Clone Name | rbart12f02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478701.1| Oryza sativa (japonica cultivar-group), mRNA Length = 822 Score = 345 bits (174), Expect = 8e-92 Identities = 264/294 (89%) Strand = Plus / Minus Query: 188 acgttgtcgggcaggtcgaagtgctggacgccgagcacctgcagcgccgagttctgcacg 247 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| Sbjct: 818 acgttgtcgggcaggtcgaagtgctggacgccgagcacctgcagcgcggcgttctggacg 759 Query: 248 aagaggacgaggccgcacttggtcgcgcgaaagtcgtcccacagcgggaactggacggac 307 ||||||||||||||||| || ||||| ||| ||||||| ||||||||||| |||||| Sbjct: 758 aagaggacgaggccgcagcgggaggcgcggaagccgtcccagagcgggaactgcacggac 699 Query: 308 ccggacacggccttcctggcggacgcaccgtcgcgcacggcggccaccttctccagccgg 367 |||||||||| |||| | || ||||| |||||||||||||||||||||||||||||||| Sbjct: 698 ccggacacggacttcttcgccgacgcgccgtcgcgcacggcggccaccttctccagccgc 639 Query: 368 cgcacgacgtggtcgttgagcagcgacttgcccttgttctcgccgcggccgcagtcggtg 427 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct: 638 cgcaccacgtggtcgttgagcagcgacttccccttgttctcgccgcgcccgcagtccgtc 579 Query: 428 accacgccgttctcgtacagcgccacaagcacgctcccgccgccgtccacccgg 481 |||| ||| |||||||||||||||| | ||||||||||||||| |||| |||| Sbjct: 578 accagcccgctctcgtacagcgccaccaacacgctcccgccgccctccatccgg 525
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 345 bits (174), Expect = 8e-92 Identities = 264/294 (89%) Strand = Plus / Plus Query: 188 acgttgtcgggcaggtcgaagtgctggacgccgagcacctgcagcgccgagttctgcacg 247 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| Sbjct: 22293096 acgttgtcgggcaggtcgaagtgctggacgccgagcacctgcagcgcggcgttctggacg 22293155 Query: 248 aagaggacgaggccgcacttggtcgcgcgaaagtcgtcccacagcgggaactggacggac 307 ||||||||||||||||| || ||||| ||| ||||||| ||||||||||| |||||| Sbjct: 22293156 aagaggacgaggccgcagcgggaggcgcggaagccgtcccagagcgggaactgcacggac 22293215 Query: 308 ccggacacggccttcctggcggacgcaccgtcgcgcacggcggccaccttctccagccgg 367 |||||||||| |||| | || ||||| |||||||||||||||||||||||||||||||| Sbjct: 22293216 ccggacacggacttcttcgccgacgcgccgtcgcgcacggcggccaccttctccagccgc 22293275 Query: 368 cgcacgacgtggtcgttgagcagcgacttgcccttgttctcgccgcggccgcagtcggtg 427 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct: 22293276 cgcaccacgtggtcgttgagcagcgacttccccttgttctcgccgcgcccgcagtccgtc 22293335 Query: 428 accacgccgttctcgtacagcgccacaagcacgctcccgccgccgtccacccgg 481 |||| ||| |||||||||||||||| | ||||||||||||||| |||| |||| Sbjct: 22293336 accagcccgctctcgtacagcgccaccaacacgctcccgccgccctccatccgg 22293389
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 345 bits (174), Expect = 8e-92 Identities = 264/294 (89%) Strand = Plus / Plus Query: 188 acgttgtcgggcaggtcgaagtgctggacgccgagcacctgcagcgccgagttctgcacg 247 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| Sbjct: 98342 acgttgtcgggcaggtcgaagtgctggacgccgagcacctgcagcgcggcgttctggacg 98401 Query: 248 aagaggacgaggccgcacttggtcgcgcgaaagtcgtcccacagcgggaactggacggac 307 ||||||||||||||||| || ||||| ||| ||||||| ||||||||||| |||||| Sbjct: 98402 aagaggacgaggccgcagcgggaggcgcggaagccgtcccagagcgggaactgcacggac 98461 Query: 308 ccggacacggccttcctggcggacgcaccgtcgcgcacggcggccaccttctccagccgg 367 |||||||||| |||| | || ||||| |||||||||||||||||||||||||||||||| Sbjct: 98462 ccggacacggacttcttcgccgacgcgccgtcgcgcacggcggccaccttctccagccgc 98521 Query: 368 cgcacgacgtggtcgttgagcagcgacttgcccttgttctcgccgcggccgcagtcggtg 427 ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct: 98522 cgcaccacgtggtcgttgagcagcgacttccccttgttctcgccgcgcccgcagtccgtc 98581 Query: 428 accacgccgttctcgtacagcgccacaagcacgctcccgccgccgtccacccgg 481 |||| ||| |||||||||||||||| | ||||||||||||||| |||| |||| Sbjct: 98582 accagcccgctctcgtacagcgccaccaacacgctcccgccgccctccatccgg 98635
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 415 gccgcagtcggtgaccacgccgttct 440 ||||||||||| |||||||||||||| Sbjct: 674422 gccgcagtcggagaccacgccgttct 674447
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 acctgcagcgccgagttctgc 244 ||||||||||||||||||||| Sbjct: 7013165 acctgcagcgccgagttctgc 7013185
>ref|XM_522308.1| PREDICTED: Pan troglodytes similar to Sodium- and chloride-dependent betaine transporter (Na+/Cl-betaine/GABA transporter) (BGT-1) (LOC466908), mRNA Length = 2310 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 343 cacggcggccaccttctccagccggcgc 370 ||||||||||| |||||||| ||||||| Sbjct: 723 cacggcggccagcttctccacccggcgc 750
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 acatgccaatcacactctat 104 |||||||||||||||||||| Sbjct: 2125394 acatgccaatcacactctat 2125375
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 acgccgttctcgtacagcgc 450 |||||||||||||||||||| Sbjct: 3182291 acgccgttctcgtacagcgc 3182310
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gacgttgtcgggcaggtcga 206 |||||||||||||||||||| Sbjct: 1973953 gacgttgtcgggcaggtcga 1973934
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cggacgcaccgtcgcgcacg 346 |||||||||||||||||||| Sbjct: 2537866 cggacgcaccgtcgcgcacg 2537885
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 acgccgttctcgtacagcgc 450 |||||||||||||||||||| Sbjct: 1618545 acgccgttctcgtacagcgc 1618526
>gb|AY487172.1| Armigeres subalbatus prophenoloxidase IV mRNA, complete cds Length = 2246 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gttgtcgggcaggtcgaagt 209 |||||||||||||||||||| Sbjct: 132 gttgtcgggcaggtcgaagt 113
>gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, complete sequence Length = 174522 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ataaagaatagttgtacatg 122 |||||||||||||||||||| Sbjct: 55898 ataaagaatagttgtacatg 55879
>emb|AJ133131.3|MXA133131 Myxococcus xanthus phoR1 gene, pph2 gene and sixA gene Length = 5508 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 caccttctccagccggcgca 371 |||||||||||||||||||| Sbjct: 1619 caccttctccagccggcgca 1600
>gb|CP000321.1| Nitrobacter hamburgensis X14 plasmid 2, complete sequence Length = 188318 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 accgtcgcgcacggcggcca 353 |||||||||||||||||||| Sbjct: 23966 accgtcgcgcacggcggcca 23985
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gccgagcacctgcagcgccg 236 |||||||||||||||||||| Sbjct: 2129873 gccgagcacctgcagcgccg 2129892
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 431 acgccgttctcgtacagcgc 450 |||||||||||||||||||| Sbjct: 1505672 acgccgttctcgtacagcgc 1505653
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 tgctggacgccgagcacctgcagc 232 ||||| |||||||||||||||||| Sbjct: 892517 tgctgtacgccgagcacctgcagc 892494
>dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, complete sequence Length = 158476 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ataaagaatagttgtacatg 122 |||||||||||||||||||| Sbjct: 90012 ataaagaatagttgtacatg 90031
>dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, complete sequence Length = 188847 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ataaagaatagttgtacatg 122 |||||||||||||||||||| Sbjct: 188036 ataaagaatagttgtacatg 188055
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 tgctggacgccgagcacctgcagc 232 |||||| ||||||||||||||||| Sbjct: 904840 tgctggccgccgagcacctgcagc 904817
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ataaagaatagttgtacatg 122 |||||||||||||||||||| Sbjct: 16881986 ataaagaatagttgtacatg 16881967
>gb|DQ351525.1| Agrobacterium tumefaciens molybdate transporter permease (modB) gene, partial cds Length = 320 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cgttgagcagcgacttgccc 400 |||||||||||||||||||| Sbjct: 160 cgttgagcagcgacttgccc 141
>gb|AC007043.3|AC007043 Homo sapiens BAC clone RP11-507E21 from Y, complete sequence Length = 107402 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ataaagaatagttgtacatg 122 |||||||||||||||||||| Sbjct: 82100 ataaagaatagttgtacatg 82119
>gb|AE004539.1| Pseudomonas aeruginosa PAO1, section 100 of 529 of the complete genome Length = 25022 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 gtcggtgaccacgccgttct 440 |||||||||||||||||||| Sbjct: 8416 gtcggtgaccacgccgttct 8397
>gb|DQ230532.1| Streptomyces sp. Tu6071 phenalinolactone biosynthetic gene cluster, complete sequence Length = 49461 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ccgtcgcgcacggcggccac 354 |||||||||||||||||||| Sbjct: 3919 ccgtcgcgcacggcggccac 3938
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 cgctcccgccgccgtccacc 478 |||||||||||||||||||| Sbjct: 1660593 cgctcccgccgccgtccacc 1660612
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 cgcaccgtcgcgcacggcgg 350 |||||||||||||||||||| Sbjct: 5490358 cgcaccgtcgcgcacggcgg 5490377
>ref|XM_310196.2| Anopheles gambiae str. PEST ENSANGP00000010943 (ENSANGG00000008454), partial mRNA Length = 771 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 accttctccagccggcgcac 372 |||||||||||||||||||| Sbjct: 335 accttctccagccggcgcac 316
>ref|XM_307516.2| Anopheles gambiae str. PEST ENSANGP00000015389 (ENSANGG00000012900), partial mRNA Length = 2228 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 gaactggacggacccggacacggc 318 |||||||||| ||||||||||||| Sbjct: 1062 gaactggacgaacccggacacggc 1039
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 acgccgttctcgtacagcgc 450 |||||||||||||||||||| Sbjct: 3259878 acgccgttctcgtacagcgc 3259897
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cgtcgcgcacggcggccacc 355 |||||||||||||||||||| Sbjct: 229346 cgtcgcgcacggcggccacc 229365
>gb|AC132410.4| Mus musculus BAC clone RP23-348E10 from 8, complete sequence Length = 175530 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gataatttcatacttacaca 76 |||||||||||||||||||| Sbjct: 100472 gataatttcatacttacaca 100491
>dbj|AP006634.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT15O18, TM0086, complete sequence Length = 133572 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 acgaagaggacgaggccgca 264 |||||||||||||||||||| Sbjct: 111037 acgaagaggacgaggccgca 111056
>gb|U62866.1|VCU62866 Volvox carteri f. nagariensis GDP dissociation inhibitor protein GDIV1p (gdiV1) mRNA, complete cds Length = 2529 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ccacgccgttctcgtacagc 448 |||||||||||||||||||| Sbjct: 872 ccacgccgttctcgtacagc 853 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,888,939 Number of Sequences: 3902068 Number of extensions: 2888939 Number of successful extensions: 60661 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59441 Number of HSP's gapped (non-prelim): 1217 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)