ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster 66 1e-07
2gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
4dbj|AK067827.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
6dbj|AK058531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
7gb|AC154479.2| Mus musculus BAC clone RP24-135I6 from chromosome... 48 0.028
8gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complet... 44 0.44
9gb|AC134882.2| Homo sapiens BAC clone RP11-886I11 from Y, comple... 44 0.44
10emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chr... 44 0.44
11gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, comple... 44 0.44
12emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
15dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
16gb|AC147240.3| Mus musculus BAC clone RP23-398F20 from 10, compl... 42 1.7
17gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, com... 40 6.8
18gb|AC102081.15| Mus musculus chromosome 18, clone RP23-43H5, com... 40 6.8
19gb|DP000016.1| Pan troglodytes target 1 genomic scaffold 40 6.8
20gb|AC102327.8| Mus musculus chromosome 15, clone RP24-502J3, com... 40 6.8
21gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 40 6.8
22gb|DQ125486.1| Toxoplasma gondii structural maintenance of chrom... 40 6.8
23gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.8
24ref|XM_713538.1| Candida albicans SC5314 hypothetical protein (C... 40 6.8
25gb|AC091637.1| Pan troglodytes clone RP43-176G10, complete sequence 40 6.8
26gb|AC164304.2| Mus musculus BAC clone RP23-261B24 from chromosom... 40 6.8
27gb|AC002465.1| Homo sapiens BAC clone CTA-343P13 from 7, complet... 40 6.8
28emb|CR788304.8| Zebrafish DNA sequence from clone DKEY-56J15 in ... 40 6.8
29gb|AC139757.4| Mus musculus BAC clone RP23-440H11 from chromosom... 40 6.8
30gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, comple... 40 6.8
31gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, comple... 40 6.8
32gb|AC108781.9| Mus musculus, clone RP23-304K14, complete sequence 40 6.8
33emb|AL161420.10| Human DNA sequence from clone RP11-155N3 on chr... 40 6.8
34emb|AL137125.7| Human DNA sequence from clone RP11-175E13 on chr... 40 6.8
35emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chr... 40 6.8
36emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 i... 40 6.8
37emb|BX321910.6| Zebrafish DNA sequence from clone DKEYP-25B4 in ... 40 6.8
38gb|AC015563.11| Homo sapiens chromosome 18, clone RP11-344B2, co... 40 6.8
39gb|AC011825.13| Homo sapiens chromosome 18, clone RP11-53I6, com... 40 6.8
40gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Ca... 40 6.8
41gb|AC149040.2| Medicago truncatula chromosome 7 BAC clone mth2-9... 40 6.8
42gb|AC156501.3| Mus musculus BAC clone RP23-358M3 from chromosome... 40 6.8
43gb|AC159019.4| Pan troglodytes BAC clone CH251-550K12 from chrom... 40 6.8
44gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Can... 40 6.8
45gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 6.8
46gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold 40 6.8
47gb|AC154322.1| Mus musculus BAC clone RP23-299P17 from chromosom... 40 6.8
48dbj|AB121692.1| Mus musculus peptidylarginine deiminase gene clu... 40 6.8
49gb|AC055863.16| Homo sapiens chromosome 17, clone RP11-478P5, co... 40 6.8
50gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana... 40 6.8
51dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
52dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
53emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 6.8
54emb|Z98200.9|HS111B22 Human DNA sequence from clone RP1-111B22 o... 40 6.8
55gb|AC154388.4| Mus musculus BAC clone RP23-14P7 from chromosome ... 40 6.8
56emb|AL732617.24| Mouse DNA sequence from clone RP23-196C23 on ch... 40 6.8
57emb|CT010520.15| Mouse DNA sequence from clone RP23-349A19 on ch... 40 6.8
58emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 i... 40 6.8
59emb|AL645625.15| Mouse DNA sequence from clone RP23-183L1 on chr... 40 6.8
60emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on ch... 40 6.8 
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster
          Length = 162249

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 165/209 (78%)
 Strand = Plus / Minus

                                                                         
Query: 224   ggagttgaggttggtttggcgcagcttgcgctcctcggagagcctcttggcgaagcggac 283
             ||||||||||||||  ||||| ||| | ||||| ||||||||| |||||||||||||  |
Sbjct: 74183 ggagttgaggttggcctggcgtagcctccgctcgtcggagagcatcttggcgaagcgcgc 74124

                                                                         
Query: 284   gagcgcctcttcattggtgccagcaccgtcgacggtctcatacatcccattgtcaatgtt 343
              ||||| || || || |||||  | ||| |||||| ||| ||||||||  |||| |||||
Sbjct: 74123 aagcgcgtcctcgtttgtgccctcgccggcgacgggctcgtacatccccgtgtcgatgtt 74064

                                                                         
Query: 344   tacccgggatacggtcttggtgagcagattcttaccgatcccaataagcgcctccatgtt 403
              || |  |  || | |||  | || || ||||| ||||||||||| || |||||||||||
Sbjct: 74063 cactctcgccaccggcttcttcagaagcttcttcccgatcccaatcagtgcctccatgtt 74004

                                          
Query: 404   ctctttggtggcgatatccaccgaggacg 432
             ||| || || ||||| |||||||| ||||
Sbjct: 74003 ctccttcgtcgcgatgtccaccgacgacg 73975



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 378   ccgatcccaataagcgcctccatgttctctttggtggcgatatccac 424
             ||||||||||| || | |||||||||||| ||||| ||||| |||||
Sbjct: 41867 ccgatcccaatcagagactccatgttctccttggtcgcgatgtccac 41913
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>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0042J05, complete sequence
          Length = 150295

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                         
Query: 378   ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 437
             |||||||| || || |||||||||||||| |  || |||||||||||||| ||||| |||
Sbjct: 22459 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 22400

                
Query: 438   ccc 440
             |||
Sbjct: 22399 ccc 22397



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 393   gcctccatgttctctttggtggcgatatccaccgaggacgtttgcccc 440
             |||||||||||||| || || ||||| |||||||| ||||| ||||||
Sbjct: 10141 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccc 10094
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                            
Query: 378      ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 437
                |||||||| || || |||||||||||||| |  || |||||||||||||| ||||| |||
Sbjct: 23006456 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 23006397

                   
Query: 438      ccc 440
                |||
Sbjct: 23006396 ccc 23006394



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 393      gcctccatgttctctttggtggcgatatccaccgaggacgtttgcccc 440
                |||||||||||||| || || ||||| |||||||| ||||| ||||||
Sbjct: 22994138 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccc 22994091
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>dbj|AK067827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120O20, full
            insert sequence
          Length = 2434

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 378  ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 437
            |||||||| || || |||||||||||||| |  || |||||||||||||| ||||| |||
Sbjct: 2050 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 1991

               
Query: 438  ccc 440
            |||
Sbjct: 1990 ccc 1988
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                            
Query: 378      ccgatcccaataagcgcctccatgttctctttggtggcgatatccaccgaggacgtttgc 437
                |||||||| || || |||||||||||||| |  || |||||||||||||| ||||| |||
Sbjct: 23316366 ccgatcccgatcagtgcctccatgttctcctccgtcgcgatatccaccgacgacgtgtgc 23316307

                   
Query: 438      ccc 440
                |||
Sbjct: 23316306 ccc 23316304



 Score = 48.1 bits (24), Expect = 0.028
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 393      gcctccatgttctctttggtggcgatatccaccgaggacgtttgcccc 440
                |||||||||||||| || || ||||| |||||||| ||||| ||||||
Sbjct: 23304048 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccc 23304001
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>dbj|AK058531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A08, full
            insert sequence
          Length = 1618

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                        
Query: 393  gcctccatgttctctttggtggcgatatccaccgaggacgtttgccccgtgagcgagtcg 452
            |||||||||||||| || || ||||| |||||||| ||||| ||||||   ||||| |||
Sbjct: 1272 gcctccatgttctccttcgtcgcgatgtccaccgacgacgtgtgcccctccagcgaatcg 1213

                              
Query: 453  tcctggatgcgcaggtag 470
            ||||| || || ||||||
Sbjct: 1212 tcctgaatacggaggtag 1195
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>gb|AC154479.2| Mus musculus BAC clone RP24-135I6 from chromosome 9, complete sequence
          Length = 153964

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 196   ttcttcgtctctcttctcttctct 219
             ||||||||||||||||||||||||
Sbjct: 73555 ttcttcgtctctcttctcttctct 73578
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>gb|AC134878.3| Homo sapiens BAC clone RP11-131M6 from Y, complete sequence
          Length = 155813

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 119   acaatcataaatcataattattaaag 144
             |||||||||||||| |||||||||||
Sbjct: 19350 acaatcataaatcagaattattaaag 19325
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>gb|AC134882.2| Homo sapiens BAC clone RP11-886I11 from Y, complete sequence
          Length = 152654

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 119    acaatcataaatcataattattaaag 144
              |||||||||||||| |||||||||||
Sbjct: 138756 acaatcataaatcagaattattaaag 138731
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>emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chromosome 22, complete
              sequence
          Length = 211173

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 119    acaatcataaatcataattattaaag 144
              |||||||||||||| |||||||||||
Sbjct: 202080 acaatcataaatcagaattattaaag 202055
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>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence
          Length = 191211

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 110   ataactaaaacaatcataaatc 131
             ||||||||||||||||||||||
Sbjct: 66284 ataactaaaacaatcataaatc 66305
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>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01,
             complete sequence
          Length = 148353

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 203   tctctcttctcttctctacttggag 227
             ||||||||||||||||||| |||||
Sbjct: 44129 tctctcttctcttctctacgtggag 44153
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 203      tctctcttctcttctctacttggag 227
                ||||||||||||||||||| |||||
Sbjct: 18462774 tctctcttctcttctctacgtggag 18462798
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 203     tctctcttctcttctctactt 223
               |||||||||||||||||||||
Sbjct: 7088983 tctctcttctcttctctactt 7089003



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 203      tctctcttctcttctctact 222
                ||||||||||||||||||||
Sbjct: 19662657 tctctcttctcttctctact 19662638
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>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   tctctcttctcttctctactt 223
             |||||||||||||||||||||
Sbjct: 92402 tctctcttctcttctctactt 92422
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>gb|AC147240.3| Mus musculus BAC clone RP23-398F20 from 10, complete sequence
          Length = 195921

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   aaaacaatcataaatcataat 136
             |||||||||||||||||||||
Sbjct: 83818 aaaacaatcataaatcataat 83838
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>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence
          Length = 138057

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    tggacaacatacatctttat 62
             ||||||||||||||||||||
Sbjct: 29313 tggacaacatacatctttat 29294
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>gb|AC102081.15| Mus musculus chromosome 18, clone RP23-43H5, complete sequence
          Length = 245125

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 207  tcttctcttctctacttggagttg 230
            |||||||||||||| |||||||||
Sbjct: 9753 tcttctcttctctagttggagttg 9730
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>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     tcgtctctcttctcttctct 219
               ||||||||||||||||||||
Sbjct: 1156231 tcgtctctcttctcttctct 1156212
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>gb|AC102327.8| Mus musculus chromosome 15, clone RP24-502J3, complete sequence
          Length = 188266

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   taagcattgtaggtagggct 196
             ||||||||||||||||||||
Sbjct: 65974 taagcattgtaggtagggct 65955
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>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   tggacaacatacatctttat 62
            ||||||||||||||||||||
Sbjct: 3647 tggacaacatacatctttat 3666
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>gb|DQ125486.1| Toxoplasma gondii structural maintenance of chromosome 2 (SMC2) gene,
            complete cds
          Length = 18600

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  cttcttcgtctctcttctct 214
            ||||||||||||||||||||
Sbjct: 4108 cttcttcgtctctcttctct 4127
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 443     gagcgagtcgtcctggatgcgcaggtag 470
               ||||| |||||||||||||||| |||||
Sbjct: 3322205 gagcgcgtcgtcctggatgcgctggtag 3322178
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>ref|XM_713538.1| Candida albicans SC5314 hypothetical protein (CaO19_7473), mRNA
          Length = 2274

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 taaatcataattattaaagt 145
           ||||||||||||||||||||
Sbjct: 939 taaatcataattattaaagt 920
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>gb|AC091637.1| Pan troglodytes clone RP43-176G10, complete sequence
          Length = 51190

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tcgtctctcttctcttctct 219
             ||||||||||||||||||||
Sbjct: 18933 tcgtctctcttctcttctct 18914
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>gb|AC164304.2| Mus musculus BAC clone RP23-261B24 from chromosome 14, complete sequence
          Length = 184690

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 195    cttcttcgtctctcttctcttctctact 222
              |||||| ||||| |||||||||||||||
Sbjct: 123572 cttcttggtctcacttctcttctctact 123599
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>gb|AC002465.1| Homo sapiens BAC clone CTA-343P13 from 7, complete sequence
          Length = 155881

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tcgtctctcttctcttctct 219
             ||||||||||||||||||||
Sbjct: 15403 tcgtctctcttctcttctct 15384
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>emb|CR788304.8| Zebrafish DNA sequence from clone DKEY-56J15 in linkage group 2,
            complete sequence
          Length = 20264

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  taaaacaatcataaatcata 134
            ||||||||||||||||||||
Sbjct: 3279 taaaacaatcataaatcata 3260
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>gb|AC139757.4| Mus musculus BAC clone RP23-440H11 from chromosome 18, complete sequence
          Length = 193847

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    tcttctcttctctacttggagttg 230
              |||||||||||||| |||||||||
Sbjct: 149059 tcttctcttctctagttggagttg 149036
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>gb|AC115298.6| Mus musculus BAC clone RP23-224G24 from X, complete sequence
          Length = 184032

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    tcgtctctcttctcttctct 219
              ||||||||||||||||||||
Sbjct: 160377 tcgtctctcttctcttctct 160358
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>gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, complete sequence
          Length = 198453

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    tacatcccattgtcaatgtt 343
              ||||||||||||||||||||
Sbjct: 169133 tacatcccattgtcaatgtt 169114
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>gb|AC108781.9| Mus musculus, clone RP23-304K14, complete sequence
          Length = 183718

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 112    aactaaaacaatcataaatcataa 135
              |||||||| |||||||||||||||
Sbjct: 135487 aactaaaataatcataaatcataa 135510
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>emb|AL161420.10| Human DNA sequence from clone RP11-155N3 on chromosome 13 Contains the
             3' end of the gene for zizimin1 (KIAA1058) and a novel
             gene, complete sequence
          Length = 163316

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   ggagttgaggttggtttggc 243
             ||||||||||||||||||||
Sbjct: 94703 ggagttgaggttggtttggc 94684
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>emb|AL137125.7| Human DNA sequence from clone RP11-175E13 on chromosome 9p23-24.3
             Contains part of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 92384

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   ttcttcgtctctcttctcttctct 219
             |||||| |||||||||||||||||
Sbjct: 12746 ttcttcttctctcttctcttctct 12769
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>emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chromosome 11, complete
              sequence
          Length = 193528

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 196    ttcttcgtctctcttctcttctct 219
              |||||| |||||||||||||||||
Sbjct: 111070 ttcttcttctctcttctcttctct 111047
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>emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 in linkage group 20
             Contains the gene for a novel protein similar to
             vertebrate fibronectin type III domain containing 1
             (FNDC1), the 5' end of the gene for a novel protein
             similar to vertebrate otoferlin (OTOF), a novel gene and
             two CpG islands, complete sequence
          Length = 163523

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   tcgtctctcttctcttctct 219
             ||||||||||||||||||||
Sbjct: 58942 tcgtctctcttctcttctct 58961
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>emb|BX321910.6| Zebrafish DNA sequence from clone DKEYP-25B4 in linkage group 7, complete
              sequence
          Length = 167869

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    aatcataaatcataattatt 140
              ||||||||||||||||||||
Sbjct: 124459 aatcataaatcataattatt 124478
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>gb|AC015563.11| Homo sapiens chromosome 18, clone RP11-344B2, complete sequence
          Length = 214984

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 203   tctctcttctcttctctacttgga 226
             ||||| ||||||||||||||||||
Sbjct: 44813 tctctgttctcttctctacttgga 44836
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>gb|AC011825.13| Homo sapiens chromosome 18, clone RP11-53I6, complete sequence
          Length = 176222

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 203    tctctcttctcttctctacttgga 226
              ||||| ||||||||||||||||||
Sbjct: 136657 tctctgttctcttctctacttgga 136680
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>gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 213550

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   ctctcttctcttctctactt 223
             ||||||||||||||||||||
Sbjct: 71523 ctctcttctcttctctactt 71542
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>gb|AC149040.2| Medicago truncatula chromosome 7 BAC clone mth2-9f22, complete sequence
          Length = 120423

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   ttcttcgtctctcttctcttctct 219
             |||||| |||||||||||||||||
Sbjct: 13700 ttcttcttctctcttctcttctct 13723
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>gb|AC156501.3| Mus musculus BAC clone RP23-358M3 from chromosome 14, complete sequence
          Length = 195115

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   aactaaaacaatcataaatcataa 135
             |||||||| |||||||||||||||
Sbjct: 92475 aactaaaataatcataaatcataa 92452
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>gb|AC159019.4| Pan troglodytes BAC clone CH251-550K12 from chromosome unknown, complete
              sequence
          Length = 196429

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     caagtggacaacatacatctttat 62
              ||||| ||||||||||||||||||
Sbjct: 104225 caagttgacaacatacatctttat 104202
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>gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 191825

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   ctctcttctcttctctactt 223
             ||||||||||||||||||||
Sbjct: 32265 ctctcttctcttctctactt 32246
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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     tcgtctctcttctcttctct 219
               ||||||||||||||||||||
Sbjct: 1069048 tcgtctctcttctcttctct 1069029
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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 200     tcgtctctcttctcttctct 219
               ||||||||||||||||||||
Sbjct: 1045310 tcgtctctcttctcttctct 1045291
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>gb|AC154322.1| Mus musculus BAC clone RP23-299P17 from chromosome 14, complete sequence
          Length = 182146

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 205    tctcttctcttctctacttg 224
              ||||||||||||||||||||
Sbjct: 122252 tctcttctcttctctacttg 122233
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>dbj|AB121692.1| Mus musculus peptidylarginine deiminase gene cluster (Padi2, Padi1,
             Padi23, Padi4, Padi6), complete cds
          Length = 240498

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   tcgtctctcttctcttctct 219
             ||||||||||||||||||||
Sbjct: 37966 tcgtctctcttctcttctct 37985
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>gb|AC055863.16| Homo sapiens chromosome 17, clone RP11-478P5, complete sequence
          Length = 152348

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    cttcgtctctcttctcttct 217
              ||||||||||||||||||||
Sbjct: 118860 cttcgtctctcttctcttct 118879
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>gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I,
              complete sequence
          Length = 114738

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    tcttcgtctctcttctcttc 216
              ||||||||||||||||||||
Sbjct: 107501 tcttcgtctctcttctcttc 107520
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>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1136H02
          Length = 145086

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tctctcttctcttctctact 222
             ||||||||||||||||||||
Sbjct: 19415 tctctcttctcttctctact 19396
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0605D08
          Length = 144340

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    tctctcttctcttctctact 222
              ||||||||||||||||||||
Sbjct: 128943 tctctcttctcttctctact 128924
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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
              complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    aaaacaatcataaatcataa 135
              ||||||||||||||||||||
Sbjct: 226201 aaaacaatcataaatcataa 226220
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>emb|Z98200.9|HS111B22 Human DNA sequence from clone RP1-111B22 on chromosome 6q16-21 Contains a
              ribosomal protein L3 (RPL3) pseudogenee, the OSTM1 gene for
              osteopetrosis associated transmembrane, the 5' end of a
              novel gene and three CpG islands, complete sequence
          Length = 153382

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     caagtggacaacatacatctttat 62
              ||||| ||||||||||||||||||
Sbjct: 133939 caagttgacaacatacatctttat 133916
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>gb|AC154388.4| Mus musculus BAC clone RP23-14P7 from chromosome 14, complete sequence
          Length = 246800

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 196   ttcttcgtctctcttctcttctct 219
             |||||| |||||||||||||||||
Sbjct: 15949 ttcttcctctctcttctcttctct 15926
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>emb|AL732617.24| Mouse DNA sequence from clone RP23-196C23 on chromosome 4, complete
              sequence
          Length = 226501

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    cttcttcgtctctcttctct 214
              ||||||||||||||||||||
Sbjct: 196434 cttcttcgtctctcttctct 196415
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>emb|CT010520.15| Mouse DNA sequence from clone RP23-349A19 on chromosome 14, complete
             sequence
          Length = 175582

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   ttcttcgtctctcttctcttctct 219
             |||||| |||||||||||||||||
Sbjct: 37063 ttcttcctctctcttctcttctct 37086
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>emb|BX000438.7| Zebrafish DNA sequence from clone CH211-209M20 in linkage group 20,
             complete sequence
          Length = 195087

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   aaaacaatcataaatcataa 135
             ||||||||||||||||||||
Sbjct: 14808 aaaacaatcataaatcataa 14827
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>emb|AL645625.15| Mouse DNA sequence from clone RP23-183L1 on chromosome 4, complete
            sequence
          Length = 226754

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  tcgtctctcttctcttctct 219
            ||||||||||||||||||||
Sbjct: 6275 tcgtctctcttctcttctct 6256
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>emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on chromosome 15, complete
             sequence
          Length = 202342

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   tctctcttctcttctctact 222
             ||||||||||||||||||||
Sbjct: 34878 tctctcttctcttctctact 34897


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,147,046
Number of Sequences: 3902068
Number of extensions: 4147046
Number of successful extensions: 177687
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177077
Number of HSP's gapped (non-prelim): 610
length of query: 504
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 482
effective length of database: 17,147,199,772
effective search space: 8264950290104
effective search space used: 8264950290104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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