Clone Information

BLAST Search Result

Clone Name	rbart12e09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_193728.1\| Oryza sativa (japonica cultivar-group), predic...	170	3e-39
2	gb\|AF514859.1\| Oryza sativa (indica cultivar-group) ATP-dependen...	170	3e-39
3	gb\|AF450251.1\|AF450251 Oryza sativa blast-resistant mRNA, partia...	170	3e-39
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	170	3e-39
5	dbj\|AP003217.3\| Oryza sativa (japonica cultivar-group) genomic D...	170	3e-39
6	dbj\|AK102473.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	170	3e-39
7	gb\|AY109053.1\| Zea mays PCO106983 mRNA sequence	76	1e-10
8	emb\|AL445532.8\| Human DNA sequence from clone RP11-263K15 on chr...	44	0.43
9	gb\|AC182700.2\| Populus trichocarpa clone Pop1-73H20, complete se...	42	1.7
10	emb\|AL596327.5\| Human DNA sequence from clone RP11-110F24 on chr...	42	1.7
11	emb\|BX571721.8\| Zebrafish DNA sequence from clone DKEY-250L23 in...	42	1.7
12	gb\|AC025428.10\| Homo sapiens chromosome 10 clone RP11-475D12, co...	42	1.7
13	gb\|AC080093.6\| Homo sapiens BAC clone RP11-957J11 from 7, comple...	42	1.7
14	emb\|BX005018.8\| Zebrafish DNA sequence from clone DKEY-209K18, c...	42	1.7
15	gb\|AC167362.2\| Mus musculus BAC clone RP23-74P17 from chromosome...	40	6.8
16	gb\|AF038615.1\| Caenorhabditis elegans cosmid R02D3, complete seq...	40	6.8
17	emb\|CR391993.14\| Zebrafish DNA sequence from clone DKEY-3E17 in ...	40	6.8
18	gb\|AC145868.2\| Pan troglodytes BAC clone RP43-39F11 from 7, comp...	40	6.8
19	gb\|BC061232.1\| Mus musculus oxoglutarate dehydrogenase (lipoamid...	40	6.8
20	gb\|AC122046.2\| Mus musculus BAC clone RP24-449N4 from 7, complet...	40	6.8
21	ref\|XM_651128.1\| Entamoeba histolytica HM-1:IMSS ubiquitin carbo...	40	6.8
22	gb\|BC013670.1\| Mus musculus oxoglutarate dehydrogenase (lipoamid...	40	6.8
23	gb\|AC074000.8\| Homo sapiens BAC clone CTD-2023N18 from 7, comple...	40	6.8
24	gb\|AF045646.3\| Caenorhabditis elegans cosmid F56B3, complete seq...	40	6.8
25	emb\|AL359762.24\| Human DNA sequence from clone RP11-118B23 on ch...	40	6.8
26	emb\|AL096707.13\|HSJ729N16 Human DNA sequence from clone RP4-729N...	40	6.8
27	emb\|AL607152.21\| Mouse DNA sequence from clone RP23-198N14 on ch...	40	6.8
28	emb\|AL035076.1\|SPCC417 S.pombe chromosome III cosmid c417	40	6.8
29	emb\|BX548011.28\| Zebrafish DNA sequence from clone DKEY-237G15, ...	40	6.8
30	gb\|AC021956.8\| Homo sapiens chromosome 11, clone RP11-447I3, com...	40	6.8
31	gb\|AC162615.2\| Mus musculus chromosome 7, clone RP23-94C20, comp...	40	6.8
32	dbj\|AK220536.1\| Mus musculus mRNA for mKIAA4192 protein	40	6.8
33	gb\|AC091925.3\| Homo sapiens chromosome 5 clone RP11-278J6, compl...	40	6.8
34	gb\|AC104442.2\| Homo sapiens chromosome 3 clone RP11-905F6, compl...	40	6.8
35	gb\|AC021006.7\| Homo sapiens chromosome 11, clone RP11-124G5, com...	40	6.8
36	ref\|NM_010956.2\| Mus musculus oxoglutarate dehydrogenase (lipoam...	40	6.8
37	dbj\|AK147289.1\| Mus musculus cDNA, RIKEN full-length enriched li...	40	6.8
38	dbj\|AK150009.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	40	6.8
39	gb\|AC013603.17\| Homo sapiens, clone RP11-10D7, complete sequence	40	6.8
40	emb\|BX293993.10\| Zebrafish DNA sequence from clone DKEYP-5G9, co...	40	6.8
41	dbj\|AK169286.1\| Mus musculus cDNA, RIKEN full-length enriched li...	40	6.8
42	dbj\|AK088582.1\| Mus musculus 2 days neonate thymus thymic cells ...	40	6.8
43	gb\|AC003111.1\|AC003111 Human DNA from chromosome 19-specific cos...	40	6.8
44	dbj\|AK008811.1\| Mus musculus adult male stomach cDNA, RIKEN full...	40	6.8
45	ref\|NM_067479.3\| Caenorhabditis elegans R02D3.3 (R02D3.3) mRNA, ...	40	6.8
46	dbj\|AP000030.1\| Homo sapiens genomic DNA, chromosome 21q22.1, se...	40	6.8
47	gb\|AC138058.2\| Homo sapiens chromosome 3 clone RP11-298C2, compl...	40	6.8
48	gb\|AC155998.2\| Xenopus tropicalis clone ISB1-313L20, complete se...	40	6.8
49	dbj\|AK201619.1\| Mus musculus cDNA, clone:Y1G0138N03, strand:minu...	40	6.8
50	emb\|BX649497.23\| Zebrafish DNA sequence from clone DKEYP-15A6 in...	40	6.8
51	emb\|BX936298.17\| Zebrafish DNA sequence from clone DKEY-78L4 in ...	40	6.8
52	emb\|AL163051.5\|CNS01RIA Human chromosome 14 DNA sequence BAC R-8...	40	6.8
53	dbj\|AP001711.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.8
54	gb\|AC004066.1\|AC004066 Homo sapiens chromosome 4 clone B353C18 m...	40	6.8
55	emb\|Z11126.1\|CEZK643 Caenorhabditis elegans Cosmid ZK643, comple...	40	6.8
56	emb\|AL672074.19\| Mouse DNA sequence from clone RP23-404I18 on ch...	40	6.8
57	emb\|AL626772.10\| Mouse DNA sequence from clone RP23-90D4 on chro...	40	6.8
58	gb\|AC091144.12\| Homo sapiens chromosome 8, clone RP11-359B20, co...	40	6.8
59	dbj\|AP000252.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	6.8
60	dbj\|AP000212.1\| Homo sapiens genomic DNA, chromosome 21q22.1, D2...	40	6.8

>ref|NM_193728.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score =  170 bits (86), Expect = 3e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                       
Query: 337 ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 396
           |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 919 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 860

                                                                       
Query: 397 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 456
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 859 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 800

                     
Query: 457 gcacagctcc 466
           ||||||||||
Sbjct: 799 gcacagctcc 790

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>gb|AF514859.1| Oryza sativa (indica cultivar-group) ATP-dependent Clp protease
            (Pi-HIT-1) gene, complete cds
          Length = 2750

 Score =  170 bits (86), Expect = 3e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                        
Query: 337  ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 396
            |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 2182 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 2123

                                                                        
Query: 397  ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 456
            | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 2122 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 2063

                      
Query: 457  gcacagctcc 466
            ||||||||||
Sbjct: 2062 gcacagctcc 2053

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>gb|AF450251.1|AF450251 Oryza sativa blast-resistant mRNA, partial sequence
          Length = 613

 Score =  170 bits (86), Expect = 3e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                       
Query: 337 ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 396
           |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 369 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 310

                                                                       
Query: 397 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 456
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 309 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 250

                     
Query: 457 gcacagctcc 466
           ||||||||||
Sbjct: 249 gcacagctcc 240

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  170 bits (86), Expect = 3e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                            
Query: 337      ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 396
                |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 17747747 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 17747688

                                                                            
Query: 397      ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 456
                | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 17747687 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 17747628

                          
Query: 457      gcacagctcc 466
                ||||||||||
Sbjct: 17747627 gcacagctcc 17747618

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>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0094H06
          Length = 147245

 Score =  170 bits (86), Expect = 3e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                          
Query: 337    ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 396
              |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 129282 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 129223

                                                                          
Query: 397    ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 456
              | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 129222 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 129163

                        
Query: 457    gcacagctcc 466
              ||||||||||
Sbjct: 129162 gcacagctcc 129153

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>dbj|AK102473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H09, full
           insert sequence
          Length = 1257

 Score =  170 bits (86), Expect = 3e-39
 Identities = 119/130 (91%)
 Strand = Plus / Minus

                                                                       
Query: 337 ctccacttacgctgccattaccatttcgaatgagcttttcctctgaaggtagatttttca 396
           |||||||| | ||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 987 ctccacttgcactgccattaccattttgaataagcttctcctctgaaggtagatttttca 928

                                                                       
Query: 397 ttatttttctagttggtcctgaagcgttccacaagtaccacatacgtgattttgggggtg 456
           | ||||||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||
Sbjct: 927 tgatttttctagttggtcctgaagcattccataagtaccacacacgcgattttggaggtg 868

                     
Query: 457 gcacagctcc 466
           ||||||||||
Sbjct: 867 gcacagctcc 858

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>gb|AY109053.1| Zea mays PCO106983 mRNA sequence
          Length = 704

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 110/134 (82%)
 Strand = Plus / Plus

                                                                       
Query: 315 gcctccttcagcattccatcagctccacttacgctgccattaccatttcgaatgagcttt 374
           |||||||| ||| |||||||| ||||| || | || || ||||||||  |||| || || 
Sbjct: 176 gcctccttgagctttccatcatctccagttgcacttccgttaccattgtgaattagtttc 235

                                                                       
Query: 375 tcctctgaaggtagatttttcattatttttctagttggtcctgaagcgttccacaagtac 434
           |||||||||||||||| |||||| || || || || || || ||||| ||||||||||||
Sbjct: 236 tcctctgaaggtagatgtttcatgatcttcctggtcggccccgaagccttccacaagtac 295

                         
Query: 435 cacatacgtgattt 448
           |||| ||| |||||
Sbjct: 296 cacacacgcgattt 309

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>emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chromosome 9 Contains the
             3' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB), complete sequence
          Length = 171629

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 392   tttcattatttttctagttggt 413
             ||||||||||||||||||||||
Sbjct: 49835 tttcattatttttctagttggt 49856

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>gb|AC182700.2| Populus trichocarpa clone Pop1-73H20, complete sequence
          Length = 90044

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gaaaaataatattacaataca 150
             |||||||||||||||||||||
Sbjct: 19341 gaaaaataatattacaataca 19321

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>emb|AL596327.5| Human DNA sequence from clone RP11-110F24 on chromosome 1, complete
             sequence
          Length = 94737

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 390   tttttcattatttttctagtt 410
             |||||||||||||||||||||
Sbjct: 33427 tttttcattatttttctagtt 33447

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>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8,
              complete sequence
          Length = 168402

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 364    gaatgagcttttcctctgaag 384
              |||||||||||||||||||||
Sbjct: 132435 gaatgagcttttcctctgaag 132415

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>gb|AC025428.10| Homo sapiens chromosome 10 clone RP11-475D12, complete sequence
          Length = 174906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   tatacaggaaaaataatatta 143
             |||||||||||||||||||||
Sbjct: 81071 tatacaggaaaaataatatta 81051

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>gb|AC080093.6| Homo sapiens BAC clone RP11-957J11 from 7, complete sequence
          Length = 37522

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    tagacaaaaacaagtatacac 41
             |||||||||||||||||||||
Sbjct: 23589 tagacaaaaacaagtatacac 23609

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>emb|BX005018.8| Zebrafish DNA sequence from clone DKEY-209K18, complete sequence
          Length = 183614

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 364    gaatgagcttttcctctgaag 384
              |||||||||||||||||||||
Sbjct: 111781 gaatgagcttttcctctgaag 111761

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>gb|AC167362.2| Mus musculus BAC clone RP23-74P17 from chromosome 7, complete sequence
          Length = 215537

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    aggaaaaataatattacaat 147
              ||||||||||||||||||||
Sbjct: 176658 aggaaaaataatattacaat 176639

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>gb|AF038615.1| Caenorhabditis elegans cosmid R02D3, complete sequence
          Length = 32218

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 361 ttcgaatgagcttttcctctgaag 384
           ||||| ||||||||||||||||||
Sbjct: 605 ttcgattgagcttttcctctgaag 628

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>emb|CR391993.14| Zebrafish DNA sequence from clone DKEY-3E17 in linkage group 22,
             complete sequence
          Length = 122651

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   agatcaataaatcaaccgtataca 128
             ||||||||||||||||| ||||||
Sbjct: 64421 agatcaataaatcaaccatataca 64398

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>gb|AC145868.2| Pan troglodytes BAC clone RP43-39F11 from 7, complete sequence
          Length = 209787

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    gcactgcaagatcaataaat 116
             ||||||||||||||||||||
Sbjct: 71760 gcactgcaagatcaataaat 71779

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>gb|BC061232.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA
           clone IMAGE:6535602), complete cds
          Length = 1980

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 76  gtcctgaagccttccacaagtacc 53

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>gb|AC122046.2| Mus musculus BAC clone RP24-449N4 from 7, complete sequence
          Length = 150101

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aggaaaaataatattacaat 147
             ||||||||||||||||||||
Sbjct: 70766 aggaaaaataatattacaat 70785

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>ref|XM_651128.1| Entamoeba histolytica HM-1:IMSS ubiquitin carboxyl-terminal hydrolase
            (16.t00053) partial mRNA
          Length = 5580

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  gtagatttttcattattttt 404
            ||||||||||||||||||||
Sbjct: 1354 gtagatttttcattattttt 1335

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>gb|BC013670.1| Mus musculus oxoglutarate dehydrogenase (lipoamide), mRNA (cDNA
           clone MGC:19042 IMAGE:4188988), complete cds
          Length = 4035

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 54  gtcctgaagccttccacaagtacc 31

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>gb|AC074000.8| Homo sapiens BAC clone CTD-2023N18 from 7, complete sequence
          Length = 136723

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    gcactgcaagatcaataaat 116
             ||||||||||||||||||||
Sbjct: 53040 gcactgcaagatcaataaat 53021

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>gb|AF045646.3| Caenorhabditis elegans cosmid F56B3, complete sequence
          Length = 39874

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   agatttttcattatttttct 406
             ||||||||||||||||||||
Sbjct: 36239 agatttttcattatttttct 36258

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>emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on chromosome 1 Contains
            the 3' end of the gene for RNA processing factor 1
            (RPF1), the GNG5 gene for guanine nucleotide binding
            protein (G protein), gamma 5, the SPATA1 gene for
            spermatogenesis associated 1, the CTBS gene for
            chitobiase, di-N-acetyl- and a CpG island, complete
            sequence
          Length = 125565

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 389  atttttcattatttttctag 408
            ||||||||||||||||||||
Sbjct: 6107 atttttcattatttttctag 6126

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>emb|AL096707.13|HSJ729N16 Human DNA sequence from clone RP4-729N16 on chromosome 10, complete
             sequence
          Length = 154469

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    gaagtagacaaaaacaagta 36
             ||||||||||||||||||||
Sbjct: 82478 gaagtagacaaaaacaagta 82459

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>emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on chromosome 11, complete
              sequence
          Length = 232408

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 412    gtcctgaagcgttccacaagtacc 435
              |||||||||| |||||||||||||
Sbjct: 104189 gtcctgaagccttccacaagtacc 104166

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>emb|AL035076.1|SPCC417 S.pombe chromosome III cosmid c417
          Length = 40383

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   acatatctcaagttgatgag 314
             ||||||||||||||||||||
Sbjct: 15747 acatatctcaagttgatgag 15728

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>emb|BX548011.28| Zebrafish DNA sequence from clone DKEY-237G15, complete sequence
          Length = 211004

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    aagtagacaaaaacaagtat 37
             ||||||||||||||||||||
Sbjct: 82343 aagtagacaaaaacaagtat 82362

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>gb|AC021956.8| Homo sapiens chromosome 11, clone RP11-447I3, complete sequence
          Length = 197864

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    tttcattatttttctagttg 411
              ||||||||||||||||||||
Sbjct: 178905 tttcattatttttctagttg 178924

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>gb|AC162615.2| Mus musculus chromosome 7, clone RP23-94C20, complete sequence
          Length = 130735

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 381   gaaggtagatttttcattattttt 404
             ||||||||||||| ||||||||||
Sbjct: 41590 gaaggtagattttgcattattttt 41567

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>dbj|AK220536.1| Mus musculus mRNA for mKIAA4192 protein
          Length = 4089

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 82  gtcctgaagccttccacaagtacc 59

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>gb|AC091925.3| Homo sapiens chromosome 5 clone RP11-278J6, complete sequence
          Length = 164668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    atcctaaccccatggtgatg 280
              ||||||||||||||||||||
Sbjct: 140259 atcctaaccccatggtgatg 140278

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>gb|AC104442.2| Homo sapiens chromosome 3 clone RP11-905F6, complete sequence
          Length = 219227

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  tttcctctgaaggtagattt 392
            ||||||||||||||||||||
Sbjct: 4734 tttcctctgaaggtagattt 4715

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>gb|AC021006.7| Homo sapiens chromosome 11, clone RP11-124G5, complete sequence
          Length = 183772

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   tttcattatttttctagttg 411
             ||||||||||||||||||||
Sbjct: 87166 tttcattatttttctagttg 87185

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>ref|NM_010956.2| Mus musculus oxoglutarate dehydrogenase (lipoamide) (Ogdh), mRNA
          Length = 6638

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 121 gtcctgaagccttccacaagtacc 98

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>dbj|AK147289.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1007N08 product:oxoglutarate dehydrogenase
           (lipoamide), full insert sequence
          Length = 6638

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 121 gtcctgaagccttccacaagtacc 98

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>dbj|AK150009.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:G530117I02 product:oxoglutarate
           dehydrogenase (lipoamide), full insert sequence
          Length = 4127

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 86  gtcctgaagccttccacaagtacc 63

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>gb|AC013603.17| Homo sapiens, clone RP11-10D7, complete sequence
          Length = 177839

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   ggaaaaataatattacaata 148
             ||||||||||||||||||||
Sbjct: 16833 ggaaaaataatattacaata 16852

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>emb|BX293993.10| Zebrafish DNA sequence from clone DKEYP-5G9, complete sequence
          Length = 173227

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    aagtagacaaaaacaagtat 37
             ||||||||||||||||||||
Sbjct: 41709 aagtagacaaaaacaagtat 41690

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>dbj|AK169286.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:I920176A16 product:oxoglutarate dehydrogenase
           (lipoamide), full insert sequence
          Length = 4155

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 112 gtcctgaagccttccacaagtacc 89

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>dbj|AK088582.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430020N12
           product:oxoglutarate dehydrogenase (lipoamide) (EC
           1.2.4.2) E1 component (fragment) homolog [Mus musculus],
           full insert sequence
          Length = 3554

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 48  gtcctgaagccttccacaagtacc 25

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>gb|AC003111.1|AC003111 Human DNA from chromosome 19-specific cosmid R28194, genomic sequence,
             complete sequence
          Length = 40649

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    caagtatacacctagaacac 50
             ||||||||||||||||||||
Sbjct: 21033 caagtatacacctagaacac 21014

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>dbj|AK008811.1| Mus musculus adult male stomach cDNA, RIKEN full-length enriched
           library, clone:2210403E04 product:unclassifiable, full
           insert sequence
          Length = 779

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 76  gtcctgaagccttccacaagtacc 53

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>ref|NM_067479.3| Caenorhabditis elegans R02D3.3 (R02D3.3) mRNA, complete cds
          Length = 1628

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 361  ttcgaatgagcttttcctctgaag 384
            ||||| ||||||||||||||||||
Sbjct: 1463 ttcgattgagcttttcctctgaag 1440

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>dbj|AP000030.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 1/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   atcctaaccccatggtgatg 280
             ||||||||||||||||||||
Sbjct: 84357 atcctaaccccatggtgatg 84376

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>gb|AC138058.2| Homo sapiens chromosome 3 clone RP11-298C2, complete sequence
          Length = 154123

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tttcctctgaaggtagattt 392
             ||||||||||||||||||||
Sbjct: 79348 tttcctctgaaggtagattt 79329

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>gb|AC155998.2| Xenopus tropicalis clone ISB1-313L20, complete sequence
          Length = 86223

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   tttttcattatttttctagt 409
             ||||||||||||||||||||
Sbjct: 79753 tttttcattatttttctagt 79734

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>dbj|AK201619.1| Mus musculus cDNA, clone:Y1G0138N03, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000064907, based on BLAT search
          Length = 172

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 412 gtcctgaagcgttccacaagtacc 435
           |||||||||| |||||||||||||
Sbjct: 70  gtcctgaagccttccacaagtacc 47

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>emb|BX649497.23| Zebrafish DNA sequence from clone DKEYP-15A6 in linkage group 22,
             complete sequence
          Length = 106459

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    aagtagacaaaaacaagtat 37
             ||||||||||||||||||||
Sbjct: 65748 aagtagacaaaaacaagtat 65767

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>emb|BX936298.17| Zebrafish DNA sequence from clone DKEY-78L4 in linkage group 22,
             complete sequence
          Length = 234949

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   agatcaataaatcaaccgtataca 128
             ||||||||||||||||| ||||||
Sbjct: 65712 agatcaataaatcaaccatataca 65735

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>emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-872J21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188020

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 387   agatttttcattatttttctagtt 410
             ||||||| ||||||||||||||||
Sbjct: 96509 agattttacattatttttctagtt 96532

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>dbj|AP001711.1| Homo sapiens genomic DNA, chromosome 21q, section 55/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    atcctaaccccatggtgatg 280
              ||||||||||||||||||||
Sbjct: 231363 atcctaaccccatggtgatg 231382

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>gb|AC004066.1|AC004066 Homo sapiens chromosome 4 clone B353C18 map 4q25, complete sequence
          Length = 139877

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    atacaggaaaaataatattacaat 147
              |||||| |||||||||||||||||
Sbjct: 135824 atacagtaaaaataatattacaat 135847

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>emb|Z11126.1|CEZK643 Caenorhabditis elegans Cosmid ZK643, complete sequence
          Length = 39534

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 390   tttttcattatttttctagt 409
             ||||||||||||||||||||
Sbjct: 15270 tttttcattatttttctagt 15289

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>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete
              sequence
          Length = 171593

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    tttcattatttttctagttg 411
              ||||||||||||||||||||
Sbjct: 127922 tttcattatttttctagttg 127903

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>emb|AL626772.10| Mouse DNA sequence from clone RP23-90D4 on chromosome 4, complete
             sequence
          Length = 230614

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   atacaggaaaaataatatta 143
             ||||||||||||||||||||
Sbjct: 77737 atacaggaaaaataatatta 77718

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>gb|AC091144.12| Homo sapiens chromosome 8, clone RP11-359B20, complete sequence
          Length = 185872

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 129  ggaaaaataatattacaata 148
            ||||||||||||||||||||
Sbjct: 6533 ggaaaaataatattacaata 6514

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>dbj|AP000252.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
            clone:T650, complete sequence
          Length = 67008

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 261  atcctaaccccatggtgatg 280
            ||||||||||||||||||||
Sbjct: 7200 atcctaaccccatggtgatg 7219

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>dbj|AP000212.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 10/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   atcctaaccccatggtgatg 280
             ||||||||||||||||||||
Sbjct: 44351 atcctaaccccatggtgatg 44370


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,856,467
Number of Sequences: 3902068
Number of extensions: 4856467
Number of successful extensions: 106913
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106807
Number of HSP's gapped (non-prelim): 106
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result