ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contai... 31 0.70
2COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Coll... 30 2.0
3VST1_HEVME (Q03499) Structural protein 1 30 2.0
4LPXK_BORPE (Q7VVB2) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 28 6.0
5LPXK_BORPA (Q7W7F7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 28 6.0
6LPXK_BORBR (Q7WKU5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13... 28 6.0
7LRC15_MOUSE (Q80X72) Leucine-rich repeat-containing protein 15 p... 28 7.8
8CBIO1_SPIKU (Q6XYZ4) Cobalt import ATP-binding protein cbiO 1 28 7.8
9VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contai... 28 7.8
10WFD12_MOUSE (Q9JHY3) WAP four-disulfide core domain protein 12 p... 28 7.8

>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
 Frame = -2

Query: 276  PVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGDHVMC----C*CLTGNET 109
            P +C+    C      C ++  P C        P    P       C    C C   N T
Sbjct: 2351 PGECRPTFTCDCRKEECKRVSPPSC--------PPHRTPTLRKTQCCDEYECACSCVNST 2402

Query: 108  PSCPLGTFCCANSFSCQC 55
             SCPLG    A +  C C
Sbjct: 2403 LSCPLGYLASATTNDCGC 2420



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>COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Collagen alpha-1(Y)|
           chain)
          Length = 1142

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 46  LIVTLTAETISTTKCPQRTGWGLVSSQTSAAH 141
           LI   T   IS TKCP++ G+G ++S    AH
Sbjct: 236 LIAQETCCEISDTKCPEQDGFGNIASSWVTAH 267



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>VST1_HEVME (Q03499) Structural protein 1|
          Length = 123

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 111 TPSCPLGTFCCANSFSCQC 55
           +P C LG FCC +S  C C
Sbjct: 12  SPPCALGLFCCCSSCFCLC 30



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>LPXK_BORPE (Q7VVB2) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 347

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 294 ASLPFLPVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGD 148
           A  PF  +    +LV   D  +CA L+ P+ W   +G      DP  GD
Sbjct: 290 AQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDPDFGD 336



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>LPXK_BORPA (Q7W7F7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 347

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 294 ASLPFLPVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGD 148
           A  PF  +    +LV   D  +CA L+ P+ W   +G      DP  GD
Sbjct: 290 AQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDPDFGD 336



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>LPXK_BORBR (Q7WKU5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 347

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 294 ASLPFLPVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGD 148
           A  PF  +    +LV   D  +CA L+ P+ W   +G      DP  GD
Sbjct: 290 AQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDPDFGD 336



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>LRC15_MOUSE (Q80X72) Leucine-rich repeat-containing protein 15 precursor|
          Length = 579

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -1

Query: 283 LPACQVSTSFSMYVGFPSLCPA*AAPVLEVEYR*IPCFPRPRPWGSCHVLLM 128
           L +CQ   +   Y G PS C    A  +E     I   P P PW +  + ++
Sbjct: 10  LVSCQAWAAGLAYYGCPSECTCSRASQVECTGAQIVAMPSPLPWNAMSLQIL 61



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>CBIO1_SPIKU (Q6XYZ4) Cobalt import ATP-binding protein cbiO 1|
          Length = 288

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 86  NVPNGQDGVSFPVKHQQHMT*SPGAGSRKA 175
           N PN  DGVSF + H +++T     GS K+
Sbjct: 32  NHPNAVDGVSFEINHGEYVTIIGHNGSGKS 61



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>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/74 (25%), Positives = 25/74 (33%)
 Frame = -2

Query: 276  PVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGDHVMCC*CLTGNETPSCP 97
            P +C+    C      C ++  P C      + P        D   C  C   N T SCP
Sbjct: 2351 PGECRPNFTCACRKEECKRVSPPSC---PPHRLPTLRKTQCCDEYECA-CNCVNSTVSCP 2406

Query: 96   LGTFCCANSFSCQC 55
            LG      +  C C
Sbjct: 2407 LGYLASTATNDCGC 2420



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>WFD12_MOUSE (Q9JHY3) WAP four-disulfide core domain protein 12 precursor (Whey|
           acidic protein 2) (Single WAP motif protein 2)
           (Elafin-like protein II)
          Length = 85

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 273 VKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGDHVMCC 133
           VK +   VC  D+ RC + + PQC          + D   GD  +CC
Sbjct: 24  VKGEEKRVCPPDYVRCIRQDDPQC----------YSDNDCGDQEICC 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,678,297
Number of Sequences: 219361
Number of extensions: 866149
Number of successful extensions: 1705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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