ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 127 1e-29
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 106 4e-23
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 56 7e-08
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 50 3e-06
5MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment) 30 5.3
6HHIP_HUMAN (Q96QV1) Hedgehog-interacting protein precursor (HHIP... 29 6.9
7RIP_RAT (Q4G2Y1) RPA-interacting protein 29 6.9
8TRSF_DROER (Q23935) Female-specific protein transformer 29 9.0
9EYA4_HUMAN (O95677) Eyes absent homolog 4 (EC 3.1.3.48) 29 9.0

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score =  127 bits (320), Expect = 1e-29
 Identities = 68/130 (52%), Positives = 78/130 (60%), Gaps = 7/130 (5%)
 Frame = -3

Query: 523 NAGPQFFNARLKETVARLRVALPEAAFTYVDVYAATYKLMSEAKKFGFGDPLRVCCGYGG 344
           N   Q FN +LKE VA+LR  LP A F +VD+Y+  Y L SE +K GF  PL  CCGY G
Sbjct: 251 NEVAQHFNHKLKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGFEFPLITCCGY-G 309

Query: 343 GQYNFDKNIRCGDPVLEGK-------SCEDPSKSVSWDGVHLTEAAYKFIFDQIVDGALS 185
           G+YNF     CGD V           SC  PS  V+WDG H TEAA ++ FDQI  GA S
Sbjct: 310 GKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFS 369

Query: 184 DPPVPLRGAC 155
           DPPVPL  AC
Sbjct: 370 DPPVPLNMAC 379



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score =  106 bits (264), Expect = 4e-23
 Identities = 56/113 (49%), Positives = 71/113 (62%), Gaps = 7/113 (6%)
 Frame = -3

Query: 511 QFFNARLKETVARLRVALPEAAFTYVDVYAATYKLMSEAKKFGFGDPLRVCCGYGGGQYN 332
           Q FN  LK+ V  LR +L EAA TYVDVY+  ++L   A+  GF   L  CCG+ GG+YN
Sbjct: 253 QQFNHALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGFKGSLVSCCGH-GGKYN 311

Query: 331 FDKNIRC-------GDPVLEGKSCEDPSKSVSWDGVHLTEAAYKFIFDQIVDG 194
           ++K I C       G  V  GK C++P K+V WDGVH T+AA KFIFD+I  G
Sbjct: 312 YNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG 364



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 31/103 (30%), Positives = 47/103 (45%)
 Frame = -3

Query: 523 NAGPQFFNARLKETVARLRVALPEAAFTYVDVYAATYKLMSEAKKFGFGDPLRVCCGYGG 344
           N   Q FN++L   + +L   LP + F Y+D+Y    +++     +GF +  + CC  G 
Sbjct: 424 NYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPCCKTG- 482

Query: 343 GQYNFDKNIRCGDPVLEGKSCEDPSKSVSWDGVHLTEAAYKFI 215
                     C       K C + S  + WDGVH T+ AYK I
Sbjct: 483 ---LLSAGALCKKST--SKICPNTSSYLFWDGVHPTQRAYKTI 520



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
 Frame = -3

Query: 523 NAGPQFFNARLKETVARLRVALPEAAFTYVDVYAATYKLMSEAKKFGFGDPLRVCCGYG- 347
           N   Q FN++L   + +L   LP +   Y D+Y+   K++   + +GF +  + CC  G 
Sbjct: 341 NYAAQLFNSKLVIILGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGL 400

Query: 346 --GGQYNFDKNIRCGDPVLEGKSCEDPSKSVSWDGVHLTEAAYK 221
             GG +  ++ +         K+  + S  + WDG+H ++ AY+
Sbjct: 401 TKGGVFCKERTL---------KNMSNASSYLFWDGLHPSQRAYE 435



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>MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment)|
          Length = 1150

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 123  NEHHAHCPLPWQAPR--KGTGGSERAPSTIWSKMNL*AASVKCTPSQLTLFDGSSQDFPS 296
            NE+   CP P   P    G  G E++P  +W+     A   KCT ++    D   ++ PS
Sbjct: 915  NENKTGCPAPLPPPPVCHGPLGEEKSPGDVWT-----ANCHKCTCTEAKTVDCKPKECPS 969



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>HHIP_HUMAN (Q96QV1) Hedgehog-interacting protein precursor (HHIP) (HIP)|
          Length = 700

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
 Frame = -3

Query: 511 QFFNARLKETVARLRVALPEAAFTYVDVYAATYKLMSEAKKFGFGDPLRVCCGYGGGQYN 332
           Q  N +L + V   R  +PE     V          S   + G+  P   CC   G + +
Sbjct: 573 QTHNGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGD 632

Query: 331 FDKNIRCGDPVLEGKSCEDPSKSVSWDGV----------HLTEAAYKFIFDQIVD 197
           F +  +C      G  C  P+K +   G           ++       I DQI+D
Sbjct: 633 FCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDRNIRRVTRAGILDQIID 687



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>RIP_RAT (Q4G2Y1) RPA-interacting protein|
          Length = 219

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 108 IQNLINEHHAHCPLPWQAPR-KGTGGSERAPSTIWS 212
           ++  +NEH AHCP     P    TGG+E  PS + S
Sbjct: 176 LEGNVNEHSAHCP---HIPEFSVTGGTEEKPSLLMS 208



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>TRSF_DROER (Q23935) Female-specific protein transformer|
          Length = 178

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 282 QDFPSRTGSPHRMFLSKLYWPPPYPQHTRRGSPKPNFLAS 401
           QDF   +G   R    +L  PPP+P    R   +P FL +
Sbjct: 126 QDFYGMSGMQQRFGYQRLPHPPPFPPAPYRFRQRPPFLGA 165



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>EYA4_HUMAN (O95677) Eyes absent homolog 4 (EC 3.1.3.48)|
          Length = 639

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 75  LEYGCLEK*SYIQNLINEHHAHCPLPWQAPRKGTGGSERAPS-TIWSKMNL*AASVKCTP 251
           L+ GCL   SY            P  +Q P     GS  APS TI++  ++         
Sbjct: 215 LQSGCL---SYSPGFSTPQPGQTPYSYQMP-----GSSFAPSSTIYANNSV--------- 257

Query: 252 SQLTLFDGSSQDFPSRT 302
           S  T F GS QD+PS T
Sbjct: 258 SNSTNFSGSQQDYPSYT 274


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,141,714
Number of Sequences: 219361
Number of extensions: 1682742
Number of successful extensions: 4513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4504
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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