccgaaaaaagaaacaa 182 |||||||||||||||||||| Sbjct: 94172 ttttccgaaaaaagaaacaa 94153
>gb|U42839.2| Caenorhabditis elegans cosmid F11C7, complete sequence Length = 39556 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 attttccgaaaaaagaaaca 181 |||||||||||||||||||| Sbjct: 1740 attttccgaaaaaagaaaca 1721
>gb|AF332532.1|AF332532 Eimeria peromysci 23S ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product Length = 1172 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 ccggggtacacctgcctcgc 373 |||||||||||||||||||| Sbjct: 1036 ccggggtacacctgcctcgc 1017
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tccgcgacggcggcaacgcg 463 |||||||||||||||||||| Sbjct: 3766396 tccgcgacggcggcaacgcg 3766377
>emb|BX537278.6| Zebrafish DNA sequence from clone DKEYP-88B11 in linkage group 25, complete sequence Length = 78276 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 aaaaactttttaaatttcaa 43 |||||||||||||||||||| Sbjct: 50629 aaaaactttttaaatttcaa 50610
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tgcctcgccgtgggcgccggcgcc 389 ||||||||||||| |||||||||| Sbjct: 32515513 tgcctcgccgtggtcgccggcgcc 32515536
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 acacctgcctcgccgtgggc 380 |||||||||||||||||||| Sbjct: 18634872 acacctgcctcgccgtgggc 18634891
>gb|AC154798.2| Mus musculus BAC clone RP24-495N16 from chromosome 17, complete sequence Length = 138195 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 agattttccgaaaaaagaaa 179 |||||||||||||||||||| Sbjct: 124950 agattttccgaaaaaagaaa 124969
>gb|AC074098.4| Homo sapiens BAC clone RP11-474J9 from 2, complete sequence Length = 25065 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 atagaaaaaactttttaaat 38 |||||||||||||||||||| Sbjct: 20632 atagaaaaaactttttaaat 20613
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ggcgcccttccgcgacggcg 455 |||||||||||||||||||| Sbjct: 3266002 ggcgcccttccgcgacggcg 3266021
>gb|AF102419.2|AF102419 Fagraea berteroana tRNA-Leu (trnL) gene, intron, chloroplast gene for chloroplast product Length = 860 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aaaaaactttttaaatttca 42 |||||||||||||||||||| Sbjct: 702 aaaaaactttttaaatttca 683
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1197_D06 Length = 103844 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 acacctgcctcgccgtgggc 380 |||||||||||||||||||| Sbjct: 59926 acacctgcctcgccgtgggc 59945
>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0005E02 Length = 89380 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 acacctgcctcgccgtgggc 380 |||||||||||||||||||| Sbjct: 87414 acacctgcctcgccgtgggc 87433
>emb|BX322571.5| Zebrafish DNA sequence from clone DKEY-260A4 in linkage group 17, complete sequence Length = 58025 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 aaaaaactttttaaatttca 42 |||||||||||||||||||| Sbjct: 29217 aaaaaactttttaaatttca 29198
>dbj|AB094510.1| Oryzias latipes PTPa and cGnRH-II genes for protein tyrosine phosphatase a, chicken-II-type gonadotropin-releasing hormone, complete cds Length = 32188 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ttttatagaaaaaactttttaaat 38 |||| ||||||||||||||||||| Sbjct: 5946 ttttttagaaaaaactttttaaat 5969
>dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M09, full insert sequence Length = 1258 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tgcctcgccgtgggcgccggcgcc 389 ||||||||||||| |||||||||| Sbjct: 520 tgcctcgccgtggtcgccggcgcc 543
>gb|AF145724.1|AF145724 Streptomyces albus integrase homolog, putative regulatory protein (sitI), oxidoreductase homolog (sitS), and AraC-like transcriptional regulator homolog (sitR) genes, complete cds; and unknown gene Length = 6439 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 caacgcggtgcagcacgctc 476 |||||||||||||||||||| Sbjct: 3640 caacgcggtgcagcacgctc 3659
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete sequence Length = 94903 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 367 gcctcgccgtgggcgccggcgcca 390 |||||||||| ||||||||||||| Sbjct: 26304 gcctcgccgtcggcgccggcgcca 26327
>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete sequence Length = 302131 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ttttccgaaaaaagaaacaa 182 |||||||||||||||||||| Sbjct: 80914 ttttccgaaaaaagaaacaa 80895
>gb|DQ332026.1| Synthetic construct Saccharomyces cerevisiae clone FLH148249.01X SLN1 gene, complete sequence Length = 3663 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttttatagaaaaaacttttt 34 |||||||||||||||||||| Sbjct: 813 ttttatagaaaaaacttttt 794
>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230), DS03404 (D231), DS06962 (D232), and DS07291 (D240)), complete sequence Length = 268369 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ttttccgaaaaaagaaacaa 182 |||||||||||||||||||| Sbjct: 131494 ttttccgaaaaaagaaacaa 131513
>gb|U01835.1|SCSLNI Saccharomyces cerevisiae YPH1 Sln1p (SLN1) gene, complete cds and ubiquitin (UBI1) gene, partial cds Length = 4411 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 ttttatagaaaaaacttttt 34 |||||||||||||||||||| Sbjct: 1241 ttttatagaaaaaacttttt 1222
>dbj|AB231866.1| Branchiostoma floridae gene for zinc finger protein AmphiZic, complete cds Length = 155361 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gcacactgcacacccagtca 241 |||||||||||||||||||| Sbjct: 104793 gcacactgcacacccagtca 104812
>gb|M24937.1|MUSIGKCAM2 Mus musculus (SK/CamRK) germline IgK gene, V-region Length = 843 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aaaaactttttaaatttcaa 43 |||||||||||||||||||| Sbjct: 417 aaaaactttttaaatttcaa 436 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,534,666 Number of Sequences: 3902068 Number of extensions: 4534666 Number of successful extensions: 124761 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124205 Number of HSP's gapped (non-prelim): 556 length of query: 507 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 485 effective length of database: 17,147,199,772 effective search space: 8316391889420 effective search space used: 8316391889420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
