ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart12e06 |
|---|---|
| Clone Library Name | barley_pub |
>ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-)| Length = 458 Score = 58.9 bits (141), Expect = 5e-09 Identities = 31/46 (67%), Positives = 37/46 (80%) Frame = -1 Query: 434 PICNTKQGTCLAAKDSPLSVKAQRRTLAKPIGAFSGIAIDGKKSSA 297 PICN +QGTCL AKDSPL+VKA +RTLAKP +F + +GKKSSA Sbjct: 415 PICNVQQGTCLMAKDSPLAVKALKRTLAKPNLSF--LFGNGKKSSA 458
>CYSPL_LYCES (P20721) Low-temperature-induced cysteine proteinase precursor (EC| 3.4.22.-) (Fragment) Length = 346 Score = 55.5 bits (132), Expect = 6e-08 Identities = 27/46 (58%), Positives = 33/46 (71%) Frame = -1 Query: 434 PICNTKQGTCLAAKDSPLSVKAQRRTLAKPIGAFSGIAIDGKKSSA 297 PICN +QGTC +K +PL VKA +R LA+PIGAF GKKSS+ Sbjct: 304 PICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGN---GGKKSSS 346
>ORYB_ORYSA (P25777) Oryzain beta chain precursor (EC 3.4.22.-)| Length = 471 Score = 48.9 bits (115), Expect = 5e-06 Identities = 21/29 (72%), Positives = 26/29 (89%) Frame = -1 Query: 434 PICNTKQGTCLAAKDSPLSVKAQRRTLAK 348 P+CNT+ GTC A+K+SPLSVKA +RTLAK Sbjct: 433 PVCNTRAGTCSASKNSPLSVKALKRTLAK 461
>RD21A_ARATH (P43297) Cysteine proteinase RD21a precursor (EC 3.4.22.-) (RD21)| Length = 462 Score = 40.0 bits (92), Expect = 0.002 Identities = 17/30 (56%), Positives = 22/30 (73%) Frame = -1 Query: 434 PICNTKQGTCLAAKDSPLSVKAQRRTLAKP 345 P+C+ QGTCL +K+SP SVKA +R A P Sbjct: 423 PVCDLDQGTCLLSKNSPFSVKALKRKPATP 452
>AT1A1_OREMO (Q9YH26) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 30.8 bits (68), Expect = 1.5 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K +WWFC P +L Sbjct: 971 CPGMDVALRMYPMKPLWWFCAFPYSLL 997
>PO2F2_MOUSE (Q00196) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 462 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -3 Query: 333 LWHCN*RQEEQRVNICITAFVQPAAMVINFCK*SRGDPRSKAQH 202 +W CN RQ+E+R+N C A + P S G P S + H Sbjct: 326 VWFCNRRQKEKRINPCSAAPMLP----------SPGKPTSYSPH 359
>PO2F2_PIG (Q29013) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 478 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -3 Query: 333 LWHCN*RQEEQRVNICITAFVQPAAMVINFCK*SRGDPRSKAQH 202 +W CN RQ+E+R+N C A + P S G P S + H Sbjct: 343 VWFCNRRQKEKRINPCSAAPMLP----------SPGKPASYSPH 376
>PO2F2_HUMAN (P09086) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 478 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -3 Query: 333 LWHCN*RQEEQRVNICITAFVQPAAMVINFCK*SRGDPRSKAQH 202 +W CN RQ+E+R+N C A + P S G P S + H Sbjct: 342 VWFCNRRQKEKRINPCSAAPMLP----------SPGKPASYSPH 375
>XERC_MYXXA (P59818) Tyrosine recombinase xerC| Length = 300 Score = 28.9 bits (63), Expect = 5.7 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = -3 Query: 267 PAAMVINFCK*SRGDPRSKAQHGDSYALKYLLYNRCS 157 P AM +NF + R PRS A+H D+Y LK L + S Sbjct: 209 PEAMFLNF-RGGRLTPRSIARHLDTYVLKCALTRKVS 244
>ZNF42_HUMAN (P28698) Zinc finger protein 42 (Myeloid zinc finger 1) (MZF-1)| (Zinc finger and SCAN domain-containing protein 6) Length = 734 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 7/51 (13%) Frame = +2 Query: 299 RCSSCRQLQCQRKHL*AW-------PGYASEPSLTVGCPWPRGTFPAWCCR 430 RC+ C Q QR +L PG ++P G P P G FP CR Sbjct: 441 RCAECGQSFRQRSNLLQHQRIHGDPPGPGAKPPAPPGAPEPPGPFPCSECR 491
>AT1A1_RAT (P06685) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 971 CPGMGAALRMYPLKPTWWFCAFPYSLL 997
>AT1A1_MOUSE (Q8VDN2) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 971 CPGMGAALRMYPLKPTWWFCAFPYSLL 997
>AT1A1_HUMAN (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 971 CPGMGVALRMYPLKPTWWFCAFPYSLL 997
>AT1A1_BUFMA (P30714) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 971 CPGMDVALRMYPLKPTWWFCAFPYSLL 997
>ARNT_SHIFL (Q83KB6) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) Length = 550 Score = 28.9 bits (63), Expect = 5.7 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Frame = +1 Query: 4 TAICLSCFLMNSIITMAAPN-------CVGMS*VLHIHMQKQIWWFCKRPNPILGLCTGA 162 T I LS F++ +I T A + GM + MQ Q W +LG+ G Sbjct: 116 TVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMC-SFWLAMQAQTWKGKSAGFLLLGITCGM 174 Query: 163 SIIKKIFESIAIAMLRLRSWITT 231 ++ K F ++A+ +L + W+ T Sbjct: 175 GVMTKGFLALAVPVLSVLPWVAT 197
>ARNT_ECOLI (P76473) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) (Polymyxin resistance protein pmrK) Length = 550 Score = 28.9 bits (63), Expect = 5.7 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Frame = +1 Query: 4 TAICLSCFLMNSIITMAAPN-------CVGMS*VLHIHMQKQIWWFCKRPNPILGLCTGA 162 T I LS F++ +I T A + GM + MQ Q W +LG+ G Sbjct: 116 TVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMC-SFWLAMQAQTWKGKSAGFLLLGITCGM 174 Query: 163 SIIKKIFESIAIAMLRLRSWITT 231 ++ K F ++A+ +L + W+ T Sbjct: 175 GVMTKGFLALAVPVLSVLPWVAT 197
>ARNT_ECOL6 (Q8FFL9) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) Length = 550 Score = 28.9 bits (63), Expect = 5.7 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Frame = +1 Query: 4 TAICLSCFLMNSIITMAAPN-------CVGMS*VLHIHMQKQIWWFCKRPNPILGLCTGA 162 T I LS F++ +I T A + GM + MQ Q W +LG+ G Sbjct: 116 TVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMC-SFWLAMQAQTWKGKSAGFLLLGITCGM 174 Query: 163 SIIKKIFESIAIAMLRLRSWITT 231 ++ K F ++A+ +L + W+ T Sbjct: 175 GVMTKGFLALAVPVLSVLPWVAT 197
>ARNT_ECO57 (Q8XDZ1) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose| arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl phosphate-alpha-L-Ara4N transferase) (4-amino-4-deoxy-L-arabinose lipid A transferase) Length = 550 Score = 28.9 bits (63), Expect = 5.7 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%) Frame = +1 Query: 4 TAICLSCFLMNSIITMAAPN-------CVGMS*VLHIHMQKQIWWFCKRPNPILGLCTGA 162 T I LS F++ +I T A + GM + MQ Q W +LG+ G Sbjct: 116 TVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMC-SFWLAMQAQTWKGKSAGFLLLGITCGM 174 Query: 163 SIIKKIFESIAIAMLRLRSWITT 231 ++ K F ++A+ +L + W+ T Sbjct: 175 GVMTKGFLALAVPVLSVLPWVAT 197
>AT1A1_SHEEP (P04074) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_PIG (P05024) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_HORSE (P18907) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_CHICK (P09572) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 969 CPGMDVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_CANFA (P50997) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A2_RAT (P06686) Sodium/potassium-transporting ATPase alpha-2 chain precursor| (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) (Alpha(+)) Length = 1020 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 968 CPGMGVALRMYPLKVTWWFCAFPYSLL 994
>AT1A2_MOUSE (Q6PIE5) Sodium/potassium-transporting ATPase alpha-2 chain precursor| (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) (Alpha(+)) Length = 1020 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 968 CPGMGVALRMYPLKVTWWFCAFPYSLL 994
>AT1A2_HUMAN (P50993) Sodium/potassium-transporting ATPase alpha-2 chain precursor| (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) Length = 1020 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 968 CPGMGVALRMYPLKVTWWFCAFPYSLL 994
>AT1A1_ANGAN (Q92030) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1022 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 970 CPGMDVALRMYPLKPSWWFCAFPYSLL 996
>AT1A2_CHICK (P24797) Sodium/potassium-transporting ATPase alpha-2 chain (EC| 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) Length = 1017 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 965 CPGMGVALRMYPLKVTWWFCAFPYSLL 991
>AT1A1_XENLA (Q92123) Sodium/potassium-transporting ATPase alpha-1 chain (EC| 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1025 Score = 28.1 bits (61), Expect = 9.7 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P ++ Sbjct: 973 CPGMDVALRMYPLKPTWWFCAFPYSLI 999
>AT1A1_CATCO (P25489) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1027 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 64 CVGMS*VLHIHMQKQIWWFCKRPNPIL 144 C GM L ++ K WWFC P +L Sbjct: 975 CPGMDVALRMYPLKPNWWFCAFPYSLL 1001
>SOMA_PANTR (P58756) Somatotropin precursor (Growth hormone) (GH) (GH-N)| (Pituitary growth hormone) (Growth hormone 1) Length = 217 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Frame = +1 Query: 133 NPILGLCTGASII----------KKIFESIAIAMLRLRSWITT*SFAEVNHHGRWLYECR 282 NP LC SI K E + I++L ++SW+ F +Y Sbjct: 73 NPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGAS 132 Query: 283 DANVYALL 306 D+NVY LL Sbjct: 133 DSNVYDLL 140
>SOMA_HUMAN (P01241) Somatotropin precursor (Growth hormone) (GH) (GH-N)| (Pituitary growth hormone) (Growth hormone 1) Length = 217 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Frame = +1 Query: 133 NPILGLCTGASII----------KKIFESIAIAMLRLRSWITT*SFAEVNHHGRWLYECR 282 NP LC SI K E + I++L ++SW+ F +Y Sbjct: 73 NPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGAS 132 Query: 283 DANVYALL 306 D+NVY LL Sbjct: 133 DSNVYDLL 140
>CYSP1_ORYSA (Q7XR52) Cysteine protease 1 precursor (EC 3.4.22.-) (OsCP1)| Length = 490 Score = 28.1 bits (61), Expect = 9.7 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -1 Query: 434 PICNTKQGTCLAAKDSPLSVK 372 P+CN K TC +K+SP +++ Sbjct: 443 PVCNAKARTCSKSKNSPYNIR 463 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,236,670 Number of Sequences: 219361 Number of extensions: 1282976 Number of successful extensions: 3248 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3248 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
