>ref|NM_188251.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1485

 Score =  220 bits (111), Expect = 2e-54
 Identities = 177/199 (88%)
 Strand = Plus / Minus

                                                                        
Query: 155  tcagctccatgaacggccacctccatgccctctgtatctatcacgataacccaaagaagg 214
            |||||||||||| ||||||||||||| |||||| ||||||||||| |  ||  |||||||
Sbjct: 1485 tcagctccatgaccggccacctccataccctctatatctatcacggtggcctgaagaagg 1426

                                                                        
Query: 215  aggtggtgcaccacggcccatattagctaattcagggctgaccttttgtccagcttcaac 274
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 1425 gggtggtgcaccacgacccatattagctaattcagggctgaccttttgtccagcttcttc 1366

                                                                        
Query: 275  taaaatgctaataagatccttggcaaatctggcgttagcagccgtgaaaaaggtgtaagc 334
            ||  ||| | || |||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 1365 tagtatgttgatcagatccttggcaaatctggcattagcagcagtgaaaaacgtgtaagc 1306

                               
Query: 335  tgtccctgttgctccagct 353
            ||| ||| |||||||||||
Sbjct: 1305 tgttccttttgctccagct 1287

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  178 bits (90), Expect = 8e-42
 Identities = 132/146 (90%)
 Strand = Plus / Plus

                                                                           
Query: 208     aagaaggaggtggtgcaccacggcccatattagctaattcagggctgaccttttgtccag 267
               ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5246764 aagaagggggtggtgcaccacgacccatattagctaattcagggctgaccttttgtccag 5246823

                                                                           
Query: 268     cttcaactaaaatgctaataagatccttggcaaatctggcgttagcagccgtgaaaaagg 327
               ||||  |||  ||| | || |||||||||||||||||||| |||||||| |||||||| |
Sbjct: 5246824 cttcttctagtatgttgatcagatccttggcaaatctggcattagcagcagtgaaaaacg 5246883

                                         
Query: 328     tgtaagctgtccctgttgctccagct 353
               |||||||||| ||| |||||||||||
Sbjct: 5246884 tgtaagctgttccttttgctccagct 5246909



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 130/159 (81%), Gaps = 4/159 (2%)
 Strand = Plus / Plus

                                                                           
Query: 43      ataaatccacctttaccgggcactagccaaaagatccagtgagccggaaataca--taat 100
               ||||||| ||||||||||  || |||  ||||||| ||||||||| ||||||||  ||  
Sbjct: 5246452 ataaatctacctttaccgatcattagttaaaagattcagtgagccagaaatacacatagc 5246511

                                                                           
Query: 101     catccacaaagaaaggtcacatatcactctttgcaacaactgaatattttaacgtcagct 160
               |||||||||||||||| || | ||  |||| ||||| |||  || || | ||  ||||||
Sbjct: 5246512 catccacaaagaaaggccaaacattgctctctgcaataac--aacatatgaaaatcagct 5246569

                                                      
Query: 161     ccatgaacggccacctccatgccctctgtatctatcacg 199
               |||||| ||||||||||||| |||||| |||||||||||
Sbjct: 5246570 ccatgaccggccacctccataccctctatatctatcacg 5246608

>dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0419B01
          Length = 149610

 Score =  178 bits (90), Expect = 8e-42
 Identities = 132/146 (90%)
 Strand = Plus / Plus

                                                                         
Query: 208   aagaaggaggtggtgcaccacggcccatattagctaattcagggctgaccttttgtccag 267
             ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 42015 aagaagggggtggtgcaccacgacccatattagctaattcagggctgaccttttgtccag 42074

                                                                         
Query: 268   cttcaactaaaatgctaataagatccttggcaaatctggcgttagcagccgtgaaaaagg 327
             ||||  |||  ||| | || |||||||||||||||||||| |||||||| |||||||| |
Sbjct: 42075 cttcttctagtatgttgatcagatccttggcaaatctggcattagcagcagtgaaaaacg 42134

                                       
Query: 328   tgtaagctgtccctgttgctccagct 353
             |||||||||| ||| |||||||||||
Sbjct: 42135 tgtaagctgttccttttgctccagct 42160



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 130/159 (81%), Gaps = 4/159 (2%)
 Strand = Plus / Plus

                                                                         
Query: 43    ataaatccacctttaccgggcactagccaaaagatccagtgagccggaaataca--taat 100
             ||||||| ||||||||||  || |||  ||||||| ||||||||| ||||||||  ||  
Sbjct: 41703 ataaatctacctttaccgatcattagttaaaagattcagtgagccagaaatacacatagc 41762

                                                                         
Query: 101   catccacaaagaaaggtcacatatcactctttgcaacaactgaatattttaacgtcagct 160
             |||||||||||||||| || | ||  |||| ||||| |||  || || | ||  ||||||
Sbjct: 41763 catccacaaagaaaggccaaacattgctctctgcaataac--aacatatgaaaatcagct 41820

                                                    
Query: 161   ccatgaacggccacctccatgccctctgtatctatcacg 199
             |||||| ||||||||||||| |||||| |||||||||||
Sbjct: 41821 ccatgaccggccacctccataccctctatatctatcacg 41859

>gb|BT016697.1| Zea mays clone Contig530 mRNA sequence
          Length = 1750

 Score =  153 bits (77), Expect = 5e-34
 Identities = 170/201 (84%)
 Strand = Plus / Minus

                                                                        
Query: 146  attttaacgtcagctccatgaacggccacctccatgccctctgtatctatcacgataacc 205
            |||| ||||||| ||||| || |||||||| |||| ||| || ||||||||||| |||||
Sbjct: 1416 atttgaacgtcaactccacgatcggccacccccataccccctatatctatcacggtaacc 1357

                                                                        
Query: 206  caaagaaggaggtggtgcaccacggcccatattagctaattcagggctgaccttttgtcc 265
              |||| ||||| ||||||||||| ||||||  ||||||||||| |||||||||||| ||
Sbjct: 1356 tgaagatggaggaggtgcaccacgacccatagcagctaattcagagctgaccttttggcc 1297

                                                                        
Query: 266  agcttcaactaaaatgctaataagatccttggcaaatctggcgttagcagccgtgaaaaa 325
            ||||||  | | |||  ||||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 1296 agcttcttccagaatattaataagttccttggcaaatctggcattagctgcagtgaaaaa 1237

                                 
Query: 326  ggtgtaagctgtccctgttgc 346
            |||||| ||||| ||| ||||
Sbjct: 1236 ggtgtacgctgttccttttgc 1216

>gb|AY110750.1| Zea mays CL9052_1 mRNA sequence
          Length = 1387

 Score =  113 bits (57), Expect = 4e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                       
Query: 189 tatctatcacgataacccaaagaaggaggtggtgcaccacggcccatattagctaattca 248
           ||||||||||| |||||  |||| ||||| ||||||||||| ||||||  ||||||||||
Sbjct: 333 tatctatcacggtaacctgaagatggaggaggtgcaccacgacccatagcagctaattca 392

                                                                       
Query: 249 gggctgaccttttgtccagcttcaactaaaatgctaataagatccttggcaaatctggcg 308
           | |||||||||||||||||||||  | | |||  ||||||| ||||||||||||||||| 
Sbjct: 393 gagctgaccttttgtccagcttcttccagaatattaataagttccttggcaaatctggca 452

                
Query: 309 ttagc 313
           |||||
Sbjct: 453 ttagc 457

>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete sequence
          Length = 132817

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 279    atgctaataagatccttggcaaatctggcgttagc 313
              ||||||||||| ||||| ||||||||||| |||||
Sbjct: 112575 atgctaataagttcctttgcaaatctggcattagc 112541

>gb|AY617261.1| Sterkiella histriomuscorum clone UGC1O0001_I02_F genomic sequence
          Length = 792

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 93  tacataatcatccacaaagaa 113
           |||||||||||||||||||||
Sbjct: 518 tacataatcatccacaaagaa 498

>gb|AC162304.4| Mus musculus chromosome 7, clone RP23-350J16, complete sequence
          Length = 219899

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 103    tccacaaagaaaggtcacatatcactctt 131
              |||||||||||||| |||||||| |||||
Sbjct: 102700 tccacaaagaaaggacacatatctctctt 102728

>ref|XM_679599.1| PREDICTED: Danio rerio similar to catenin (cadherin-associated
            protein), delta 1 (LOC556726), mRNA
          Length = 1404

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 199  gataacccaaagaaggaggtg 219
            |||||||||||||||||||||
Sbjct: 1108 gataacccaaagaaggaggtg 1128

>gb|AC051625.6|AC051625 Genomic Sequence For Arabidopsis thaliana Clone F19N02 From Chromosome
             V, complete sequence
          Length = 116461

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 94    acataatcatccacaaagaaaggtc 118
             ||||||||| |||||||||||||||
Sbjct: 85718 acataatcacccacaaagaaaggtc 85742

>gb|AC069552.5|AC069552 Genomic Sequence For Arabidopsis thaliana Clone F17M07 From Chromosome
             V, complete sequence
          Length = 105743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 94    acataatcatccacaaagaaaggtc 118
             ||||||||| |||||||||||||||
Sbjct: 47717 acataatcacccacaaagaaaggtc 47741

>dbj|AB046439.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F26J23
          Length = 94609

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 94    acataatcatccacaaagaaaggtc 118
             ||||||||| |||||||||||||||
Sbjct: 30580 acataatcacccacaaagaaaggtc 30556

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 155     tcagctccatgaacggccacctcca 179
               |||| ||||||||||||||||||||
Sbjct: 5660415 tcaggtccatgaacggccacctcca 5660439

>gb|AC089991.2| Bos taurus clone RP42-194K3, complete sequence
          Length = 159196

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ccacaaagaaaggtcacata 123
             ||||||||||||||||||||
Sbjct: 46211 ccacaaagaaaggtcacata 46230

>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    ccacaaagaaaggtcacata 123
              ||||||||||||||||||||
Sbjct: 802772 ccacaaagaaaggtcacata 802791

>ref|XM_693374.1| PREDICTED: Danio rerio similar to activator of S phase kinase
           (LOC569954), mRNA
          Length = 2612

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 331 aagctgtccctgttgctcca 350
           ||||||||||||||||||||
Sbjct: 985 aagctgtccctgttgctcca 966

>dbj|BS000105.1| Pan troglodytes chromosome 22 clone:RP43-117B17, map 22, complete
             sequences
          Length = 164236

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   tttgcaacaactgaatattt 149
             ||||||||||||||||||||
Sbjct: 76729 tttgcaacaactgaatattt 76748

>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  tttgcaacaactgaatattt 149
            ||||||||||||||||||||
Sbjct: 6970 tttgcaacaactgaatattt 6989

>dbj|AP000223.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
             clone:S11, complete sequence
          Length = 84031

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   tttgcaacaactgaatattt 149
             ||||||||||||||||||||
Sbjct: 35967 tttgcaacaactgaatattt 35986

>dbj|AP000138.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone
            B2291C14-R44F3, segment 3/10, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  tttgcaacaactgaatattt 149
            ||||||||||||||||||||
Sbjct: 6266 tttgcaacaactgaatattt 6285

>dbj|AB051346.1| Homo sapiens gene for mitochondrial ribosomal protein L39, partial
           cds
          Length = 192

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 tttgcaacaactgaatattt 149
           ||||||||||||||||||||
Sbjct: 106 tttgcaacaactgaatattt 87

>dbj|AP000086.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533
            region, segment 3/7
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  tttgcaacaactgaatattt 149
            ||||||||||||||||||||
Sbjct: 6266 tttgcaacaactgaatattt 6285


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,339,053
Number of Sequences: 3902068
Number of extensions: 3339053
Number of successful extensions: 65288
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65203
Number of HSP's gapped (non-prelim): 79
length of query: 353
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 331
effective length of database: 17,147,199,772
effective search space: 5675723124532
effective search space used: 5675723124532
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)