Clone Name | rbart12f04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 101 bits (51), Expect = 2e-18 Identities = 147/179 (82%) Strand = Plus / Minus Query: 309 ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacacacgc 368 ||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||| || Sbjct: 1081 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacaccagc 1022 Query: 369 agaggatccccaaaaccgaactttttggcttcgctcatcaacttgtacgtggcggcgtac 428 || || ||||| || |||| || ||||| | ||| || | | ||||| |||||| ||| Sbjct: 1021 agcgggtccccgaatccgagctgcttggcctggctgatgagcctgtacttggcggagtag 962 Query: 429 acgtcgacgtaggtgaaggcggcctcggggagagccaccctgagcctcgccacggtctc 487 |||||||||||||||| ||||| || ||||| ||| |||| |||| |||||||||| Sbjct: 961 acgtcgacgtaggtgagcgcggcgtccgggagcgccgcccttagccggtccacggtctc 903 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Minus Query: 171 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 230 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 1240 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1181 Query: 231 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 290 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 1180 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1121 Query: 291 ccc 293 ||| Sbjct: 1120 ccc 1118
>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full insert sequence Length = 1439 Score = 101 bits (51), Expect = 2e-18 Identities = 147/179 (82%) Strand = Plus / Minus Query: 309 ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacacacgc 368 ||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||| || Sbjct: 1080 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacaccagc 1021 Query: 369 agaggatccccaaaaccgaactttttggcttcgctcatcaacttgtacgtggcggcgtac 428 || || ||||| || |||| || ||||| | ||| || | | ||||| |||||| ||| Sbjct: 1020 agcgggtccccgaatccgagctgcttggcctggctgatgagcctgtacttggcggagtag 961 Query: 429 acgtcgacgtaggtgaaggcggcctcggggagagccaccctgagcctcgccacggtctc 487 |||||||||||||||| ||||| || ||||| ||| |||| |||| |||||||||| Sbjct: 960 acgtcgacgtaggtgagcgcggcgtccgggagcgccgcccttagccggtccacggtctc 902 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Minus Query: 171 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 230 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 1239 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1180 Query: 231 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 290 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 1179 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 1120 Query: 291 ccc 293 ||| Sbjct: 1119 ccc 1117
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 309 ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 364 ||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||| Sbjct: 23761001 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 23761056 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 171 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 230 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 23760842 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 23760901 Query: 231 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 290 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 23760902 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 23760961 Query: 291 ccc 293 ||| Sbjct: 23760962 ccc 23760964 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 383 accgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggt 442 ||||| ||| ||||| ||||| |||| ||||||| |||||| ||| |||||||||||||| Sbjct: 23767340 accgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggt 23767399 Query: 443 gaaggcggcctcgg 456 ||| ||||| |||| Sbjct: 23767400 gaacgcggcgtcgg 23767413 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Plus Query: 170 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 229 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 23767024 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 23767083 Query: 230 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 289 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 23767084 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 23767143 Query: 290 cccc 293 |||| Sbjct: 23767144 cccc 23767147 Score = 48.1 bits (24), Expect = 0.029 Identities = 63/76 (82%) Strand = Plus / Plus Query: 412 tgtacgtggcggcgtacacgtcgacgtaggtgaaggcggcctcggggagagccaccctga 471 ||||| |||||| ||| |||||||||||||||| ||||| || ||||| ||| |||| | Sbjct: 23761194 tgtacttggcggagtagacgtcgacgtaggtgagcgcggcgtccgggagcgccgccctta 23761253 Query: 472 gcctcgccacggtctc 487 ||| |||||||||| Sbjct: 23761254 gccggtccacggtctc 23761269
>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1113_E01 Length = 73706 Score = 79.8 bits (40), Expect = 8e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 309 ccgcaccggatgttcttgtcgaagttgtactggccgccgccgtacccgcaacacac 364 ||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||| Sbjct: 15931 ccgcaccggatgtccctgtcgaagttgtactcgccgccgccgtacccgcagcacac 15986 Score = 77.8 bits (39), Expect = 3e-11 Identities = 102/123 (82%) Strand = Plus / Plus Query: 171 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 230 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 15772 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 15831 Query: 231 gcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttc 290 ||||| || ||||||||||| ||||||||||||||| |||| ||||| ||||| |||||| Sbjct: 15832 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtcgtcgcacgacttc 15891 Query: 291 ccc 293 ||| Sbjct: 15892 ccc 15894 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 383 accgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggt 442 ||||| ||| ||||| ||||| |||| ||||||| |||||| ||| |||||||||||||| Sbjct: 22270 accgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggt 22329 Query: 443 gaaggcggcctcgg 456 ||| ||||| |||| Sbjct: 22330 gaacgcggcgtcgg 22343 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Plus Query: 170 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 229 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 21954 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 22013 Query: 230 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 289 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 22014 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 22073 Query: 290 cccc 293 |||| Sbjct: 22074 cccc 22077 Score = 48.1 bits (24), Expect = 0.029 Identities = 63/76 (82%) Strand = Plus / Plus Query: 412 tgtacgtggcggcgtacacgtcgacgtaggtgaaggcggcctcggggagagccaccctga 471 ||||| |||||| ||| |||||||||||||||| ||||| || ||||| ||| |||| | Sbjct: 16124 tgtacttggcggagtagacgtcgacgtaggtgagcgcggcgtccgggagcgccgccctta 16183 Query: 472 gcctcgccacggtctc 487 ||| |||||||||| Sbjct: 16184 gccggtccacggtctc 16199
>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds Length = 1471 Score = 75.8 bits (38), Expect = 1e-10 Identities = 95/114 (83%) Strand = Plus / Minus Query: 180 gggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagctgcctctgtc 239 ||||| ||||| |||||| | |||||||||||||| | ||| |||| || ||||| || Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168 Query: 240 aagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagacttcccc 293 |||||||| || ||||||||||| ||||| || |||| |||||| ||||||||| Sbjct: 1167 aagtgcacgccgtcccagctcaccctcttggaggggttctcgcacgacttcccc 1114 Score = 67.9 bits (34), Expect = 3e-08 Identities = 133/166 (80%) Strand = Plus / Minus Query: 330 aagttgtactggccgccgccgtacccgcaacacacacgcagaggatccccaaaaccgaac 389 ||||||||| ||||||||||||||||||| || ||||||| || | || |||| | Sbjct: 1056 aagttgtaccggccgccgccgtacccgcagcatgtcagcagagggtcgtcgaagccgagc 997 Query: 390 tttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtgaaggcg 449 || ||||| | ||| || | ||||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 996 ttcttggcctggctgatgagcttgtacttggcggtgtagacgtcgacgtaggtgaacgcg 937 Query: 450 gcctcggggagagccaccctgagcctcgccacggtctccttgagcc 495 || || ||| | | | || ||| |||||||| ||||||||||||| Sbjct: 936 gcgtcagggtgcgtcttccggaggctcgccacagtctccttgagcc 891
>ref|XM_478921.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1757 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 384 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 443 |||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||| Sbjct: 1312 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 1253 Query: 444 aaggcggcctcgg 456 || ||||| |||| Sbjct: 1252 aacgcggcgtcgg 1240 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Minus Query: 170 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 229 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488 Query: 230 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 289 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428 Query: 290 cccc 293 |||| Sbjct: 1427 cccc 1424
>ref|XM_478922.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1115 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 384 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 443 |||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||| Sbjct: 661 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 602 Query: 444 aaggcggcctcgg 456 || ||||| |||| Sbjct: 601 aacgcggcgtcgg 589 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Minus Query: 170 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 229 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 896 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 837 Query: 230 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 289 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 836 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 777 Query: 290 cccc 293 |||| Sbjct: 776 cccc 773
>dbj|AK099293.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135D02, full insert sequence Length = 1126 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 384 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 443 |||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||| Sbjct: 681 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 622 Query: 444 aaggcggcctcgg 456 || ||||| |||| Sbjct: 621 aacgcggcgtcgg 609 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Minus Query: 170 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 229 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 916 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 857 Query: 230 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 289 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 856 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 797 Query: 290 cccc 293 |||| Sbjct: 796 cccc 793
>dbj|AK073754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067M09, full insert sequence Length = 1757 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 384 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 443 |||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||| Sbjct: 1312 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 1253 Query: 444 aaggcggcctcgg 456 || ||||| |||| Sbjct: 1252 aacgcggcgtcgg 1240 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Minus Query: 170 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 229 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 1547 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 1488 Query: 230 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 289 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 1487 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 1428 Query: 290 cccc 293 |||| Sbjct: 1427 cccc 1424
>dbj|AK060131.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B10, full insert sequence Length = 1117 Score = 65.9 bits (33), Expect = 1e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 384 ccgaactttttggcttcgctcatcaacttgtacgtggcggcgtacacgtcgacgtaggtg 443 |||| ||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||| Sbjct: 663 ccgagcttcttggcgtcgctgatcagcttgtacttggcggagtagacgtcgacgtaggtg 604 Query: 444 aaggcggcctcgg 456 || ||||| |||| Sbjct: 603 aacgcggcgtcgg 591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 100/124 (80%) Strand = Plus / Minus Query: 170 aggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagc 229 ||||||||| ||||||||||| |||| | ||||||||||||| | ||| |||| || Sbjct: 898 aggcaccggcgggtcggagagcttgccgccggcgatctggtcgaacacgaacttgttcgc 839 Query: 230 tgcctctgtcaagtgcaccccatcccagctcacgctcttcgatgggtcctcgcaagactt 289 ||||| || |||||||| || ||||||||||| | |||| ||||| ||||| ||||| Sbjct: 838 cgcctcggtgaagtgcacgccgtcccagctcacccgcttcagcgggtcgtcgcacgactt 779 Query: 290 cccc 293 |||| Sbjct: 778 cccc 775
>gb|AY107095.1| Zea mays PCO131316 mRNA sequence Length = 1042 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 410 cttgtacgtggcggcgtacacgtcgacgtaggtgaaggcggcctcggggagagccaccct 469 ||||||| |||||| ||| ||||||||||||||||| ||||| || ||| | | | || Sbjct: 989 cttgtacttggcggtgtagacgtcgacgtaggtgaacgcggcgtcagggtgcgtcttccg 930 Query: 470 gagcctcgccacggtctccttgagcc 495 ||| |||||||| ||||||||||||| Sbjct: 929 gaggctcgccacagtctccttgagcc 904
>ref|NM_190605.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1839 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ctggccgccgccgtacccgc 357 |||||||||||||||||||| Sbjct: 42 ctggccgccgccgtacccgc 23
>gb|AC069541.5| Homo sapiens chromosome 10 clone RP11-389O2, complete sequence Length = 158568 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 20 gatattatctcattgcagattttatttg 47 |||| ||||||||||||| ||||||||| Sbjct: 140819 gataatatctcattgcagtttttatttg 140792
>gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal, mRNA (cDNA clone IMAGE:5307739), partial cds Length = 1322 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cattgccctttgccctggca 157 |||||||||||||||||||| Sbjct: 1183 cattgccctttgccctggca 1164
>emb|AL607042.10| Human DNA sequence from clone RP11-413G1 on chromosome 10, complete sequence Length = 53085 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 gatattatctcattgcagattttatttg 47 |||| ||||||||||||| ||||||||| Sbjct: 38619 gataatatctcattgcagtttttatttg 38646
>gb|AC091772.5| Homo sapiens chromosome 10 clone RP11-257L6, complete sequence Length = 158559 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 20 gatattatctcattgcagattttatttg 47 |||| ||||||||||||| ||||||||| Sbjct: 17751 gataatatctcattgcagtttttatttg 17778
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49 Length = 199075 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tggaaaaataatcctacatt 110 |||||||||||||||||||| Sbjct: 9283 tggaaaaataatcctacatt 9264
>emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project) Length = 110102 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tggaaaaataatcctacatt 110 |||||||||||||||||||| Sbjct: 90461 tggaaaaataatcctacatt 90442
>gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequence Length = 53218 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 cattgccctttgccctggca 157 |||||||||||||||||||| Sbjct: 16968 cattgccctttgccctggca 16987
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ctggccgccgccgtacccgc 357 |||||||||||||||||||| Sbjct: 36442720 ctggccgccgccgtacccgc 36442739
>gb|AC140059.3| Homo sapiens 3 BAC RP11-118N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 103479 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tctcattgcagattttattt 46 |||||||||||||||||||| Sbjct: 64578 tctcattgcagattttattt 64559
>gb|AC091657.3| Rattus norvegicus strain Brown Norway clone RP31-29N16, complete sequence Length = 141898 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ggagagccaccctgagcctc 476 |||||||||||||||||||| Sbjct: 76542 ggagagccaccctgagcctc 76561
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0005H10 Length = 142885 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ctggccgccgccgtacccgc 357 |||||||||||||||||||| Sbjct: 94559 ctggccgccgccgtacccgc 94578
>emb|BX649232.1| Mouse DNA sequence from clone RP23-271J11 on chromosome 2, complete sequence Length = 71295 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gtaagctgcctctgtcaagt 243 |||||||||||||||||||| Sbjct: 8565 gtaagctgcctctgtcaagt 8584
>dbj|AP000346.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1572G7 Length = 151600 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ttatctcattgcagatttta 43 |||||||||||||||||||| Sbjct: 97560 ttatctcattgcagatttta 97541
>dbj|AB071333.1| Oryza sativa (japonica cultivar-group) gene for qSH-1, complete cds Length = 4496 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ctggccgccgccgtacccgc 357 |||||||||||||||||||| Sbjct: 491 ctggccgccgccgtacccgc 472
>dbj|AB071332.1| Oryza sativa (indica cultivar-group) gene for qSH-1, complete cds Length = 4486 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ctggccgccgccgtacccgc 357 |||||||||||||||||||| Sbjct: 491 ctggccgccgccgtacccgc 472
>dbj|AB071331.1| Oryza sativa (japonica cultivar-group) mRNA for qSH-1, complete cds Length = 2442 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ctggccgccgccgtacccgc 357 |||||||||||||||||||| Sbjct: 491 ctggccgccgccgtacccgc 472
>dbj|AB071330.1| Oryza sativa (indica cultivar-group) mRNA for qSH-1, complete cds Length = 2450 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 ctggccgccgccgtacccgc 357 |||||||||||||||||||| Sbjct: 491 ctggccgccgccgtacccgc 472 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,036,614 Number of Sequences: 3902068 Number of extensions: 4036614 Number of successful extensions: 73093 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72952 Number of HSP's gapped (non-prelim): 126 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)