ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 129 1e-26
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
3dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
4gb|AY106159.1| Zea mays PCO146144 mRNA sequence 94 6e-16
5ref|NM_190557.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
7dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
8dbj|AK100245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
9gb|AC166316.2| Mus musculus chromosome 19, clone RP23-466L5, com... 42 1.8
10ref|XM_751952.1| Ustilago maydis 521 hypothetical protein (UM008... 42 1.8
11dbj|AB234511.1| Uncultured Clostridiales bacterium gene for 16S ... 42 1.8
12gb|AC159982.4| Mus musculus chromosome 19, clone RP24-383P9, com... 42 1.8
13gb|AC122119.11| Mus musculus chromosome 19, clone RP24-252F4, co... 42 1.8
14emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on ch... 42 1.8
15gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, com... 40 7.2
16gb|AC147072.3| Pan troglodytes BAC clone RP43-168P22 from 7, com... 40 7.2
17gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 40 7.2
18gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome... 40 7.2
19gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, comple... 40 7.2
20gb|AC073346.12| Homo sapiens BAC clone RP11-736E3 from 7, comple... 40 7.2
21emb|X54253.1|MTAS Ascaris suum complete mitochondrial genome 40 7.2
22emb|CR376736.5| Zebrafish DNA sequence from clone DKEYP-86G11 in... 40 7.2
23dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 7.2
24gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, comple... 40 7.2
25ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventio... 40 7.2
26gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromo... 40 7.2
27gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.2
28emb|Z66563.1|CEF46C3 Caenorhabditis elegans Cosmid F46C3, comple... 40 7.2
29gb|AC169792.2| Rhesus Macaque BAC CH250-117K11 (Children's Hosp... 40 7.2 
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score =  129 bits (65), Expect = 1e-26
 Identities = 107/121 (88%)
 Strand = Plus / Minus

                                                                         
Query: 374   tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 433
             ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 80323 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 80264

                                                                         
Query: 434   gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 493
             || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 80263 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 80204

              
Query: 494   a 494
             |
Sbjct: 80203 a 80203



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                
Query: 204   ttcttatgctgcaacaacaaaaccagaatctatcg 238
             |||||||||||||||||| |||| |||||||||||
Sbjct: 80481 ttcttatgctgcaacaac-aaacaagaatctatcg 80448
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  129 bits (65), Expect = 1e-26
 Identities = 107/121 (88%)
 Strand = Plus / Minus

                                                                            
Query: 374      tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 433
                ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 22378688 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 22378629

                                                                            
Query: 434      gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 493
                || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 22378628 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 22378569

                 
Query: 494      a 494
                |
Sbjct: 22378568 a 22378568



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                   
Query: 204      ttcttatgctgcaacaacaaaaccagaatctatcg 238
                |||||||||||||||||| |||| |||||||||||
Sbjct: 22378846 ttcttatgctgcaacaac-aaacaagaatctatcg 22378813
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>dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G20, full
            insert sequence
          Length = 2880

 Score =  129 bits (65), Expect = 1e-26
 Identities = 107/121 (88%)
 Strand = Plus / Minus

                                                                        
Query: 374  tcttcgtcctggaacccctgcttgaagaggtcatagtttgttagctcggctgccttgaag 433
            ||||| ||||||||||| |||||||||||||| ||||| ||| |||||| ||||||||| 
Sbjct: 2597 tcttcatcctggaacccttgcttgaagaggtcgtagttagttggctcggatgccttgaaa 2538

                                                                        
Query: 434  gggcggtctcctaataccctggtcagatcgtcctggtggaggacctccttctcgagcagc 493
            || || ||||||||||||||   || ||||||||||||||||||||||||||| ||||||
Sbjct: 2537 ggccgttctcctaataccctaaccaaatcgtcctggtggaggacctccttctcaagcagc 2478

             
Query: 494  a 494
            |
Sbjct: 2477 a 2477



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                               
Query: 204  ttcttatgctgcaacaacaaaaccagaatctatcg 238
            |||||||||||||||||| |||| |||||||||||
Sbjct: 2755 ttcttatgctgcaacaac-aaacaagaatctatcg 2722
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>gb|AY106159.1| Zea mays PCO146144 mRNA sequence
          Length = 1581

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 398  aagaggtcatagtttgttagctcggctgccttgaaggggcggtctcctaataccctggtc 457
            |||||||| ||||| ||| ||||   ||||||||| || || ||||||| ||||||||| 
Sbjct: 1206 aagaggtcgtagttggttggctccagtgccttgaatggacgttctcctagtaccctggtt 1147

                                                           
Query: 458  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 504
            |||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct: 1146 agatcgtcctggtgtaggacttccttctcgagcagcaattctgcgat 1100
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>ref|NM_190557.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2409

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 458  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 504
            ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 2255 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 2209
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                               
Query: 458      agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 504
                ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 36176162 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 36176208
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>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406G08
          Length = 144233

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 458   agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 504
             ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 53175 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 53221
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>dbj|AK100245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056H19, full
            insert sequence
          Length = 2766

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 458  agatcgtcctggtggaggacctccttctcgagcagcaactccgcgat 504
            ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||
Sbjct: 2326 agatcatcctggtggagaacctctttctcaagcagcagctcggcgat 2280
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>gb|AC166316.2| Mus musculus chromosome 19, clone RP23-466L5, complete sequence
          Length = 185237

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 146   aataaataaaactggcatgactgat 170
             ||||||||||||||| |||||||||
Sbjct: 81606 aataaataaaactggtatgactgat 81630
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>ref|XM_751952.1| Ustilago maydis 521 hypothetical protein (UM00898.1) partial mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 475  gacctccttctcgagcagcaactccgcga 503
            |||||||||||||||||||| || |||||
Sbjct: 2388 gacctccttctcgagcagcagctgcgcga 2360
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>dbj|AB234511.1| Uncultured Clostridiales bacterium gene for 16S rRNA, partial
           sequence, clone: MgMjW-48
          Length = 1362

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 109 ggccagctgcggaaagcctag 129
           |||||||||||||||||||||
Sbjct: 195 ggccagctgcggaaagcctag 215
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>gb|AC159982.4| Mus musculus chromosome 19, clone RP24-383P9, complete sequence
          Length = 198886

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 146    aataaataaaactggcatgactgat 170
              ||||||||||||||| |||||||||
Sbjct: 126510 aataaataaaactggtatgactgat 126534
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>gb|AC122119.11| Mus musculus chromosome 19, clone RP24-252F4, complete sequence
          Length = 183160

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 146   aataaataaaactggcatgactgat 170
             ||||||||||||||| |||||||||
Sbjct: 86813 aataaataaaactggtatgactgat 86789
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>emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on chromosome X, complete
             sequence
          Length = 192292

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   tttatacagtttttacttctt 208
             |||||||||||||||||||||
Sbjct: 38870 tttatacagtttttacttctt 38890
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>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 392    tgcttgaagaggtcatagtttgtt 415
              |||||| |||||||||||||||||
Sbjct: 111149 tgcttggagaggtcatagtttgtt 111172
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>gb|AC147072.3| Pan troglodytes BAC clone RP43-168P22 from 7, complete sequence
          Length = 151952

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    ctacttgttccttcttctcc 529
              ||||||||||||||||||||
Sbjct: 142917 ctacttgttccttcttctcc 142936
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>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    cttgttccttcttctccgtt 532
              ||||||||||||||||||||
Sbjct: 137381 cttgttccttcttctccgtt 137362
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>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   cttgttccttcttctccgtt 532
             ||||||||||||||||||||
Sbjct: 37961 cttgttccttcttctccgtt 37942
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>gb|AC122249.4| Mus musculus BAC clone RP23-164F15 from 1, complete sequence
          Length = 207471

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 392    tgcttgaagaggtcatagtttgtt 415
              |||||| |||||||||||||||||
Sbjct: 203925 tgcttggagaggtcatagtttgtt 203948
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>gb|AC073346.12| Homo sapiens BAC clone RP11-736E3 from 7, complete sequence
          Length = 180651

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   ctacttgttccttcttctcc 529
             ||||||||||||||||||||
Sbjct: 33453 ctacttgttccttcttctcc 33434
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>emb|X54253.1|MTAS Ascaris suum complete mitochondrial genome
          Length = 14284

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 202  acttcttatgctgcaacaacaaaaccag 229
            ||||||||||||  ||||||||||||||
Sbjct: 4255 acttcttatgctataacaacaaaaccag 4228
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>emb|CR376736.5| Zebrafish DNA sequence from clone DKEYP-86G11 in linkage group 24,
             complete sequence
          Length = 204538

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 144   ctaataaataaaactggcatgact 167
             |||| |||||||||||||||||||
Sbjct: 56147 ctaaaaaataaaactggcatgact 56170
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    agcagcaactccgcgataag 507
              ||||||||||||||||||||
Sbjct: 802604 agcagcaactccgcgataag 802623
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>gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, complete sequence
          Length = 170212

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   tgccatgtacagctgtgtag 269
             ||||||||||||||||||||
Sbjct: 91013 tgccatgtacagctgtgtag 90994
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>ref|NM_077513.3| Caenorhabditis elegans Heavy chain, Unconventional Myosin family
            member (hum-4) (hum-4) mRNA, complete cds
          Length = 8759

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 510  ctacttgttccttcttctcc 529
            ||||||||||||||||||||
Sbjct: 7968 ctacttgttccttcttctcc 7987
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>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown,
            complete sequence
          Length = 207792

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  tgccatgtacagctgtgtag 269
            ||||||||||||||||||||
Sbjct: 3022 tgccatgtacagctgtgtag 3003
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 480     ccttctcgagcagcaactccgcga 503
               ||||||||||||||| ||||||||
Sbjct: 4928606 ccttctcgagcagcagctccgcga 4928583
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>emb|Z66563.1|CEF46C3 Caenorhabditis elegans Cosmid F46C3, complete sequence
          Length = 29777

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   ctacttgttccttcttctcc 529
             ||||||||||||||||||||
Sbjct: 11078 ctacttgttccttcttctcc 11059
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>gb|AC169792.2| Rhesus Macaque  BAC CH250-117K11 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 186393

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   tgccatgtacagctgtgtag 269
             ||||||||||||||||||||
Sbjct: 20044 tgccatgtacagctgtgtag 20063


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,028,109
Number of Sequences: 3902068
Number of extensions: 5028109
Number of successful extensions: 87792
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87644
Number of HSP's gapped (non-prelim): 148
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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