>PRM2_RAT (P11248) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 104

 Score = 35.8 bits (81), Expect = 0.063
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -3

Query: 470 PIHLQAQGPGLGRLGHDQGQGNRLQHQGQDRCRHTIRQHEVAHRPCRRNH 321
           P   Q QGPG      +QGQG  L  +  +    T R H   HR C+R H
Sbjct: 9   PSEGQHQGPGQDHEREEQGQGQELSPERVEDYGRTERGHHHRHRRCKRLH 58

>PRM2_RATFU (Q91VE1) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 105

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = -3

Query: 452 QGPGLGRLGHDQGQGNRLQHQGQDRCRHTIRQHEVAHRPCRRN-----HSPQEG*RR*RG 288
           QGPG      +QGQG  L  +  +    T R H   HR C R      H  +   RR R 
Sbjct: 15  QGPGQDHEREEQGQGQELSPERVEDYGRTHRGHH-RHRRCSRKRLHRIHKRRRSCRRRRR 73

Query: 287 VKCCY 273
             CC+
Sbjct: 74  HSCCH 78

>EBP2_YEAST (P36049) rRNA-processing protein EBP2 (EBNA1-binding protein|
           homolog)
          Length = 427

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 78  ERIHIGWVPTTNTEHRSIKTRTMFGRHNQQRYHELEREFSWY 203
           ER+ + W   +  EH+S+ + T    H +  Y + ERE ++Y
Sbjct: 206 ERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDTERELAFY 247

>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor|
          Length = 1385

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
 Frame = +2

Query: 221  IPLQHPPLRPV*LSCMFSNSTSXXXXXXXXXEASGSADMVDGQLHVAEWCVDIDLALD-- 394
            +P+  PP  P+ L      +T            + S D  DG L VA+     D A+D  
Sbjct: 826  MPVLPPP--PLALQMAARRATGAGRRRRRGASTTASMDGDDGALSVADGSSSADAAIDPA 883

Query: 395  ------AVAGSPAPDHVPDGRAQVLGPEGEWDLH 478
                  A AG PAP   P     ++   G W  H
Sbjct: 884  SGASPSAAAGPPAPSARPRHNWLLVQALGNWGKH 917

>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC|
           2.7.11.25)
          Length = 1011

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = -2

Query: 483 PRCRSHSPSGPRTWARPSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSAEP 322
           P  RS SPS PR   RPS   S +  P+      + ST  S T  CP   S  P
Sbjct: 631 PGKRSRSPSSPRHAPRPSDAPSASPTPS------ANSTTQSQTFPCPQAPSQHP 678

>CT045_HUMAN (Q9Y3B1) Protein C20orf45|
          Length = 194

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +1

Query: 7   KPHEQQRGDGIYSQVCFHLTKLTRKEYTLDGFPQRTLSTEA*KHGRCSDDTINKDTMS*S 186
           KPH Q     + +Q      K       L+G    T+S+ A K     +  I+K      
Sbjct: 113 KPHPQDPEKTVLTQEAIITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAEIE 172

Query: 187 ESSAGTKGIGRHPLAASSLA 246
           E +A  +G  R P+AA++ A
Sbjct: 173 ELTASARGTIRTPMAAAAFA 192

>MEIS3_MOUSE (P97368) Homeobox protein Meis3 (Meis1-related protein 2)|
          Length = 378

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 488 DHQDADPIHLQAQGPGLGRLGHDQGQGNRLQHQGQD 381
           DH+D+  +HL   GP  G L    G  +  Q  G D
Sbjct: 209 DHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLD 244

>MEIS3_HUMAN (Q99687) Homeobox protein Meis3 (Meis1-related protein 2)|
          Length = 375

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 488 DHQDADPIHLQAQGPGLGRLGHDQGQGNRLQHQGQD 381
           DH+D+  +HL   GP  G L    G  +  Q  G D
Sbjct: 206 DHEDSGSVHLGTPGPSSGGLASQSGDNSSDQGDGLD 241

>CT045_MOUSE (Q9CYY7) Protein C20orf45 homolog|
          Length = 195

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +1

Query: 1   TKKPHEQQRGDGIYSQVCFHLTKLTRKEYTLDGFPQRTLSTEA*KHGRCSDDTINKDTMS 180
           T KPH Q     + +Q      K       L+G    T+S+ A K     +  I+K    
Sbjct: 111 TYKPHLQDPEKTVLTQEALITVKGVSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAE 170

Query: 181 *SESSAGTKGIGRHPLAASS 240
             E +A  +G  R P+AA++
Sbjct: 171 IEELAASARGSIRTPMAAAA 190

>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 489 GSPRCRSHSPSGPRTWARPSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSA 328
           G PR  + +P  PRTW R SG   G   P    R    +    A    P T +A
Sbjct: 520 GCPRS-ARNPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAAPGAPGTPAA 572



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 489 GSPRCRSHSPSGPRTWARPSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSA 328
           G PR  + +P  PRTW R SG   G   P    R    +    A    P T +A
Sbjct: 395 GCPRS-ARNPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAAPGAPGTPAA 447



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 489 GSPRCRSHSPSGPRTWARPSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSA 328
           G PR  + +P  PRTW R SG   G   P    R    +    A    P T +A
Sbjct: 270 GCPRS-ARNPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAAPGAPGTPAA 322

>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -2

Query: 489 GSPRCRSHSPSGPRTWARPSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSAEPLASR 310
           GSPR    +P GP   A   G    A  PA  S  R+  T        P+T     L +R
Sbjct: 725 GSPRLVRRAPPGPLPPAASPGP-PAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPAR 783

Query: 309 RMTTMTR 289
           R++  +R
Sbjct: 784 RLSRASR 790

>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -2

Query: 489 GSPRCRSHSPSGPRTWARPSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSAEPLASR 310
           GSPR    +P GP   A   G    A  PA  S  R+  T        P+T     L +R
Sbjct: 725 GSPRLVRRAPPGPLPPAASPGP-PAASPPAAPSSPRAPRTSPYGVPGSPATRVGPALPAR 783

Query: 309 RMTTMTR 289
           R++  +R
Sbjct: 784 RLSRASR 790

>DZIP1_BRARE (Q7T019) Zinc finger protein Dzip1 (DAZ-interacting protein 1|
           homolog) (Iguana protein)
          Length = 898

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -2

Query: 435 PSGT*SGAGEPATASRARSMSTHHSAT*SCPSTMSAEPLASRRMTT 298
           P GT S AG P+  S  +S  +  S +   PSTMS  PL S   +T
Sbjct: 15  PPGTHSSAGIPSLLSSPQSQPSSGSQSRPAPSTMSG-PLTSSGAST 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,697,800
Number of Sequences: 219361
Number of extensions: 1546164
Number of successful extensions: 3857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3855
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)