ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 prec... 29 3.3
2RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination prote... 28 7.4
3CT107_HUMAN (Q5JX69) Protein C20orf107 precursor 28 7.4
4PGSB2_DROSI (Q70PW6) Peptidoglycan-recognition protein-SB2 precu... 28 7.4
5MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 27 9.7
6IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precu... 27 9.7
7Y147_HAEIN (P44543) Putative TRAP transporter permease protein H... 27 9.7

>GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 precursor|
           (Endothelin B receptor-like protein 1) (ETBR-LP-1)
           (Parkin-associated endothelin receptor-like receptor)
           (PAELR)
          Length = 613

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 250 RQTQGSGLRPWPSWALPNAPGSRP 321
           R+ QG+     PSW LP APG  P
Sbjct: 73  REEQGAAFLAGPSWDLPAAPGRDP 96



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>RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination protein O)|
          Length = 234

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 300 WQCPRRPRPKATSLRLAYITNLPEHTHSWLGSSIFV 193
           WQ   +P P+  SL L ++  +PE  H +  SS+F+
Sbjct: 103 WQ--EKPSPQLFSLFLNFLQRIPETPHPYFFSSMFL 136



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>CT107_HUMAN (Q5JX69) Protein C20orf107 precursor|
          Length = 171

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 240 NLPEHTHSWLGS 205
           NLPEHT  WLGS
Sbjct: 47  NLPEHTQGWLGS 58



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>PGSB2_DROSI (Q70PW6) Peptidoglycan-recognition protein-SB2 precursor (EC|
           3.5.1.28)
          Length = 182

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 209 PSQL*VCSGKLVMYA-KRREVALGLGLLGHCQT 304
           PSQ+   +  L+  A +RR+V+    L+GHCQT
Sbjct: 126 PSQMLQAARTLIQIAVQRRQVSPNYSLVGHCQT 158



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 330 CSWRTTSGSVWQCPRRPRPKATSLR-LAYITNLPEHTHSWLGSSIFV 193
           CS  T SG +WQC   P P   S++  A+I+   E  +   G   +V
Sbjct: 405 CSSCTCSGGLWQCQDLPCPGTCSVQGGAHISTYDEKLYDLHGDCSYV 451



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>IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (xIGF-1R) (xIGFR) [Contains: Insulin-like
           growth factor 1 receptor alpha chain; Insulin-like
           growth factor 1 receptor beta chain]
          Length = 1358

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 108 YIQGLAVCITPAFCGTCGPNV 46
           +I GL +C+ PA    CGPN+
Sbjct: 12  WILGLLLCLGPAAAKVCGPNM 32



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>Y147_HAEIN (P44543) Putative TRAP transporter permease protein HI0147|
          Length = 633

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 291 PRRPRPKATSLRLAYITNLPEHTHSWLGSSIFVAVF 184
           P  P   +  + + YI  L E    WLG ++F+A+F
Sbjct: 6   PTFPYSSSNGVSMKYINKLEE----WLGGALFIAIF 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,748,951
Number of Sequences: 219361
Number of extensions: 1036718
Number of successful extensions: 2372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2371
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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