Clone Information

BLAST Search Result

Clone Name	rbart12e10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_475281.1\| Oryza sativa (japonica cultivar-group), predic...	287	2e-74
2	dbj\|AK099260.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	287	2e-74
3	dbj\|AK072299.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	287	2e-74
4	dbj\|AK058468.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	280	4e-72
5	gb\|AC108502.3\| Oryza sativa (japonica cultivar-group) chromosome...	182	8e-43
6	gb\|AC105769.2\| Oryza sativa (japonica cultivar-group) chromosome...	182	8e-43
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	182	8e-43
8	gb\|AY111110.1\| Zea mays CL24065_1 mRNA sequence	145	2e-31
9	dbj\|AP006730.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	54	5e-04
10	dbj\|AP006078.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	48	0.030
11	gb\|AC154811.2\| Mus musculus BAC clone RP24-531D17 from chromosom...	44	0.46
12	gb\|AC153911.5\| Mus musculus 10 BAC RP23-182J19 (Roswell Park Can...	44	0.46
13	gb\|AC153021.2\| Mus musculus 10 BAC RP23-37G3 (Roswell Park Cance...	44	0.46
14	emb\|AL590369.18\| Human DNA sequence from clone RP11-483H20 on ch...	42	1.8
15	emb\|AL589847.6\| Human DNA sequence from clone RP13-477D10 on chr...	42	1.8
16	gb\|AF363646.1\| Bensingtonia sakaguchii 26S ribosomal RNA gene, p...	42	1.8
17	gb\|AC111115.13\| Mus musculus chromosome 5, clone RP23-213H20, co...	40	7.2
18	gb\|AC152065.4\| Mus musculus BAC clone RP23-16D9 from chromosome ...	40	7.2
19	ref\|XM_872250.1\| PREDICTED: Bos taurus similar to C1q domain con...	40	7.2
20	ref\|XM_616309.2\| PREDICTED: Bos taurus similar to C1q domain con...	40	7.2
21	ref\|XM_871954.1\| PREDICTED: Bos taurus similar to C1q domain con...	40	7.2
22	ref\|XM_871851.1\| PREDICTED: Bos taurus similar to C1q domain con...	40	7.2
23	ref\|XM_871760.1\| PREDICTED: Bos taurus similar to C1q domain con...	40	7.2
24	ref\|XM_871655.1\| PREDICTED: Bos taurus similar to C1q domain con...	40	7.2
25	ref\|XM_871570.1\| PREDICTED: Bos taurus similar to C1q domain con...	40	7.2
26	gb\|AC160931.2\| Mus musculus BAC clone RP24-311F12 from chromosom...	40	7.2
27	gb\|AC136628.2\| Homo sapiens chromosome 5 clone RP11-798K23, comp...	40	7.2
28	gb\|DQ334078.1\| Drosophila miranda CG12109 gene, partial cds	40	7.2
29	emb\|AL389915.19\| Human DNA sequence from clone RP11-438P9 on chr...	40	7.2
30	emb\|AL390738.4\| Human DNA sequence from clone RP11-438F9 on chro...	40	7.2
31	emb\|Z99108.2\|BSUB0005 Bacillus subtilis complete genome (section...	40	7.2
32	emb\|X96983.1\|BS75DGREG B.subtilis chromosomal DNA (region 75 deg...	40	7.2
33	ref\|XM_695967.1\| PREDICTED: Danio rerio similar to RW1 protein (...	40	7.2
34	ref\|XM_681944.1\| PREDICTED: Danio rerio similar to RW1 protein (...	40	7.2
35	ref\|XM_680831.1\| PREDICTED: Danio rerio similar to RW1 protein (...	40	7.2
36	dbj\|AK045552.1\| Mus musculus adult male corpora quadrigemina cDN...	40	7.2
37	gb\|AC158658.4\| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cance...	40	7.2
38	emb\|BX548026.10\| Zebrafish DNA sequence from clone CH211-193D9, ...	40	7.2
39	gb\|AC073465.5\| Homo sapiens BAC clone RP11-158L8 from 2, complet...	40	7.2
40	gb\|AC000103.2\|AC000103 Genomic sequence for Arabidopsis thaliana...	40	7.2
41	gb\|AC113425.2\| Homo sapiens chromosome 5 clone RP11-626B22, comp...	40	7.2
42	dbj\|BA000004.3\| Bacillus halodurans C-125 DNA, complete genome	40	7.2
43	emb\|AL954299.13\| Mouse DNA sequence from clone RP23-399D3 on chr...	40	7.2
44	emb\|AL731729.10\| Mouse DNA sequence from clone RP23-92L12 on chr...	40	7.2
45	gb\|AC121315.14\| Mus musculus chromosome 3, clone RP24-488I7, com...	40	7.2
46	gb\|BC103478.1\| Rattus norvegicus similar to RIKEN cDNA 2210010N0...	40	7.2
47	ref\|NM_001037191.1\| Rattus norvegicus similar to RIKEN cDNA 2210...	40	7.2
48	gb\|AC132305.3\| Mus musculus BAC clone RP24-286A19 from 6, comple...	40	7.2
49	gb\|AC133158.2\| Mus musculus BAC clone RP24-491F15 from 8, comple...	40	7.2
50	gb\|AC142262.3\| Mus musculus BAC clone RP24-486I4 from 8, complet...	40	7.2
51	emb\|AL928701.7\| Zebrafish DNA sequence from clone CH211-201H21, ...	40	7.2
52	emb\|AL808141.8\| Zebrafish DNA sequence from clone CH211-260N19, ...	40	7.2

>ref|XM_475281.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1473

 Score =  287 bits (145), Expect = 2e-74
 Identities = 280/325 (86%)
 Strand = Plus / Minus

                                                                        
Query: 204  gcattttaactttgggcgcccccttcttcatctgccgattccgttctttctcctctttct 263
            |||||||||||||||||     |||||||||||| |||  || |||||| ||||||||||
Sbjct: 1462 gcattttaactttgggcatggacttcttcatctgacgagccctttctttttcctctttct 1403

                                                                        
Query: 264  tccggagtacctcggcgctcagtttggcctctgcctcttccataagctttttcttttcag 323
            | |||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 1402 tgcggagtgcctcggcgctcaatttggcctctgcctcttccataagttttttcttctcag 1343

                                                                        
Query: 324  cctttttcctcagcagggtttcctgcctcacaccctgaagctccctgaaagcctcctggg 383
            |||| |||||  | |||| ||||||||| | ||||||  |||||||||||||||||||||
Sbjct: 1342 ccttcttcctttgaagggcttcctgccttagaccctgttgctccctgaaagcctcctggg 1283

                                                                        
Query: 384  cagcctttgtcctagcagcatcagttttcgagcgtgcatgtgagctcagcttgtaacgtc 443
             ||| ||||| || ||||| |||||||| || || |||||   ||| ||||||||||| |
Sbjct: 1282 aagcttttgttcttgcagcttcagttttggaacgagcatggttgctgagcttgtaacgcc 1223

                                                                        
Query: 444  caaccaaatcaatgtagaatggcacaagagccactaattttgtcatatcagccatgttgt 503
            | ||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||||||| 
Sbjct: 1222 ccaccaaatcaatgtagtatggcacgagagcaactaatcttgtcatctcagccatgttgc 1163

                                     
Query: 504  ttgcatctggcagcacaaacttgaa 528
            ||||||||||||| |||||||||||
Sbjct: 1162 ttgcatctggcagtacaaacttgaa 1138

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>dbj|AK099260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004C23, full
            insert sequence
          Length = 1743

 Score =  287 bits (145), Expect = 2e-74
 Identities = 280/325 (86%)
 Strand = Plus / Minus

                                                                        
Query: 204  gcattttaactttgggcgcccccttcttcatctgccgattccgttctttctcctctttct 263
            |||||||||||||||||     |||||||||||| |||  || |||||| ||||||||||
Sbjct: 1572 gcattttaactttgggcatggacttcttcatctgacgagccctttctttttcctctttct 1513

                                                                        
Query: 264  tccggagtacctcggcgctcagtttggcctctgcctcttccataagctttttcttttcag 323
            | |||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 1512 tgcggagtgcctcggcgctcaatttggcctctgcctcttccataagttttttcttctcag 1453

                                                                        
Query: 324  cctttttcctcagcagggtttcctgcctcacaccctgaagctccctgaaagcctcctggg 383
            |||| |||||  | |||| ||||||||| | ||||||  |||||||||||||||||||||
Sbjct: 1452 ccttcttcctttgaagggcttcctgccttagaccctgttgctccctgaaagcctcctggg 1393

                                                                        
Query: 384  cagcctttgtcctagcagcatcagttttcgagcgtgcatgtgagctcagcttgtaacgtc 443
             ||| ||||| || ||||| |||||||| || || |||||   ||| ||||||||||| |
Sbjct: 1392 aagcttttgttcttgcagcttcagttttggaacgagcatggttgctgagcttgtaacgcc 1333

                                                                        
Query: 444  caaccaaatcaatgtagaatggcacaagagccactaattttgtcatatcagccatgttgt 503
            | ||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||||||| 
Sbjct: 1332 ccaccaaatcaatgtagtatggcacgagagcaactaatcttgtcatctcagccatgttgc 1273

                                     
Query: 504  ttgcatctggcagcacaaacttgaa 528
            ||||||||||||| |||||||||||
Sbjct: 1272 ttgcatctggcagtacaaacttgaa 1248

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>dbj|AK072299.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011H02, full
            insert sequence
          Length = 1918

 Score =  287 bits (145), Expect = 2e-74
 Identities = 280/325 (86%)
 Strand = Plus / Minus

                                                                        
Query: 204  gcattttaactttgggcgcccccttcttcatctgccgattccgttctttctcctctttct 263
            |||||||||||||||||     |||||||||||| |||  || |||||| ||||||||||
Sbjct: 1505 gcattttaactttgggcatggacttcttcatctgacgagccctttctttttcctctttct 1446

                                                                        
Query: 264  tccggagtacctcggcgctcagtttggcctctgcctcttccataagctttttcttttcag 323
            | |||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 1445 tgcggagtgcctcggcgctcaatttggcctctgcctcttccataagttttttcttctcag 1386

                                                                        
Query: 324  cctttttcctcagcagggtttcctgcctcacaccctgaagctccctgaaagcctcctggg 383
            |||| |||||  | |||| ||||||||| | ||||||  |||||||||||||||||||||
Sbjct: 1385 ccttcttcctttgaagggcttcctgccttagaccctgttgctccctgaaagcctcctggg 1326

                                                                        
Query: 384  cagcctttgtcctagcagcatcagttttcgagcgtgcatgtgagctcagcttgtaacgtc 443
             ||| ||||| || ||||| |||||||| || || |||||   ||| ||||||||||| |
Sbjct: 1325 aagcttttgttcttgcagcttcagttttggaacgagcatggttgctgagcttgtaacgcc 1266

                                                                        
Query: 444  caaccaaatcaatgtagaatggcacaagagccactaattttgtcatatcagccatgttgt 503
            | ||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||||||| 
Sbjct: 1265 ccaccaaatcaatgtagtatggcacgagagcaactaatcttgtcatctcagccatgttgc 1206

                                     
Query: 504  ttgcatctggcagcacaaacttgaa 528
            ||||||||||||| |||||||||||
Sbjct: 1205 ttgcatctggcagtacaaacttgaa 1181

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>dbj|AK058468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B07, full
            insert sequence
          Length = 1763

 Score =  280 bits (141), Expect = 4e-72
 Identities = 279/325 (85%)
 Strand = Plus / Minus

                                                                        
Query: 204  gcattttaactttgggcgcccccttcttcatctgccgattccgttctttctcctctttct 263
            |||||||||||||||||     |||||||||||| |||  || |||||| ||||||||||
Sbjct: 1511 gcattttaactttgggcatggacttcttcatctgacgagccctttctttttcctctttct 1452

                                                                        
Query: 264  tccggagtacctcggcgctcagtttggcctctgcctcttccataagctttttcttttcag 323
            | |||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 1451 tgcggagtgcctcggcgctcaatttggcctctgcctcttccataagttttttcttctcag 1392

                                                                        
Query: 324  cctttttcctcagcagggtttcctgcctcacaccctgaagctccctgaaagcctcctggg 383
            || | |||||  | |||| ||||||||| | ||||||  |||||||||||||||||||||
Sbjct: 1391 ccctcttcctttgaagggcttcctgccttagaccctgttgctccctgaaagcctcctggg 1332

                                                                        
Query: 384  cagcctttgtcctagcagcatcagttttcgagcgtgcatgtgagctcagcttgtaacgtc 443
             ||| ||||| || ||||| |||||||| || || |||||   ||| ||||||||||| |
Sbjct: 1331 aagcttttgttcttgcagcttcagttttggaacgagcatggttgctgagcttgtaacgcc 1272

                                                                        
Query: 444  caaccaaatcaatgtagaatggcacaagagccactaattttgtcatatcagccatgttgt 503
            | ||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||||||| 
Sbjct: 1271 ccaccaaatcaatgtagtatggcacgagagcaactaatcttgtcatctcagccatgttgc 1212

                                     
Query: 504  ttgcatctggcagcacaaacttgaa 528
            ||||||||||||| |||||||||||
Sbjct: 1211 ttgcatctggcagtacaaacttgaa 1187

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>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04,
             complete sequence
          Length = 103458

 Score =  182 bits (92), Expect = 8e-43
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                         
Query: 204   gcattttaactttgggcgcccccttcttcatctgccgattccgttctttctcctctttct 263
             |||||||||||||||||     |||||||||||| |||  || |||||| ||||||||||
Sbjct: 75605 gcattttaactttgggcatggacttcttcatctgacgagccctttctttttcctctttct 75546

                                                                         
Query: 264   tccggagtacctcggcgctcagtttggcctctgcctcttccataagctttttcttttcag 323
             | |||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 75545 tgcggagtgcctcggcgctcaatttggcctctgcctcttccataagttttttcttctcag 75486

                                                                         
Query: 324   cctttttcctcagcagggtttcctgcctcacaccctgaagctccctgaaagcctcctggg 383
             |||| |||||  | |||| ||||||||| | ||||||  |||||||||||||||||||||
Sbjct: 75485 ccttcttcctttgaagggcttcctgccttagaccctgttgctccctgaaagcctcctggg 75426

                                         
Query: 384   cagcctttgtcctagcagcatcagtttt 411
              ||| ||||| || ||||| ||||||||
Sbjct: 75425 aagcttttgttcttgcagcttcagtttt 75398



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                         
Query: 431   agcttgtaacgtccaaccaaatcaatgtagaatggcacaagagccactaattttgtcata 490
             ||||||||||| || ||||||||||||||| ||||||| ||||| |||||| ||||||| 
Sbjct: 75294 agcttgtaacgccccaccaaatcaatgtagtatggcacgagagcaactaatcttgtcatc 75235

                                                   
Query: 491   tcagccatgttgtttgcatctggcagcacaaacttgaa 528
             |||||||||||| ||||||||||||| |||||||||||
Sbjct: 75234 tcagccatgttgcttgcatctggcagtacaaacttgaa 75197

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>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
             complete sequence
          Length = 106166

 Score =  182 bits (92), Expect = 8e-43
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                         
Query: 204   gcattttaactttgggcgcccccttcttcatctgccgattccgttctttctcctctttct 263
             |||||||||||||||||     |||||||||||| |||  || |||||| ||||||||||
Sbjct: 39092 gcattttaactttgggcatggacttcttcatctgacgagccctttctttttcctctttct 39033

                                                                         
Query: 264   tccggagtacctcggcgctcagtttggcctctgcctcttccataagctttttcttttcag 323
             | |||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 39032 tgcggagtgcctcggcgctcaatttggcctctgcctcttccataagttttttcttctcag 38973

                                                                         
Query: 324   cctttttcctcagcagggtttcctgcctcacaccctgaagctccctgaaagcctcctggg 383
             |||| |||||  | |||| ||||||||| | ||||||  |||||||||||||||||||||
Sbjct: 38972 ccttcttcctttgaagggcttcctgccttagaccctgttgctccctgaaagcctcctggg 38913

                                         
Query: 384   cagcctttgtcctagcagcatcagtttt 411
              ||| ||||| || ||||| ||||||||
Sbjct: 38912 aagcttttgttcttgcagcttcagtttt 38885



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                         
Query: 431   agcttgtaacgtccaaccaaatcaatgtagaatggcacaagagccactaattttgtcata 490
             ||||||||||| || ||||||||||||||| ||||||| ||||| |||||| ||||||| 
Sbjct: 38781 agcttgtaacgccccaccaaatcaatgtagtatggcacgagagcaactaatcttgtcatc 38722

                                                   
Query: 491   tcagccatgttgtttgcatctggcagcacaaacttgaa 528
             |||||||||||| ||||||||||||| |||||||||||
Sbjct: 38721 tcagccatgttgcttgcatctggcagtacaaacttgaa 38684

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  182 bits (92), Expect = 8e-43
 Identities = 179/208 (86%)
 Strand = Plus / Minus

                                                                            
Query: 204      gcattttaactttgggcgcccccttcttcatctgccgattccgttctttctcctctttct 263
                |||||||||||||||||     |||||||||||| |||  || |||||| ||||||||||
Sbjct: 21060227 gcattttaactttgggcatggacttcttcatctgacgagccctttctttttcctctttct 21060168

                                                                            
Query: 264      tccggagtacctcggcgctcagtttggcctctgcctcttccataagctttttcttttcag 323
                | |||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct: 21060167 tgcggagtgcctcggcgctcaatttggcctctgcctcttccataagttttttcttctcag 21060108

                                                                            
Query: 324      cctttttcctcagcagggtttcctgcctcacaccctgaagctccctgaaagcctcctggg 383
                |||| |||||  | |||| ||||||||| | ||||||  |||||||||||||||||||||
Sbjct: 21060107 ccttcttcctttgaagggcttcctgccttagaccctgttgctccctgaaagcctcctggg 21060048

                                            
Query: 384      cagcctttgtcctagcagcatcagtttt 411
                 ||| ||||| || ||||| ||||||||
Sbjct: 21060047 aagcttttgttcttgcagcttcagtttt 21060020



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                            
Query: 431      agcttgtaacgtccaaccaaatcaatgtagaatggcacaagagccactaattttgtcata 490
                ||||||||||| || ||||||||||||||| ||||||| ||||| |||||| ||||||| 
Sbjct: 21059916 agcttgtaacgccccaccaaatcaatgtagtatggcacgagagcaactaatcttgtcatc 21059857

                                                      
Query: 491      tcagccatgttgtttgcatctggcagcacaaacttgaa 528
                |||||||||||| ||||||||||||| |||||||||||
Sbjct: 21059856 tcagccatgttgcttgcatctggcagtacaaacttgaa 21059819

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>gb|AY111110.1| Zea mays CL24065_1 mRNA sequence
          Length = 765

 Score =  145 bits (73), Expect = 2e-31
 Identities = 157/185 (84%)
 Strand = Plus / Plus

                                                                       
Query: 344 tcctgcctcacaccctgaagctccctgaaagcctcctgggcagcctttgtcctagcagca 403
           ||||||||  ||| ||| || ||||| ||||||||||| |||||||| || |||||  ||
Sbjct: 457 tcctgcctggcactctgtagttccctaaaagcctcctgagcagccttcgttctagctcca 516

                                                                       
Query: 404 tcagttttcgagcgtgcatgtgagctcagcttgtaacgtccaaccaaatcaatgtagaat 463
           |||||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||||| ||
Sbjct: 517 tcagttttagagcgagcatgagagctgagcttataacgcccaaccaaatcaatgtagtat 576

                                                                       
Query: 464 ggcacaagagccactaattttgtcatatcagccatgttgtttgcatctggcagcacaaac 523
           ||||||||||  || ||| ||||||| || | ||||||| ||||||||||||  ||||||
Sbjct: 577 ggcacaagagaaaccaatcttgtcatctctgacatgttgcttgcatctggcaatacaaac 636

                
Query: 524 ttgaa 528
           |||||
Sbjct: 637 ttgaa 641

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>dbj|AP006730.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT45B09, TM0885b,
             complete sequence
          Length = 44466

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 485   gtcatatcagccatgttgtttgcatctggcagcacaaacttgaacga 531
             ||||||||||||||||  || ||| |||| |||||||||||||||||
Sbjct: 41803 gtcatatcagccatgtccttagcagctggaagcacaaacttgaacga 41757

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>dbj|AP006078.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT48M22, TM0118a,
             complete sequence
          Length = 30370

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 485   gtcatatcagccatgttgtttgcatctggcagcacaaacttgaa 528
             ||||||||||||||||  || ||| |||| ||||||||||||||
Sbjct: 17365 gtcatatcagccatgtccttagcagctggaagcacaaacttgaa 17322

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>gb|AC154811.2| Mus musculus BAC clone RP24-531D17 from chromosome 14, complete sequence
          Length = 167122

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 241    attccgttctttctcctctttc 262
              ||||||||||||||||||||||
Sbjct: 120513 attccgttctttctcctctttc 120492

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>gb|AC153911.5| Mus musculus 10 BAC RP23-182J19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 219859

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 103   cataaaagagtctagacgatgctgaa 128
             |||||||||||||||| |||||||||
Sbjct: 17646 cataaaagagtctagatgatgctgaa 17671

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>gb|AC153021.2| Mus musculus 10 BAC RP23-37G3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187132

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 103   cataaaagagtctagacgatgctgaa 128
             |||||||||||||||| |||||||||
Sbjct: 94936 cataaaagagtctagatgatgctgaa 94911

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>emb|AL590369.18| Human DNA sequence from clone RP11-483H20 on chromosome 9 Contains the 5'
              end of a novel gene (FLJ35803), the 3' end of the gene for
              AD-003 protein (AD-003), the ASB6 gene for ankyrin repeat
              and SOCS box-containing 6 (FLJ20548), two novel genes, the
              gene for paired related homeobox protein (PRX2) (PMX2,
              PRRX2), the 3' end of the PTGES gene for prostaglandin E
              synthase (PGES, PIG12, MGST-IV, MGST1L1, TP53I12, MGST1-L1)
              and six CpG islands, complete sequence
          Length = 125756

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 280    gctcagtttggcctctgcctc 300
              |||||||||||||||||||||
Sbjct: 108832 gctcagtttggcctctgcctc 108852

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>emb|AL589847.6| Human DNA sequence from clone RP13-477D10 on chromosome X, complete
             sequence
          Length = 103196

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 246   gttctttctcctctttcttcc 266
             |||||||||||||||||||||
Sbjct: 43752 gttctttctcctctttcttcc 43732

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>gb|AF363646.1| Bensingtonia sakaguchii 26S ribosomal RNA gene, partial sequence
          Length = 599

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 399 cagcatcagttttcgagcgtg 419
           |||||||||||||||||||||
Sbjct: 448 cagcatcagttttcgagcgtg 468

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>gb|AC111115.13| Mus musculus chromosome 5, clone RP23-213H20, complete sequence
          Length = 201694

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ttctttctcctctttcttcc 266
             ||||||||||||||||||||
Sbjct: 43421 ttctttctcctctttcttcc 43402

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>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ttctttctcctctttcttcc 266
              ||||||||||||||||||||
Sbjct: 153207 ttctttctcctctttcttcc 153188

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>ref|XM_872250.1| PREDICTED: Bos taurus similar to C1q domain containing 1 isoform 1,
           transcript variant 9 (LOC536187), mRNA
          Length = 3241

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 aagctttttcttttcagcct 326
           ||||||||||||||||||||
Sbjct: 237 aagctttttcttttcagcct 218

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>ref|XM_616309.2| PREDICTED: Bos taurus similar to C1q domain containing 1 isoform 1,
            transcript variant 1 (LOC536187), mRNA
          Length = 4151

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  aagctttttcttttcagcct 326
            ||||||||||||||||||||
Sbjct: 1067 aagctttttcttttcagcct 1048

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>ref|XM_871954.1| PREDICTED: Bos taurus similar to C1q domain containing 1 isoform 1,
           transcript variant 7 (LOC536187), mRNA
          Length = 3325

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 aagctttttcttttcagcct 326
           ||||||||||||||||||||
Sbjct: 346 aagctttttcttttcagcct 327

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>ref|XM_871851.1| PREDICTED: Bos taurus similar to C1q domain containing 1 isoform 1,
           transcript variant 6 (LOC536187), mRNA
          Length = 3477

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 aagctttttcttttcagcct 326
           ||||||||||||||||||||
Sbjct: 346 aagctttttcttttcagcct 327

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>ref|XM_871760.1| PREDICTED: Bos taurus similar to C1q domain containing 1 isoform 1,
           transcript variant 5 (LOC536187), mRNA
          Length = 3225

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 aagctttttcttttcagcct 326
           ||||||||||||||||||||
Sbjct: 237 aagctttttcttttcagcct 218

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>ref|XM_871655.1| PREDICTED: Bos taurus similar to C1q domain containing 1 isoform 1,
           transcript variant 4 (LOC536187), mRNA
          Length = 3102

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 aagctttttcttttcagcct 326
           ||||||||||||||||||||
Sbjct: 237 aagctttttcttttcagcct 218

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>ref|XM_871570.1| PREDICTED: Bos taurus similar to C1q domain containing 1 isoform 1,
           transcript variant 3 (LOC536187), mRNA
          Length = 2162

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 aagctttttcttttcagcct 326
           ||||||||||||||||||||
Sbjct: 346 aagctttttcttttcagcct 327

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>gb|AC160931.2| Mus musculus BAC clone RP24-311F12 from chromosome 12, complete
             sequence
          Length = 167090

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   ttctttctcctctttcttcc 266
             ||||||||||||||||||||
Sbjct: 79408 ttctttctcctctttcttcc 79427

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>gb|AC136628.2| Homo sapiens chromosome 5 clone RP11-798K23, complete sequence
          Length = 137132

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 364    ctccctgaaagcctcctgggcagc 387
              ||||||||||||||| ||||||||
Sbjct: 129740 ctccctgaaagcctcatgggcagc 129763

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>gb|DQ334078.1| Drosophila miranda CG12109 gene, partial cds
          Length = 1074

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 ctttttcttttcagcctttt 329
           ||||||||||||||||||||
Sbjct: 102 ctttttcttttcagcctttt 83

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>emb|AL389915.19| Human DNA sequence from clone RP11-438P9 on chromosome 9 Contains a
             ribosomal protein S16 (RPS16) pseudogene, a peptidylprolyl
             isomerase A (cyclophilin A) (PPIA) pseudogene and a CpG
             island, complete sequence
          Length = 199601

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   tttggcctctgcctcttcca 305
             ||||||||||||||||||||
Sbjct: 68653 tttggcctctgcctcttcca 68672

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>emb|AL390738.4| Human DNA sequence from clone RP11-438F9 on chromosome 13 Contains the
             Gsh-1 gene for homeobox protein Gsh-1 and three CpG
             islands, complete sequence
          Length = 200833

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   tcctcagcagggtttcctgc 349
             ||||||||||||||||||||
Sbjct: 30042 tcctcagcagggtttcctgc 30023

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>emb|Z99108.2|BSUB0005 Bacillus subtilis complete genome (section 5 of 21): from 813670 to
              1011078
          Length = 197409

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    tttttcttttcagccttttt 330
              ||||||||||||||||||||
Sbjct: 178928 tttttcttttcagccttttt 178909

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>emb|X96983.1|BS75DGREG B.subtilis chromosomal DNA (region 75 degrees: cspB upstream of glpPFKD
             operon)
          Length = 21808

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   tttttcttttcagccttttt 330
             ||||||||||||||||||||
Sbjct: 14143 tttttcttttcagccttttt 14124

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>ref|XM_695967.1| PREDICTED: Danio rerio similar to RW1 protein (LOC572268), mRNA
          Length = 3327

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 242  ttccgttctttctcctctttcttc 265
            |||| |||||||||||||||||||
Sbjct: 3038 ttcctttctttctcctctttcttc 3015

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>ref|XM_681944.1| PREDICTED: Danio rerio similar to RW1 protein (LOC558698), mRNA
          Length = 6229

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 242  ttccgttctttctcctctttcttc 265
            |||| |||||||||||||||||||
Sbjct: 4061 ttcctttctttctcctctttcttc 4038

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>ref|XM_680831.1| PREDICTED: Danio rerio similar to RW1 protein (LOC557719), mRNA
          Length = 6301

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 242  ttccgttctttctcctctttcttc 265
            |||| |||||||||||||||||||
Sbjct: 4133 ttcctttctttctcctctttcttc 4110

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>dbj|AK045552.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230209P08
            product:unclassifiable, full insert sequence
          Length = 1852

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  ttctttctcctctttcttcc 266
            ||||||||||||||||||||
Sbjct: 1459 ttctttctcctctttcttcc 1440

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>gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197909

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ttctttctcctctttcttcc 266
              ||||||||||||||||||||
Sbjct: 171106 ttctttctcctctttcttcc 171125

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>emb|BX548026.10| Zebrafish DNA sequence from clone CH211-193D9, complete sequence
          Length = 147902

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    gcgtgcatgtgagctcagct 434
              ||||||||||||||||||||
Sbjct: 135829 gcgtgcatgtgagctcagct 135848

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>gb|AC073465.5| Homo sapiens BAC clone RP11-158L8 from 2, complete sequence
          Length = 135752

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     gcagcatctttgtcagcatt 41
              ||||||||||||||||||||
Sbjct: 123317 gcagcatctttgtcagcatt 123336

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>gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome
            I, complete sequence
          Length = 99392

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 301  ttccataagctttttctttt 320
            ||||||||||||||||||||
Sbjct: 4945 ttccataagctttttctttt 4926

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>gb|AC113425.2| Homo sapiens chromosome 5 clone RP11-626B22, complete sequence
          Length = 180571

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 364    ctccctgaaagcctcctgggcagc 387
              ||||||||||||||| ||||||||
Sbjct: 135816 ctccctgaaagcctcatgggcagc 135839

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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 301     ttccataagctttttctttt 320
               ||||||||||||||||||||
Sbjct: 2501348 ttccataagctttttctttt 2501367

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>emb|AL954299.13| Mouse DNA sequence from clone RP23-399D3 on chromosome 2, complete
            sequence
          Length = 142229

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cagggtttcctgcctcacac 356
            ||||||||||||||||||||
Sbjct: 3409 cagggtttcctgcctcacac 3428

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>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
              sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ttctttctcctctttcttcc 266
              ||||||||||||||||||||
Sbjct: 135187 ttctttctcctctttcttcc 135206

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>gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, complete sequence
          Length = 153807

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   ttctttctcctctttcttcc 266
             ||||||||||||||||||||
Sbjct: 94034 ttctttctcctctttcttcc 94053

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>gb|BC103478.1| Rattus norvegicus similar to RIKEN cDNA 2210010N04 gene, mRNA (cDNA
            clone MGC:124730 IMAGE:7937275), complete cds
          Length = 4310

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  ttcctcagcagggtttcctg 348
            ||||||||||||||||||||
Sbjct: 3966 ttcctcagcagggtttcctg 3985

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>ref|NM_001037191.1| Rattus norvegicus similar to RIKEN cDNA 2210010N04 gene (RGD1306873),
            mRNA
          Length = 4310

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  ttcctcagcagggtttcctg 348
            ||||||||||||||||||||
Sbjct: 3966 ttcctcagcagggtttcctg 3985

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>gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, complete sequence
          Length = 187465

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ttctttctcctctttcttcc 266
             ||||||||||||||||||||
Sbjct: 98018 ttctttctcctctttcttcc 97999

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>gb|AC133158.2| Mus musculus BAC clone RP24-491F15 from 8, complete sequence
          Length = 172481

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ttctttctcctctttcttcc 266
              ||||||||||||||||||||
Sbjct: 170812 ttctttctcctctttcttcc 170793

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>gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complete sequence
          Length = 204183

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ttctttctcctctttcttcc 266
              ||||||||||||||||||||
Sbjct: 105251 ttctttctcctctttcttcc 105270

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>emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, complete sequence
          Length = 188745

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   ttccgttctttctcctctttcttc 265
             |||| |||||||||||||||||||
Sbjct: 78749 ttcctttctttctcctctttcttc 78772

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>emb|AL808141.8| Zebrafish DNA sequence from clone CH211-260N19, complete sequence
          Length = 147111

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   ttccgttctttctcctctttcttc 265
             |||| |||||||||||||||||||
Sbjct: 71294 ttcctttctttctcctctttcttc 71317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,673,753
Number of Sequences: 3902068
Number of extensions: 5673753
Number of successful extensions: 103168
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103018
Number of HSP's gapped (non-prelim): 143
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result