ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart12f02 |
|---|---|
| Clone Library Name | barley_pub |
>ENG2_YEAST (Q12168) Endo-1,3(4)-beta-glucanase 2 (EC 3.2.1.6)| (Endo-1,4-beta-glucanase 2) (Endo-1,3-beta-glucanase 2) (Laminarinase-2) Length = 779 Score = 34.7 bits (78), Expect = 0.14 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +1 Query: 10 RVYVEFLNSP--SSTTHPIISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLE 183 R ++ +L SP S IS L +N SH I N CQL+ +P A+ C P+ Sbjct: 266 RNWILYLTSPDYSFPQDFQISLLDSNTIISSHKI-NGLICQLSADSVPSIDMAAGCYPVY 324 Query: 184 SDVVGQ 201 D+ GQ Sbjct: 325 CDLSGQ 330
>GATM_MOUSE (Q9D964) Glycine amidinotransferase, mitochondrial precursor (EC| 2.1.4.1) (L-arginine:glycine amidinotransferase) (Transamidinase) (AT) Length = 423 Score = 31.2 bits (69), Expect = 1.6 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Frame = +1 Query: 100 SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 207 S +NSC + THPLP P S + +PLE +VG+ E Sbjct: 45 SSRNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAE 84
>GATM_RAT (P50442) Glycine amidinotransferase, mitochondrial precursor (EC| 2.1.4.1) (L-arginine:glycine amidinotransferase) (Transamidinase) (AT) Length = 423 Score = 30.8 bits (68), Expect = 2.1 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%) Frame = +1 Query: 100 SIKNSCTCQ-LTTHPLP---PAHSASSCEPLESDVVGQVE 207 S +NSC + THPLP P S + +PLE +VG+ E Sbjct: 45 SSQNSCAAEDKATHPLPKDCPVSSYNEWDPLEEVIVGRAE 84
>IL2RB_RAT (P26896) Interleukin-2 receptor beta chain precursor (IL-2| receptor) (P70-75) (High affinity IL-2 receptor beta subunit) (CD122 antigen) Length = 537 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +1 Query: 22 EFLNSPSSTTHPIISYLHNNATCQSHSIKN-SCTCQLTTHPLPPAHSASSCEPLESDVV 195 E LN S H H N TC+ ++ S C L PLP + S +S + L VV Sbjct: 52 EALNVTSCHIHAKSDMRHWNKTCELTPVRQASWACNLILGPLPDSQSLTSVDLLSLSVV 110
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 398 PLFSPRPQSVTTPFSYSATSTLPPPST 478 P +P P + TTP + T+T PPP+T Sbjct: 1574 PTTTPSPPTTTTPSPPTITTTTPPPTT 1600 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 398 PLFSPRPQSVTTPFSYSATSTLPPPST 478 P +P P + TTP T+T PPP+T Sbjct: 1653 PTTTPSPPTTTTPSPPITTTTTPPPTT 1679
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +1 Query: 82 ATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQ 231 ATC+ ++ +N CT Q TT PL +SC P+ + +H Q Sbjct: 1459 ATCKLYTTQNKCTSQ-TTGPLSCLWFDNSCSPITDVTCSAIVQSGLDHAQ 1507
>RPOC1_SYNY3 (P74177) DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (RNAP| gamma subunit) (Transcriptase gamma chain) (RNA polymerase gamma subunit) Length = 626 Score = 30.0 bits (66), Expect = 3.5 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Frame = -1 Query: 489 LHSRVDGGGSVLVALYENGVVTDCGRGENKGKSLLNDHVVRRLEKVAAVRDGASARKAV- 313 L RVD G ++ + N + CG L V+ RL K+ V + +A+K + Sbjct: 350 LGKRVDYSGRSVIVVGPNLKIYQCGLPREMAIELFQPFVIHRLIKLGIVNNIKAAKKLIL 409 Query: 312 SGSVQFPLWDDFRATKCG-LVLFVQNSALQVLGVQHFD 202 G Q +W G V+ + L LG+Q F+ Sbjct: 410 KGDPQ--IWSVLEEVITGHPVMLNRAPTLHRLGIQAFE 445
>GCM2_DROME (Q9VLA2) Transcription factor glial cells missing 2 (Protein| glide-2) Length = 613 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +1 Query: 49 THPIISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCE 174 +H SYL ++ T +SH + S + PL + S++ CE Sbjct: 298 SHCTCSYLDDSTTARSHQLSQSSNYGTNSWPLSGSESSAPCE 339
>ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1| Length = 805 Score = 29.6 bits (65), Expect = 4.6 Identities = 28/107 (26%), Positives = 40/107 (37%) Frame = +1 Query: 55 PIISYLHNNATCQSHSIKNSCTCQLTTHPLPPAHSASSCEPLESDVVGQVEVLDAEHLQR 234 P I +H + + + + T PLP S S L R Sbjct: 612 PSIKMIHEDGPTTTAAAAPLASAAATRRPLPSRDSEFSLP-----------------LGR 654 Query: 235 RVLHEEDEAALGRAKVVPQRELDGPGHGLPGGRTVAHGGHLLQPAHD 375 R+ H + +A L AKV+P ++L G G GG G H L A + Sbjct: 655 RMSHAQHDARLLNAKVIP-KQLGKAGGGAAGGG--VGGAHALMNARN 698
>RPOC_BACHK (Q6HPR5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = -1 Query: 489 LHSRVDGGGSVLVALYENGVVTDCGRGENKGKSLLNDHVVRRLEKVAAVRDGASARKAVS 310 L RVD G ++ + N + CG + L V++ L + + SA++ + Sbjct: 332 LGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391 Query: 309 GSVQFPLWDDFRAT-KCGLVLFVQNSALQVLGVQHFD 202 VQ +WD + K VL + L LG+Q F+ Sbjct: 392 -RVQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427
>RPOC_BACCZ (Q63H97) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = -1 Query: 489 LHSRVDGGGSVLVALYENGVVTDCGRGENKGKSLLNDHVVRRLEKVAAVRDGASARKAVS 310 L RVD G ++ + N + CG + L V++ L + + SA++ + Sbjct: 332 LGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391 Query: 309 GSVQFPLWDDFRAT-KCGLVLFVQNSALQVLGVQHFD 202 VQ +WD + K VL + L LG+Q F+ Sbjct: 392 -RVQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427
>RPOC_BACCR (Q81J47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = -1 Query: 489 LHSRVDGGGSVLVALYENGVVTDCGRGENKGKSLLNDHVVRRLEKVAAVRDGASARKAVS 310 L RVD G ++ + N + CG + L V++ L + + SA++ + Sbjct: 332 LGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391 Query: 309 GSVQFPLWDDFRAT-KCGLVLFVQNSALQVLGVQHFD 202 VQ +WD + K VL + L LG+Q F+ Sbjct: 392 -RVQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427
>RPOC_BACC1 (Q73FA3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = -1 Query: 489 LHSRVDGGGSVLVALYENGVVTDCGRGENKGKSLLNDHVVRRLEKVAAVRDGASARKAVS 310 L RVD G ++ + N + CG + L V++ L + + SA++ + Sbjct: 332 LGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391 Query: 309 GSVQFPLWDDFRAT-KCGLVLFVQNSALQVLGVQHFD 202 VQ +WD + K VL + L LG+Q F+ Sbjct: 392 -RVQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427
>RPOC_BACAN (P77819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = -1 Query: 489 LHSRVDGGGSVLVALYENGVVTDCGRGENKGKSLLNDHVVRRLEKVAAVRDGASARKAVS 310 L RVD G ++ + N + CG + L V++ L + + SA++ + Sbjct: 332 LGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391 Query: 309 GSVQFPLWDDFRAT-KCGLVLFVQNSALQVLGVQHFD 202 VQ +WD + K VL + L LG+Q F+ Sbjct: 392 -RVQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427
>ZP1_RAT (O54766) Zona pellucida sperm-binding protein 1 precursor (Zona| pellucida glycoprotein 1) (Zp-1) Length = 617 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 386 SSDLPLFSPRPQSVTTPFSYSATSTLPPP 472 + D+ L P+P + TP SY A T P P Sbjct: 121 AQDVTLICPKPDHILTPESYLAPPTTPQP 149
>RPOC_BACLD (Q65PB4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = -1 Query: 489 LHSRVDGGGSVLVALYENGVVTDCGRGENKGKSLLNDHVVRRLEKVAAVRDGASARKAVS 310 L RVD G ++ + N + CG + L V++ L + + SA++ + Sbjct: 332 LGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVEKGLAHNIKSAKRKIE 391 Query: 309 GSVQFPLWDDFRAT-KCGLVLFVQNSALQVLGVQHFD 202 VQ +WD + K VL + L LG+Q F+ Sbjct: 392 -RVQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFE 427
>STE12_KLULA (Q08400) Protein STE12| Length = 666 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 148 PAHSASSCEPLESDVV-GQVEVLDAEHLQRRVLHEEDEAALGRAKVVPQRELD 303 P ++ EP ES+VV +V+++D + + H E + + +VPQ +L+ Sbjct: 235 PVSASKDVEPFESNVVEDEVQIVDNNKMCYGLPHSESNNYVPQQLIVPQSDLE 287
>ISPG_SILPO (Q5LQ99) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 375 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = -1 Query: 438 NGVVTDCGRGENK-GKSLLNDHVVRRLEKVAAVRDGASARKA 316 +G+V G+ +K + DH+V +EK AA D ASA +A Sbjct: 332 SGMVYLAGKASHKMSNERMIDHIVEEVEKKAAALDAASAAEA 373 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.132 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,065,247 Number of Sequences: 219361 Number of extensions: 1233190 Number of successful extensions: 4835 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4580 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4829 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
