ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 52 7e-07
2GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 38 0.010
3TLL_DROVI (O16845) Protein tailless 34 0.15
4TLL_DROME (P18102) Protein tailless 31 1.6
5GSTT2_HUMAN (P30712) Glutathione S-transferase theta-2 (EC 2.5.1... 29 6.2
6PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B me... 29 6.2
7INHB_DROME (O61643) Inhibin beta chain precursor (Activin beta c... 29 6.2
8SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote... 28 8.1
9GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (E... 28 8.1
10SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro... 28 8.1
11ENV_HV2CA (P24105) Envelope polyprotein GP160 precursor [Contain... 28 8.1

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = -2

Query: 449 KTXEERARAAGEVVSVLE----AXXXXXXXXXXXXXXXXXXXXXXXXXXXGWLRASEAMC 282
           KT EERA A  + V+ LE    A                           GW  A + + 
Sbjct: 124 KTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLI 183

Query: 281 GVRTLDPARTPRLAAWAGRFGALDGVREIVPDAA 180
           G R +DPARTP LAAW  RF A D  + +VPD A
Sbjct: 184 GRRLIDPARTPALAAWEERFRATDAAKGVVPDDA 217



to top

>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 305 LRASEAMCGVRTLDPARTPRLAAWAGRFGALDGVREIVPDAAPLVEY 165
           LRA E + G+  +D + TP L  W+ RF A    + ++PD   +V++
Sbjct: 175 LRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221



to top

>TLL_DROVI (O16845) Protein tailless|
          Length = 450

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +1

Query: 169 STSGAASGTISLTPSSAPNRPAHAASRGVLAGSRVRTPHMASDARN 306
           ST   A+ +I LT S +PN  A A SRG+L  S+V   H  +DARN
Sbjct: 346 STEDLANSSI-LTGSGSPNSSASAESRGLLESSKVAAMH--NDARN 388



to top

>TLL_DROME (P18102) Protein tailless|
          Length = 452

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 169 STSGAASGTISLTPSSAPNRPAHAASRGVLAGSRVRTPHMASDARN 306
           ST   A+ +I LT S +PN  A A SRG+L   +V   H  +DAR+
Sbjct: 348 STEDLANSSI-LTGSGSPNSSASAESRGLLESGKVAAMH--NDARS 390



to top

>GSTT2_HUMAN (P30712) Glutathione S-transferase theta-2 (EC 2.5.1.18) (GST|
           class-theta-2)
          Length = 243

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 251 PRLAAWAGRFGALDGVREIVPDAAPLVEYNLMKRARRGLPYLPPHQTQ 108
           PRLAAW GR  A  G  E+  +A  ++   L + A++ LP   P   Q
Sbjct: 187 PRLAAWRGRVEAFLGA-ELCQEAHSIILSILEQAAKKTLPTPSPEAYQ 233



to top

>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1371

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = -2

Query: 296 SEAMCGVRTLDPARTPRLAAWAGRFGALDGVREIVPDAAPLVEYNLMKRARRGLP 132
           S+ +   RTL P  +PRL    GR G LD +RE+ P     +  +L +RA   LP
Sbjct: 431 SDGLAATRTLQPPESPRL----GRRG-LDSMRELPP-----LSPSLSRRALSPLP 475



to top

>INHB_DROME (O61643) Inhibin beta chain precursor (Activin beta chain)|
          Length = 946

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 88  ELKLAIYCVWCGGRYGRPRRARFMRLYSTSGAASGTISLTPSSAPNRP 231
           +L+L I C  CGGRY        + L+ TS    G  S   S+ PNRP
Sbjct: 777 KLRLLIDCTGCGGRYS-------LHLFQTS-KLRGNSSDYLSTNPNRP 816



to top

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 276  HAAHGLGRAQPPDEPAEHHVHQPH 347
            H  H      PP +P  HH H PH
Sbjct: 1007 HPPHHHHHHAPPPQPHHHHAHPPH 1030



to top

>GSTU1_ORYSA (O65032) Probable glutathione S-transferase GSTU1 (EC 2.5.1.18)|
          Length = 231

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 251 PRLAAWAGRFGALDGVREIVPDAAPLVEY 165
           PRLAAWA R G +D V + +P    + ++
Sbjct: 192 PRLAAWARRCGRIDSVVKHLPSPEKVYDF 220



to top

>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 276  HAAHGLGRAQPPDEPAEHHVHQPH 347
            H  H      PP +P  HH H PH
Sbjct: 999  HPPHHHHHHAPPPQPHHHHAHPPH 1022



to top

>ENV_HV2CA (P24105) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 859

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 130 YGRPRRARF----MRLYSTSGAASGTISLTPSSAPNRPAHAASRGVLAG 264
           +GRP+R  F    +   +T+G A GT SLT S        A SR +LAG
Sbjct: 507 HGRPKRGAFVLGFLGFLTTAGVAMGTASLTLS--------AQSRTLLAG 547


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,880,978
Number of Sequences: 219361
Number of extensions: 610224
Number of successful extensions: 2482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2482
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top