Clone Name | rbart12e02 |
---|---|
Clone Library Name | barley_pub |
>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 31.2 bits (69), Expect = 0.70 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 4/78 (5%) Frame = -2 Query: 276 PVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGDHVMC----C*CLTGNET 109 P +C+ C C ++ P C P P C C C N T Sbjct: 2351 PGECRPTFTCDCRKEECKRVSPPSC--------PPHRTPTLRKTQCCDEYECACSCVNST 2402 Query: 108 PSCPLGTFCCANSFSCQC 55 SCPLG A + C C Sbjct: 2403 LSCPLGYLASATTNDCGC 2420
>COJA1_HUMAN (Q14993) Collagen alpha-1(XIX) chain precursor (Collagen alpha-1(Y)| chain) Length = 1142 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 46 LIVTLTAETISTTKCPQRTGWGLVSSQTSAAH 141 LI T IS TKCP++ G+G ++S AH Sbjct: 236 LIAQETCCEISDTKCPEQDGFGNIASSWVTAH 267
>VST1_HEVME (Q03499) Structural protein 1| Length = 123 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 111 TPSCPLGTFCCANSFSCQC 55 +P C LG FCC +S C C Sbjct: 12 SPPCALGLFCCCSSCFCLC 30
>LPXK_BORPE (Q7VVB2) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -2 Query: 294 ASLPFLPVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGD 148 A PF + +LV D +CA L+ P+ W +G DP GD Sbjct: 290 AQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDPDFGD 336
>LPXK_BORPA (Q7W7F7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -2 Query: 294 ASLPFLPVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGD 148 A PF + +LV D +CA L+ P+ W +G DP GD Sbjct: 290 AQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDPDFGD 336
>LPXK_BORBR (Q7WKU5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -2 Query: 294 ASLPFLPVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGD 148 A PF + +LV D +CA L+ P+ W +G DP GD Sbjct: 290 AQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDPDFGD 336
>LRC15_MOUSE (Q80X72) Leucine-rich repeat-containing protein 15 precursor| Length = 579 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = -1 Query: 283 LPACQVSTSFSMYVGFPSLCPA*AAPVLEVEYR*IPCFPRPRPWGSCHVLLM 128 L +CQ + Y G PS C A +E I P P PW + + ++ Sbjct: 10 LVSCQAWAAGLAYYGCPSECTCSRASQVECTGAQIVAMPSPLPWNAMSLQIL 61
>CBIO1_SPIKU (Q6XYZ4) Cobalt import ATP-binding protein cbiO 1| Length = 288 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 86 NVPNGQDGVSFPVKHQQHMT*SPGAGSRKA 175 N PN DGVSF + H +++T GS K+ Sbjct: 32 NHPNAVDGVSFEINHGEYVTIIGHNGSGKS 61
>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/74 (25%), Positives = 25/74 (33%) Frame = -2 Query: 276 PVKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGDHVMCC*CLTGNETPSCP 97 P +C+ C C ++ P C + P D C C N T SCP Sbjct: 2351 PGECRPNFTCACRKEECKRVSPPSC---PPHRLPTLRKTQCCDEYECA-CNCVNSTVSCP 2406 Query: 96 LGTFCCANSFSCQC 55 LG + C C Sbjct: 2407 LGYLASTATNDCGC 2420
>WFD12_MOUSE (Q9JHY3) WAP four-disulfide core domain protein 12 precursor (Whey| acidic protein 2) (Single WAP motif protein 2) (Elafin-like protein II) Length = 85 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = -2 Query: 273 VKCQRVLVCM*DFRRCAQLEQPQCWR*NIGKYPAFLDPAPGDHVMCC 133 VK + VC D+ RC + + PQC + D GD +CC Sbjct: 24 VKGEEKRVCPPDYVRCIRQDDPQC----------YSDNDCGDQEICC 60 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,678,297 Number of Sequences: 219361 Number of extensions: 866149 Number of successful extensions: 1705 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1705 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)