>MYSN_ACACA (P05659) Myosin-2 heavy chain, non muscle (Myosin II heavy chain, non|
            muscle)
          Length = 1509

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = -2

Query: 532  RSSIELEKKGYAESYEQGQEMQKKLVSVASEVEKLRAEVANAEKRSRVA 386
            R+ +E EK G   +  + +++ ++L    SEV+ L+++++ AEK  + A
Sbjct: 1072 RAQLEEEKSGKEAASSKAKQLGQQLEDARSEVDSLKSKLSAAEKSLKTA 1120

>MUTS2_AQUAE (O67287) MutS2 protein|
          Length = 762

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 508 KGYAESYEQGQEMQKKLVSVASEVEKLRAEVANAEKR 398
           K Y E + + +E++K+L     EVEKLR E   A+++
Sbjct: 525 KKYEEEFRKLEELRKELQKEKEEVEKLRKEYEEAKRK 561



 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 520 ELEKKGYAESYEQGQEMQKKLVSVASEVEKLRAE 419
           E ++KG+ E+Y++ +E  +KLV  + E+ K   E
Sbjct: 557 EAKRKGWKEAYKEAREYLRKLVQESEEIFKKAKE 590

>RPOC1_PROSC (P42078) DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (RNAP|
           gamma subunit) (Transcriptase gamma chain) (RNA
           polymerase gamma subunit) (Fragment)
          Length = 203

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
 Frame = -2

Query: 523 IELEKKGYAESYEQ-------GQEMQKKL---VSVASEVEKLRAEVANAEKRSR 392
           +E+E++ Y E  E        G E  K+L   V   SE EKLR+E+AN + + R
Sbjct: 131 LEIEEQIYGEDSELLGIEVGIGAEAVKRLLEEVDKTSEAEKLRSEIANCKGQKR 184

>HIPPO_DROME (Q8T0S6) Serine/threonine-protein kinase hippo (EC 2.7.11.1)|
          Length = 669

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +1

Query: 343 DFHSFQHNLDCLQIQQLVISSQH*QPQHEVSPLQKQLKPISSASLVPAHNSLHILSSQA 519
           D ++++HN++ +Q QQ+   +Q+   QH+         P+ +  L+  +N  ++L S A
Sbjct: 514 DLNNWEHNME-MQFQQISAINQYGLQQHQQQQQVLMAYPLMNEQLIALNNQPNLLLSNA 571

>RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
           protein homolog)
          Length = 2095

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 337 H*DFHSFQHNLDCLQIQQLVISSQH*QPQHEVSPLQKQLKPISSASLVPAHNSLHIL 507
           H +  S  H  + L+  Q V+     +P  +V  + + LK ++  SLVP  N LHI+
Sbjct: 796 HLEKQSLFHVFNILEEDQKVLH----RPPFQVEKVARNLKGMAKKSLVPKVNDLHIM 848

>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle|
          Length = 1938

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = -2

Query: 541  QHLRSSIELEKKGYAESYEQGQEMQKKLVSVASEVEKLRAEVANAEKRSRVA 386
            + +++SIE E++   E+ E     +++   ++ EVE+LRA +  AE+  + +
Sbjct: 1648 REMQTSIEEEQRQRDEARESYNMAERRCTLMSGEVEELRAALEQAERARKAS 1699

>TSC1_RAT (Q9Z136) Hamartin (Tuberous sclerosis 1 protein homolog)|
          Length = 1163

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 535 LRSSIELEKKGYAESYEQGQEMQKKLVSVASEVEKLRAEVANAEKR 398
           L S I   +    E Y Q QE+Q KL    S + +LR E+  A  +
Sbjct: 775 LHSQIRQLQHDREEFYNQSQELQTKLEDCRSMIAELRVELKKANSK 820

>TRUA_BUCAP (Q8K9U4) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 263

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 502 YAESYEQGQEMQKKLVSVASEVEKLRAEVAN 410
           Y  SY  G + QK L ++ SE+EK  +++AN
Sbjct: 15  YDGSYYHGWQSQKGLSTIQSEIEKALSKIAN 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,264,223
Number of Sequences: 219361
Number of extensions: 1230659
Number of successful extensions: 4021
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4021
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)