ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 7e-80
2gb|AY104635.1| Zea mays PCO115798 mRNA sequence 206 5e-50
3gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome... 178 1e-41
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 178 1e-41
6gb|AC096584.1| Homo sapiens BAC clone RP11-663G9 from 2, complet... 48 0.028
7gb|AC113293.16| Mus musculus chromosome 3, clone RP23-418O15, co... 44 0.43
8gb|AC092213.4| Homo sapiens BAC clone RP11-190I6 from 7, complet... 42 1.7
9gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete ... 42 1.7
10emb|AL772217.10| Mouse DNA sequence from clone RP23-160K5 on chr... 42 1.7
11emb|AL365334.13| Mouse DNA sequence from clone RP23-392F1 on chr... 42 1.7
12gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosom... 40 6.8
13ref|XM_809116.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.8
14emb|BX957220.1| Methanococcus maripaludis S2 complete genome; se... 40 6.8
15gb|AC107032.4| Homo sapiens 12 BAC RP11-613M5 (Roswell Park Canc... 40 6.8
16gb|AC010016.6| Drosophila melanogaster 3L BAC RP98-10M10 (Roswel... 40 6.8
17gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswel... 40 6.8
18dbj|BS000237.1| Pan troglodytes chromosome 22 clone:PTB-044B23, ... 40 6.8
19gb|AC154420.2| Mus musculus BAC clone RP24-212L9 from 14, comple... 40 6.8
20gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37... 40 6.8
21dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.8
22dbj|AP001050.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 6.8 
>dbj|AK111924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C03, full
            insert sequence
          Length = 1356

 Score =  305 bits (154), Expect = 7e-80
 Identities = 226/250 (90%)
 Strand = Plus / Minus

                                                                        
Query: 245  cctttaccatcagctgtgtcaaaataaaagaaactcttgatcgtgtcgcccttacaagat 304
            |||||||||||||| | |||  |||| |||||| |||||||||  || ||||||| ||||
Sbjct: 1064 cctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccagat 1005

                                                                        
Query: 305  atagacttgatcacctcctgaccaagaatgccaccaaggattgcacatacaggaggatgt 364
            || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1004 attgacttaatcacctcctgaccaagaatgccgccaaggattgcacatacaggaggatgt 945

                                                                        
Query: 365  tccttctttccagctgctaaaagccgttccagtagagccgtaggaatttgagactcgctt 424
            | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct: 944  tgcttctttccagctgctaaaagccgttccaggagagcagtaggaatttgagactcactt 885

                                                                        
Query: 425  aaagacattctatcacacatatccttcctccaagccaaaactgcaggtagatcagaaagt 484
            ||||||||| |||||||||| |||||||||  |||||||||||||||| |||||||||||
Sbjct: 884  aaagacattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaagt 825

                      
Query: 485  gctgtctcac 494
            | || |||||
Sbjct: 824  gatgcctcac 815
to top
>gb|AY104635.1| Zea mays PCO115798 mRNA sequence
          Length = 1324

 Score =  206 bits (104), Expect = 5e-50
 Identities = 230/272 (84%)
 Strand = Plus / Minus

                                                                        
Query: 227  gggatgtcctccatgacacctttaccatcagctgtgtcaaaataaaagaaactcttgatc 286
            ||||| ||||| |||||||||||||| |||||    || ||||| |||||| ||||||  
Sbjct: 1092 gggatatcctcgatgacacctttaccgtcagccacatcgaaatagaagaaattcttgact 1033

                                                                        
Query: 287  gtgtcgcccttacaagatatagacttgatcacctcctgaccaagaatgccaccaaggatt 346
            |  |||||||| || ||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 1032 ggatcgcccttgcaggatatcgatttgatcacctcctgaccaagaataccaccaaggata 973

                                                                        
Query: 347  gcacatacaggaggatgttccttctttccagctgctaaaagccgttccagtagagccgta 406
            ||||||||||||||||| |||||||||||||||||||  || |||||||  ||||  |||
Sbjct: 972  gcacatacaggaggatgctccttctttccagctgctagcagtcgttccacgagagtagta 913

                                                                        
Query: 407  ggaatttgagactcgcttaaagacattctatcacacatatccttcctccaagccaaaact 466
            |||||  |||||||  | ||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 912  ggaatacgagactcattcaaagacattttatcacacatatccttcctccgagccagaact 853

                                            
Query: 467  gcaggtagatcagaaagtgctgtctcaccagg 498
            |||  || ||||||||||| ||| || |||||
Sbjct: 852  gcatctatatcagaaagtgttgtttcgccagg 821
to top
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0018F17, complete sequence
          Length = 104291

 Score =  178 bits (90), Expect = 1e-41
 Identities = 105/110 (95%)
 Strand = Plus / Minus

                                                                         
Query: 321   cctgaccaagaatgccaccaaggattgcacatacaggaggatgttccttctttccagctg 380
             |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 54866 cctgaccaagaatgccgccaaggattgcacatacaggaggatgttgcttctttccagctg 54807

                                                               
Query: 381   ctaaaagccgttccagtagagccgtaggaatttgagactcgcttaaagac 430
             |||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 54806 ctaaaagccgttccaggagagcagtaggaatttgagactcacttaaagac 54757



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                         
Query: 430   cattctatcacacatatccttcctccaagccaaaactgcaggtagatcagaaagtgctgt 489
             |||| |||||||||| |||||||||  |||||||||||||||| |||||||||||| || 
Sbjct: 54680 cattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaagtgatgc 54621

                  
Query: 490   ctcac 494
             |||||
Sbjct: 54620 ctcac 54616



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 245   cctttaccatcagctgtgtcaaaataaaagaaactcttgatcgtgtcgcccttacaagat 304
             |||||||||||||| | |||  |||| |||||| |||||||||  || ||||||| ||||
Sbjct: 55906 cctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccagat 55847

                                 
Query: 305   atagacttgatcacctcctg 324
             || ||||| |||||||||||
Sbjct: 55846 attgacttaatcacctcctg 55827
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  178 bits (90), Expect = 1e-41
 Identities = 105/110 (95%)
 Strand = Plus / Minus

                                                                            
Query: 321      cctgaccaagaatgccaccaaggattgcacatacaggaggatgttccttctttccagctg 380
                |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17080910 cctgaccaagaatgccgccaaggattgcacatacaggaggatgttgcttctttccagctg 17080851

                                                                  
Query: 381      ctaaaagccgttccagtagagccgtaggaatttgagactcgcttaaagac 430
                |||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 17080850 ctaaaagccgttccaggagagcagtaggaatttgagactcacttaaagac 17080801



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 430      cattctatcacacatatccttcctccaagccaaaactgcaggtagatcagaaagtgctgt 489
                |||| |||||||||| |||||||||  |||||||||||||||| |||||||||||| || 
Sbjct: 17080724 cattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaagtgatgc 17080665

                     
Query: 490      ctcac 494
                |||||
Sbjct: 17080664 ctcac 17080660



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 245      cctttaccatcagctgtgtcaaaataaaagaaactcttgatcgtgtcgcccttacaagat 304
                |||||||||||||| | |||  |||| |||||| |||||||||  || ||||||| ||||
Sbjct: 17081950 cctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccagat 17081891

                                    
Query: 305      atagacttgatcacctcctg 324
                || ||||| |||||||||||
Sbjct: 17081890 attgacttaatcacctcctg 17081871
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  178 bits (90), Expect = 1e-41
 Identities = 105/110 (95%)
 Strand = Plus / Minus

                                                                            
Query: 321      cctgaccaagaatgccaccaaggattgcacatacaggaggatgttccttctttccagctg 380
                |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17175591 cctgaccaagaatgccgccaaggattgcacatacaggaggatgttgcttctttccagctg 17175532

                                                                  
Query: 381      ctaaaagccgttccagtagagccgtaggaatttgagactcgcttaaagac 430
                |||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 17175531 ctaaaagccgttccaggagagcagtaggaatttgagactcacttaaagac 17175482



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 430      cattctatcacacatatccttcctccaagccaaaactgcaggtagatcagaaagtgctgt 489
                |||| |||||||||| |||||||||  |||||||||||||||| |||||||||||| || 
Sbjct: 17175405 cattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaagtgatgc 17175346

                     
Query: 490      ctcac 494
                |||||
Sbjct: 17175345 ctcac 17175341



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 245      cctttaccatcagctgtgtcaaaataaaagaaactcttgatcgtgtcgcccttacaagat 304
                |||||||||||||| | |||  |||| |||||| |||||||||  || ||||||| ||||
Sbjct: 17176631 cctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccagat 17176572

                                    
Query: 305      atagacttgatcacctcctg 324
                || ||||| |||||||||||
Sbjct: 17176571 attgacttaatcacctcctg 17176552
to top
>gb|AC096584.1| Homo sapiens BAC clone RP11-663G9 from 2, complete sequence
          Length = 15672

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 229  gatgtcctccatgacacctttaccatca 256
            ||||||||||||||||| ||||||||||
Sbjct: 9359 gatgtcctccatgacacatttaccatca 9332
to top
>gb|AC113293.16| Mus musculus chromosome 3, clone RP23-418O15, complete sequence
          Length = 179590

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 265   aaaataaaagaaactcttgatc 286
             ||||||||||||||||||||||
Sbjct: 46912 aaaataaaagaaactcttgatc 46933
to top
>gb|AC092213.4| Homo sapiens BAC clone RP11-190I6 from 7, complete sequence
          Length = 137237

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 366    ccttctttccagctgctaaaa 386
              |||||||||||||||||||||
Sbjct: 118797 ccttctttccagctgctaaaa 118777
to top
>gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete sequence
          Length = 182958

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   ccttctttccagctgctaaaa 386
             |||||||||||||||||||||
Sbjct: 91388 ccttctttccagctgctaaaa 91408
to top
>emb|AL772217.10| Mouse DNA sequence from clone RP23-160K5 on chromosome 2, complete
             sequence
          Length = 202067

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 217   cggggttggggggatgtcctc 237
             |||||||||||||||||||||
Sbjct: 46799 cggggttggggggatgtcctc 46819
to top
>emb|AL365334.13| Mouse DNA sequence from clone RP23-392F1 on chromosome 1, complete
             sequence
          Length = 173053

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 463   aactgcaggtagatcagaaag 483
             |||||||||||||||||||||
Sbjct: 58003 aactgcaggtagatcagaaag 58023
to top
>gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosome 16, complete sequence
          Length = 193398

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    tcaaaataaaagaaactctt 282
              ||||||||||||||||||||
Sbjct: 105084 tcaaaataaaagaaactctt 105065
to top
>ref|XM_809116.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053504213.60) partial mRNA
          Length = 3207

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  ctgcctctgccaccgatatg 119
            ||||||||||||||||||||
Sbjct: 2428 ctgcctctgccaccgatatg 2409
to top
>emb|BX957220.1| Methanococcus maripaludis S2 complete genome; segment 2/5
          Length = 349648

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   aaaataaaagaaactcttga 284
             ||||||||||||||||||||
Sbjct: 86721 aaaataaaagaaactcttga 86702
to top
>gb|AC107032.4| Homo sapiens 12 BAC RP11-613M5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162515

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   ctgtgtcaaaataaaagaaa 277
             ||||||||||||||||||||
Sbjct: 20513 ctgtgtcaaaataaaagaaa 20532
to top
>gb|AC010016.6| Drosophila melanogaster 3L BAC RP98-10M10 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 174616

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 252  catcagctgtgtcaaaataaaaga 275
            |||||||||||| |||||||||||
Sbjct: 8824 catcagctgtgttaaaataaaaga 8847
to top
>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170356

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    catcagctgtgtcaaaataaaaga 275
              |||||||||||| |||||||||||
Sbjct: 127308 catcagctgtgttaaaataaaaga 127331
to top
>dbj|BS000237.1| Pan troglodytes chromosome 22 clone:PTB-044B23, map 22, complete
             sequences
          Length = 144611

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   atatggagttgtcacatgtt 134
             ||||||||||||||||||||
Sbjct: 53360 atatggagttgtcacatgtt 53379
to top
>gb|AC154420.2| Mus musculus BAC clone RP24-212L9 from 14, complete sequence
          Length = 159591

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   ctgtgtcaaaataaaagaaa 277
             ||||||||||||||||||||
Sbjct: 68288 ctgtgtcaaaataaaagaaa 68307
to top
>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete
              sequence
          Length = 244140

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 252    catcagctgtgtcaaaataaaaga 275
              |||||||||||| |||||||||||
Sbjct: 138593 catcagctgtgttaaaataaaaga 138616
to top
>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    atatggagttgtcacatgtt 134
              ||||||||||||||||||||
Sbjct: 260305 atatggagttgtcacatgtt 260324
to top
>dbj|AP001050.1| Homo sapiens genomic DNA, chromosome 21, clone:KB953G5, MX1-D21S171
             region, complete sequence
          Length = 98992

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   atatggagttgtcacatgtt 134
             ||||||||||||||||||||
Sbjct: 38222 atatggagttgtcacatgtt 38241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,091,350
Number of Sequences: 3902068
Number of extensions: 5091350
Number of successful extensions: 92597
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92517
Number of HSP's gapped (non-prelim): 79
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top