ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12e01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478321.1| Oryza sativa (japonica cultivar-group), mRNA 170 3e-39
2dbj|AK069914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 3e-39
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
4dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
5gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-8... 46 0.12
6gb|BT014155.1| Lycopersicon esculentum clone 133275R, mRNA sequence 44 0.47
7emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in... 44 0.47
8gb|AF459411.1| Narcissus pseudonarcissus DAFSAG16 senescence-ass... 44 0.47
9emb|AL929578.4| Zebrafish DNA sequence from clone CH211-189L6, c... 44 0.47
10ref|XM_638802.1| Dictyostelium discoideum catalase (DDB0185123),... 42 1.9
11gb|AC161205.3| Mus musculus chromosome 7, clone RP23-53C15, comp... 42 1.9
12gb|AC087420.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 42 1.9
13emb|CR354558.20| Zebrafish DNA sequence from clone CH211-12A23 i... 42 1.9
14emb|CR533575.5| Zebrafish DNA sequence from clone CH211-215M13 i... 42 1.9
15emb|BX890572.9| Zebrafish DNA sequence from clone CH211-234F20 i... 42 1.9
16emb|CR457453.7| Zebrafish DNA sequence from clone CH211-76I17 in... 42 1.9
17gb|AC113298.14| Mus musculus chromosome 7, clone RP23-428N8, com... 42 1.9
18emb|BX322647.12| Zebrafish DNA sequence from clone DKEYP-86F8 in... 42 1.9
19gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete s... 42 1.9
20emb|BX470244.6| Zebrafish DNA sequence from clone CH211-8G12 in ... 42 1.9
21gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Can... 42 1.9
22gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 42 1.9
23dbj|AK173192.1| Mus musculus mRNA for mKIAA1528 protein 42 1.9
24gb|AF090443.1|AF090443 Dictyostelium discoideum catalase (cat) m... 42 1.9
25emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chro... 42 1.9
26gb|AY763518.1| Homo sapiens interleukin 21 (IL21) gene, complete... 40 7.3
27gb|AC108433.9| Mus musculus chromosome 18, clone RP23-194M19, co... 40 7.3
28gb|AC124107.8| Mus musculus chromosome 5, clone RP24-317M4, comp... 40 7.3
29ref|XM_429825.1| PREDICTED: Gallus gallus LOC421235 (LOC421235),... 40 7.3
30gb|AC145996.3| Pan troglodytes BAC clone RP43-17D11 from 7, comp... 40 7.3
31emb|CR293499.22| Zebrafish DNA sequence from clone CH211-106H12 ... 40 7.3
32gb|AC112144.4| Mus musculus BAC clone RP23-32B4 from 19, complet... 40 7.3
33gb|AC158912.3| Mus musculus chromosome 5, clone RP23-131C17, com... 40 7.3
34emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 40 7.3
35emb|AJ489252.1|ECH489252 Erwinia chrysanthemi phoP gene and phoQ... 40 7.3
36gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome... 40 7.3
37emb|AJ811729.1| Corallococcus coralloides partial gyrB gene for ... 40 7.3
38gb|AC117383.4| Homo sapiens 3 BAC RP11-789L4 (Roswell Park Cance... 40 7.3
39gb|AC053545.5| Homo sapiens BAC clone RP11-804C24 from 4, comple... 40 7.3
40gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 1... 40 7.3
41emb|BX465227.3| Zebrafish DNA sequence from clone RP71-40K24 in ... 40 7.3
42gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, comple... 40 7.3
43gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome... 40 7.3
44gb|AC022215.4|AC022215 Homo sapiens BAC clone RP11-764I5 from 3,... 40 7.3
45emb|BX571957.10| Zebrafish DNA sequence from clone DKEYP-117B4 i... 40 7.3
46emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in ... 40 7.3
47dbj|AK101679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.3
48emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in ... 40 7.3
49emb|BX957315.10| Zebrafish DNA sequence from clone CH211-254E15 ... 40 7.3
50gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 7.3
51emb|AL731548.13| Mouse DNA sequence from clone RP23-71M18 on chr... 40 7.3
52emb|CR394538.6| Zebrafish DNA sequence from clone DKEY-189I22 in... 40 7.3
53gb|AF001958.1|AF001958 Ambystoma tigrinum electrogenic Na+ bicar... 40 7.3 
>ref|XM_478321.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1350

 Score =  170 bits (86), Expect = 3e-39
 Identities = 196/234 (83%), Gaps = 9/234 (3%)
 Strand = Plus / Minus

                                                                        
Query: 290  ttgattcatgctgtatccaacattgtaaggatttgcagcataattggcattaggatttcc 349
            |||||| ||| |||||||| |||| ||||||||||| |||||   ||| |||||||| ||
Sbjct: 1032 ttgatttatgttgtatccagcattataaggatttgcggcatatgcggccttaggattccc 973

                                                                        
Query: 350  atagcttccagcataaccttgattgcctgcagatacagcaactcgtgatctcttctcagc 409
            ||||| |||  | ||  ||||||||||| |||| |||||| ||||||| |||||||| ||
Sbjct: 972  atagcctccgacgtacacttgattgcctccagacacagcagctcgtgacctcttctcggc 913

                                                                        
Query: 410  attagcaacctcagcacgaagtttctccacttcagaagcaactgaaaccaatttcttctg 469
                     |||||| ||||| ||||||||||||||||| ||||| | ||||||||||||
Sbjct: 912  ---------ctcagctcgaagcttctccacttcagaagccactgatatcaatttcttctg 862

                                                                  
Query: 470  catctcttgtccctgctcataactctctgcatatcctttcttctcaagctcaat 523
            ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 861  catctcttgtccctgctcatagctctcggcatatcctttcttctcaacctcaat 808



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 194  tcatctccgtcctggagctctttgcatgtcataggcgccccagg 237
            |||||||||||| | |||||| |||||||||||||| |||||||
Sbjct: 1140 tcatctccgtccagtagctctctgcatgtcataggcaccccagg 1097
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>dbj|AK069914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039M07, full
            insert sequence
          Length = 1350

 Score =  170 bits (86), Expect = 3e-39
 Identities = 196/234 (83%), Gaps = 9/234 (3%)
 Strand = Plus / Minus

                                                                        
Query: 290  ttgattcatgctgtatccaacattgtaaggatttgcagcataattggcattaggatttcc 349
            |||||| ||| |||||||| |||| ||||||||||| |||||   ||| |||||||| ||
Sbjct: 1032 ttgatttatgttgtatccagcattataaggatttgcggcatatgcggccttaggattccc 973

                                                                        
Query: 350  atagcttccagcataaccttgattgcctgcagatacagcaactcgtgatctcttctcagc 409
            ||||| |||  | ||  ||||||||||| |||| |||||| ||||||| |||||||| ||
Sbjct: 972  atagcctccgacgtacacttgattgcctccagacacagcagctcgtgacctcttctcggc 913

                                                                        
Query: 410  attagcaacctcagcacgaagtttctccacttcagaagcaactgaaaccaatttcttctg 469
                     |||||| ||||| ||||||||||||||||| ||||| | ||||||||||||
Sbjct: 912  ---------ctcagctcgaagcttctccacttcagaagccactgatatcaatttcttctg 862

                                                                  
Query: 470  catctcttgtccctgctcataactctctgcatatcctttcttctcaagctcaat 523
            ||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 861  catctcttgtccctgctcatagctctcggcatatcctttcttctcaacctcaat 808



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 194  tcatctccgtcctggagctctttgcatgtcataggcgccccagg 237
            |||||||||||| | |||||| |||||||||||||| |||||||
Sbjct: 1140 tcatctccgtccagtagctctctgcatgtcataggcaccccagg 1097
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  149 bits (75), Expect = 1e-32
 Identities = 137/159 (86%), Gaps = 9/159 (5%)
 Strand = Plus / Minus

                                                                            
Query: 365      accttgattgcctgcagatacagcaactcgtgatctcttctcagcattagcaacctcagc 424
                ||||||||||||| |||| |||||| ||||||| |||||||| ||         ||||||
Sbjct: 19255209 accttgattgcctccagacacagcagctcgtgacctcttctcggc---------ctcagc 19255159

                                                                            
Query: 425      acgaagtttctccacttcagaagcaactgaaaccaatttcttctgcatctcttgtccctg 484
                 ||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 19255158 tcgaagcttctccacttcagaagccactgatatcaatttcttctgcatctcttgtccctg 19255099

                                                       
Query: 485      ctcataactctctgcatatcctttcttctcaagctcaat 523
                |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 19255098 ctcatagctctcggcatatcctttcttctcaacctcaat 19255060



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 194      tcatctccgtcctggagctctttgcatgtcataggcgccccagg 237
                |||||||||||| | |||||| |||||||||||||| |||||||
Sbjct: 19255679 tcatctccgtccagtagctctctgcatgtcataggcaccccagg 19255636



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                            
Query: 287      tacttgattcatgctgtatccaacattgtaaggatttgcagcataattggcattaggatt 346
                ||||||||| ||| |||||||| |||| ||||||||||| |||||   ||| ||||||||
Sbjct: 19255499 tacttgatttatgttgtatccagcattataaggatttgcggcatatgcggccttaggatt 19255440

                        
Query: 347      tccatagc 354
                 |||||||
Sbjct: 19255439 cccatagc 19255432
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>dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1163_G04
          Length = 106253

 Score =  149 bits (75), Expect = 1e-32
 Identities = 137/159 (86%), Gaps = 9/159 (5%)
 Strand = Plus / Minus

                                                                         
Query: 365   accttgattgcctgcagatacagcaactcgtgatctcttctcagcattagcaacctcagc 424
             ||||||||||||| |||| |||||| ||||||| |||||||| ||         ||||||
Sbjct: 31435 accttgattgcctccagacacagcagctcgtgacctcttctcggc---------ctcagc 31385

                                                                         
Query: 425   acgaagtttctccacttcagaagcaactgaaaccaatttcttctgcatctcttgtccctg 484
              ||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 31384 tcgaagcttctccacttcagaagccactgatatcaatttcttctgcatctcttgtccctg 31325

                                                    
Query: 485   ctcataactctctgcatatcctttcttctcaagctcaat 523
             |||||| ||||| ||||||||||||||||||| ||||||
Sbjct: 31324 ctcatagctctcggcatatcctttcttctcaacctcaat 31286



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 194   tcatctccgtcctggagctctttgcatgtcataggcgccccagg 237
             |||||||||||| | |||||| |||||||||||||| |||||||
Sbjct: 31905 tcatctccgtccagtagctctctgcatgtcataggcaccccagg 31862



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                         
Query: 287   tacttgattcatgctgtatccaacattgtaaggatttgcagcataattggcattaggatt 346
             ||||||||| ||| |||||||| |||| ||||||||||| |||||   ||| ||||||||
Sbjct: 31725 tacttgatttatgttgtatccagcattataaggatttgcggcatatgcggccttaggatt 31666

                     
Query: 347   tccatagc 354
              |||||||
Sbjct: 31665 cccatagc 31658
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>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete sequence
          Length = 132817

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 412    tagcaacctcagcacgaagtttctccacttc 442
              |||||| |||||||||||||||||| |||||
Sbjct: 116983 tagcaagctcagcacgaagtttctcaacttc 116953
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>gb|BT014155.1| Lycopersicon esculentum clone 133275R, mRNA sequence
          Length = 1479

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 408 gcattagcaacctcagcacgaagttt 433
           ||||||||||||||||| ||||||||
Sbjct: 865 gcattagcaacctcagctcgaagttt 840
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>emb|CR356239.11| Zebrafish DNA sequence from clone DKEY-147F3 in linkage group 23,
              complete sequence
          Length = 110120

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 309    acattgtaaggatttgcagcat 330
              ||||||||||||||||||||||
Sbjct: 107199 acattgtaaggatttgcagcat 107178
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>gb|AF459411.1| Narcissus pseudonarcissus DAFSAG16 senescence-associated putative
           protein mRNA, partial cds
          Length = 385

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 100/126 (79%)
 Strand = Plus / Minus

                                                                       
Query: 399 ctcttctcagcattagcaacctcagcacgaagtttctccacttcagaagcaactgaaacc 458
           |||||||||||||| |||||||| || || || |||||||| |||  ||| |  ||||| 
Sbjct: 143 ctcttctcagcatttgcaacctctgctcgtagcttctccacctcacgagccatggaaact 84

                                                                       
Query: 459 aatttcttctgcatctcttgtccctgctcataactctctgcatatcctttcttctcaagc 518
           |  ||||| | |||| |||| || ||||||||  |||| || || || |||||||||| |
Sbjct: 83  agattcttttccatcacttgaccttgctcatagttctcagcgtaacccttcttctcaaac 24

                 
Query: 519 tcaata 524
           ||||||
Sbjct: 23  tcaata 18
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>emb|AL929578.4| Zebrafish DNA sequence from clone CH211-189L6, complete sequence
          Length = 142570

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 309   acattgtaaggatttgcagcat 330
             ||||||||||||||||||||||
Sbjct: 62110 acattgtaaggatttgcagcat 62089
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>ref|XM_638802.1| Dictyostelium discoideum catalase (DDB0185123), partial mRNA
          Length = 1491

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 379 cagatacagcaactcgtgatctctt 403
           ||||| |||||||||||||||||||
Sbjct: 713 cagattcagcaactcgtgatctctt 737
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>gb|AC161205.3| Mus musculus chromosome 7, clone RP23-53C15, complete sequence
          Length = 244671

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    aggtcaacaaatacacaaggc 73
             |||||||||||||||||||||
Sbjct: 24832 aggtcaacaaatacacaaggc 24852
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>gb|AC087420.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-314O1, complete
             sequence
          Length = 232462

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 461   tttcttctgcatctcttgtccctgc 485
             ||||||||||||||||| |||||||
Sbjct: 72878 tttcttctgcatctcttctccctgc 72902
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>emb|CR354558.20| Zebrafish DNA sequence from clone CH211-12A23 in linkage group 8,
             complete sequence
          Length = 177206

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 310   cattgtaaggatttgcagcat 330
             |||||||||||||||||||||
Sbjct: 20029 cattgtaaggatttgcagcat 20049
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>emb|CR533575.5| Zebrafish DNA sequence from clone CH211-215M13 in linkage group 16,
             complete sequence
          Length = 115032

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 310   cattgtaaggatttgcagcat 330
             |||||||||||||||||||||
Sbjct: 24182 cattgtaaggatttgcagcat 24202
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>emb|BX890572.9| Zebrafish DNA sequence from clone CH211-234F20 in linkage group 4
             Contains the gene for a novel protein containing two notch
             (DSL) domains and an EF hand domain, the gene for a novel
             protein similar to vertebrate myosin binding protein H
             (MYBPH), the gene for a novel protein sinilar to human and
             mouse CWF19-like 1, cell cycle control (S. pombe)
             (CWF19L1), the gene for a novel protein (zgc:55718), the
             gene for a novel protein containing Kelch motifs and a
             BTB/POZ domain, the sycp3 gene for synaptonemal complex
             protein 3, a novel gene and a CpG island, complete
             sequence
          Length = 166208

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 383   tacagcaactcgtgatctcttctca 407
             |||||||||||||| ||||||||||
Sbjct: 70337 tacagcaactcgtgttctcttctca 70361
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>emb|CR457453.7| Zebrafish DNA sequence from clone CH211-76I17 in linkage group 14,
              complete sequence
          Length = 171899

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 310    cattgtaaggatttgcagcat 330
              |||||||||||||||||||||
Sbjct: 167579 cattgtaaggatttgcagcat 167559
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>gb|AC113298.14| Mus musculus chromosome 7, clone RP23-428N8, complete sequence
          Length = 181555

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    aggtcaacaaatacacaaggc 73
             |||||||||||||||||||||
Sbjct: 78686 aggtcaacaaatacacaaggc 78666
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>emb|BX322647.12| Zebrafish DNA sequence from clone DKEYP-86F8 in linkage group 1, complete
              sequence
          Length = 216540

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 309    acattgtaaggatttgcagca 329
              |||||||||||||||||||||
Sbjct: 148565 acattgtaaggatttgcagca 148585
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>gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete sequence
          Length = 120437

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 402   ttctcagcattagcaacctcagcacgaagtttctcca 438
             ||||| ||||| |||| ||| ||||||||||||||||
Sbjct: 80847 ttctctgcatttgcaatctctgcacgaagtttctcca 80811
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>emb|BX470244.6| Zebrafish DNA sequence from clone CH211-8G12 in linkage group 21,
            complete sequence
          Length = 200867

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 310  cattgtaaggatttgcagcat 330
            |||||||||||||||||||||
Sbjct: 8155 cattgtaaggatttgcagcat 8175
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>gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 130479

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 99    ttgcacagaaatagaaattcagttt 123
             |||||||||||||||| ||||||||
Sbjct: 82364 ttgcacagaaatagaagttcagttt 82388
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>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 379    cagatacagcaactcgtgatctctt 403
              ||||| |||||||||||||||||||
Sbjct: 278804 cagattcagcaactcgtgatctctt 278780
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>dbj|AK173192.1| Mus musculus mRNA for mKIAA1528 protein
          Length = 5420

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 461  tttcttctgcatctcttgtccctgc 485
            ||||||||||||||||| |||||||
Sbjct: 2532 tttcttctgcatctcttctccctgc 2556
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>gb|AF090443.1|AF090443 Dictyostelium discoideum catalase (cat) mRNA, complete cds
          Length = 1566

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 379 cagatacagcaactcgtgatctctt 403
           ||||| |||||||||||||||||||
Sbjct: 724 cagattcagcaactcgtgatctctt 748
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>emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chromosome 4, complete
              sequence
          Length = 197080

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    gatttaagaagaaaaaggagg 183
              |||||||||||||||||||||
Sbjct: 173601 gatttaagaagaaaaaggagg 173581
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>gb|AY763518.1| Homo sapiens interleukin 21 (IL21) gene, complete cds
          Length = 11575

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 461 tttcttctgcatctcttgtccctg 484
           |||||||||| |||||||||||||
Sbjct: 922 tttcttctgcttctcttgtccctg 899
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>gb|AC108433.9| Mus musculus chromosome 18, clone RP23-194M19, complete sequence
          Length = 188997

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   ctctctgcatatcctttctt 511
             ||||||||||||||||||||
Sbjct: 28200 ctctctgcatatcctttctt 28181
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>gb|AC124107.8| Mus musculus chromosome 5, clone RP24-317M4, complete sequence
          Length = 194641

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  tttaagaagaaaaaggagga 184
            ||||||||||||||||||||
Sbjct: 8592 tttaagaagaaaaaggagga 8573
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>ref|XM_429825.1| PREDICTED: Gallus gallus LOC421235 (LOC421235), mRNA
          Length = 1766

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 418 cctcagcacgaagtttctcc 437
           ||||||||||||||||||||
Sbjct: 147 cctcagcacgaagtttctcc 166
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>gb|AC145996.3| Pan troglodytes BAC clone RP43-17D11 from 7, complete sequence
          Length = 183826

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   cagaaatagaaattcagttt 123
             ||||||||||||||||||||
Sbjct: 61954 cagaaatagaaattcagttt 61973
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>emb|CR293499.22| Zebrafish DNA sequence from clone CH211-106H12 in linkage group 10,
             complete sequence
          Length = 110501

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   cattgtaaggatttgcagca 329
             ||||||||||||||||||||
Sbjct: 75399 cattgtaaggatttgcagca 75380
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>gb|AC112144.4| Mus musculus BAC clone RP23-32B4 from 19, complete sequence
          Length = 216521

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 454    aaaccaatttcttctgcatctcttgtcc 481
              ||||||||||| |||||||||| |||||
Sbjct: 108150 aaaccaatttcctctgcatctcatgtcc 108177
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>gb|AC158912.3| Mus musculus chromosome 5, clone RP23-131C17, complete sequence
          Length = 182161

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   tttaagaagaaaaaggagga 184
             ||||||||||||||||||||
Sbjct: 59630 tttaagaagaaaaaggagga 59611
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>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    tttaagaagaaaaaggagga 184
              ||||||||||||||||||||
Sbjct: 225485 tttaagaagaaaaaggagga 225466
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>emb|AJ489252.1|ECH489252 Erwinia chrysanthemi phoP gene and phoQ gene
          Length = 2853

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 tgagaaccagaatcggtagc 283
           ||||||||||||||||||||
Sbjct: 759 tgagaaccagaatcggtagc 740
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>gb|AC155276.3| Mus musculus BAC clone RP23-26E18 from chromosome 8, complete sequence
          Length = 234359

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aaggcatatctgactagcca 88
             ||||||||||||||||||||
Sbjct: 25174 aaggcatatctgactagcca 25155
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>emb|AJ811729.1| Corallococcus coralloides partial gyrB gene for gyrase B, strain
           DSM 52496
          Length = 1158

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 tgtccgcagtcatctccgtc 204
           ||||||||||||||||||||
Sbjct: 634 tgtccgcagtcatctccgtc 653
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>gb|AC117383.4| Homo sapiens 3 BAC RP11-789L4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 194991

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    ggcgccccaggaactgtgcg 246
              ||||||||||||||||||||
Sbjct: 122054 ggcgccccaggaactgtgcg 122073
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>gb|AC053545.5| Homo sapiens BAC clone RP11-804C24 from 4, complete sequence
          Length = 188927

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 461   tttcttctgcatctcttgtccctg 484
             |||||||||| |||||||||||||
Sbjct: 46974 tttcttctgcttctcttgtccctg 46997
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>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence
          Length = 164472

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 404    ctcagcattagcaacctcag 423
              ||||||||||||||||||||
Sbjct: 104808 ctcagcattagcaacctcag 104789
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>emb|BX465227.3| Zebrafish DNA sequence from clone RP71-40K24 in linkage group 17,
              complete sequence
          Length = 161395

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    cattgtaaggatttgcagca 329
              ||||||||||||||||||||
Sbjct: 159372 cattgtaaggatttgcagca 159353
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>gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, complete sequence
          Length = 164620

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 322    ttgcagcataattggcattaggat 345
              |||||||| |||||||||||||||
Sbjct: 125600 ttgcagcacaattggcattaggat 125577
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>gb|AC155816.3| Mus musculus BAC clone RP23-435J8 from chromosome 8, complete sequence
          Length = 207128

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     aaggcatatctgactagcca 88
              ||||||||||||||||||||
Sbjct: 130452 aaggcatatctgactagcca 130433
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>gb|AC022215.4|AC022215 Homo sapiens BAC clone RP11-764I5 from 3, complete sequence
          Length = 180068

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  ggcgccccaggaactgtgcg 246
            ||||||||||||||||||||
Sbjct: 6661 ggcgccccaggaactgtgcg 6642
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>emb|BX571957.10| Zebrafish DNA sequence from clone DKEYP-117B4 in linkage group 18,
            complete sequence
          Length = 179945

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  cattgtaaggatttgcagca 329
            ||||||||||||||||||||
Sbjct: 6201 cattgtaaggatttgcagca 6220
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>emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in linkage group 21,
             complete sequence
          Length = 178610

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   cattgtaaggatttgcagca 329
             ||||||||||||||||||||
Sbjct: 68555 cattgtaaggatttgcagca 68536
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>dbj|AK101679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058I10, full
            insert sequence
          Length = 2150

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  gcaacctcagcacgaagttt 433
            ||||||||||||||||||||
Sbjct: 1323 gcaacctcagcacgaagttt 1304
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>emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in linkage group 20,
              complete sequence
          Length = 212105

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    cattgtaaggatttgcagca 329
              ||||||||||||||||||||
Sbjct: 181827 cattgtaaggatttgcagca 181808
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>emb|BX957315.10| Zebrafish DNA sequence from clone CH211-254E15 in linkage group 19,
             complete sequence
          Length = 139744

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   agcatttacttgattcatgc 300
             ||||||||||||||||||||
Sbjct: 39036 agcatttacttgattcatgc 39017
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     agaaatagaaattcagtttg 124
               ||||||||||||||||||||
Sbjct: 1738449 agaaatagaaattcagtttg 1738430
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>emb|AL731548.13| Mouse DNA sequence from clone RP23-71M18 on chromosome X, complete
              sequence
          Length = 218612

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 499    catatcctttcttctcaagctcaa 522
              |||| |||||||||||||||||||
Sbjct: 211742 catagcctttcttctcaagctcaa 211765
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>emb|CR394538.6| Zebrafish DNA sequence from clone DKEY-189I22 in linkage group 10,
              complete sequence
          Length = 155394

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    cattgtaaggatttgcagca 329
              ||||||||||||||||||||
Sbjct: 146487 cattgtaaggatttgcagca 146468
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>gb|AF001958.1|AF001958 Ambystoma tigrinum electrogenic Na+ bicarbonate cotransporter (NBC)
            mRNA, complete cds
          Length = 4202

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  taagaagaaaaaggaggatg 186
            ||||||||||||||||||||
Sbjct: 3034 taagaagaaaaaggaggatg 3053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,157,117
Number of Sequences: 3902068
Number of extensions: 5157117
Number of successful extensions: 111471
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111309
Number of HSP's gapped (non-prelim): 160
length of query: 542
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 519
effective length of database: 17,143,297,704
effective search space: 8897371508376
effective search space used: 8897371508376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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