ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC079594.14| Homo sapiens 3 BAC RP11-432B6 (Roswell Park Canc... 42 0.44
2gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, com... 40 1.7
3gb|AC164559.3| Mus musculus BAC clone RP23-198H17 from chromosom... 40 1.7
4gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosom... 40 1.7
5gb|AC122880.4| Mus musculus BAC clone RP23-77F18 from 8, complet... 40 1.7
6gb|AC130799.19| Medicago truncatula clone mth2-34b13, complete s... 40 1.7
7emb|AL359266.14| Human DNA sequence from clone RP11-26P21 on chr... 40 1.7
8emb|AL049544.4|HSDJ240B8 Human DNA sequence from clone RP1-240B8... 40 1.7
9gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, compl... 40 1.7
10gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 1.7
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
13gb|AC154249.2| Mus musculus BAC clone RP24-188L2 from chromosome... 40 1.7
14gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosom... 40 1.7
15gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q... 40 1.7
16gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 40 1.7
17dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
18dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
19dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
20dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
21gb|AC169700.1| Rhesus Macaque BAC CH250-20P14 (Children's Hospi... 38 6.9
22gb|AC169697.1| Rhesus Macaque BAC CH250-38L23 (Children's Hospi... 38 6.9
23gb|L29195.1|PIGREPD Sus scrofa microsatellite S0228 DNA sequence 38 6.9
24gb|AC161205.3| Mus musculus chromosome 7, clone RP23-53C15, comp... 38 6.9
25emb|CR812476.12| Zebrafish DNA sequence from clone DKEY-60I7 in ... 38 6.9
26emb|Z68012.1|CET24D5 Caenorhabditis elegans Cosmid T24D5, comple... 38 6.9
27gb|AC124493.4| Mus musculus BAC clone RP23-462P13 from chromosom... 38 6.9
28gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome... 38 6.9
29gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosom... 38 6.9
30emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in ... 38 6.9
31emb|BX322650.2| Human DNA sequence from clone RP11-49C9 on chrom... 38 6.9
32emb|AL451166.16| Human DNA sequence from clone RP11-157D6 on chr... 38 6.9
33emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chro... 38 6.9
34emb|AL158847.22| Human DNA sequence from clone RP4-735C1 on chro... 38 6.9
35emb|AL136441.16| Human DNA sequence from clone RP11-19D22 on chr... 38 6.9
36gb|AC117459.6| Homo sapiens 3 BAC RP11-343L17 (Roswell Park Canc... 38 6.9
37gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, com... 38 6.9
38emb|BX120006.15| Zebrafish DNA sequence from clone DKEYP-21H4 in... 38 6.9
39gb|AC125062.5| Mus musculus BAC clone RP23-419P12 from chromosom... 38 6.9
40emb|BX548251.5| Zebrafish DNA sequence from clone BUSM1-127I14, ... 38 6.9
41gb|AC092860.39| Pan troglodytes clone rp43-125j14, complete sequ... 38 6.9
42gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, com... 38 6.9
43gb|AC097501.3| Homo sapiens BAC clone RP11-340A13 from 4, comple... 38 6.9
44gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, co... 38 6.9
45gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (PO... 38 6.9
46gb|AC154711.2| Mus musculus BAC clone RP24-359E16 from chromosom... 38 6.9
47dbj|AK048285.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 38 6.9
48gb|AC108017.4| Homo sapiens BAC clone CTD-2005A22 from 4, comple... 38 6.9
49gb|AC012152.13| Homo sapiens 3 BAC CTC-552C10 (Cal Tech Human BA... 38 6.9
50gb|AC012001.6| Homo sapiens BAC clone RP11-465G21 from 2, comple... 38 6.9
51gb|AC092058.3| Homo sapiens chromosome 3 clone RP11-667E17, comp... 38 6.9
52emb|BX323812.10| Zebrafish DNA sequence from clone CH211-150H8 i... 38 6.9
53gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromo... 38 6.9
54emb|CT025521.10| Mouse DNA sequence from clone RP23-337J16 on ch... 38 6.9
55gb|AC121815.4| Mus musculus BAC clone RP23-458C8 from 7, complet... 38 6.9
56emb|AL929150.12| Zebrafish DNA sequence from clone CH211-196H16 ... 38 6.9
57emb|AJ811455.1| Human adenovirus type 38 partial Y(gamma)-determ... 38 6.9
58emb|AL928721.5| Mouse DNA sequence from clone RP23-402N20 on chr... 38 6.9
59emb|AL662895.7| Mouse DNA sequence from clone RP23-340L19 on chr... 38 6.9
60emb|AL672286.9| Mouse DNA sequence from clone RP23-48B17 on chro... 38 6.9
61emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chr... 38 6.9
62gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Canc... 38 6.9
63emb|AL831760.3| Mouse DNA sequence from clone RP23-382F2 on chro... 38 6.9 
>gb|AC079594.14| Homo sapiens 3 BAC RP11-432B6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 124701

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 53     aatatacatgaaactaaaatt 73
              |||||||||||||||||||||
Sbjct: 121535 aatatacatgaaactaaaatt 121555
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>gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, complete sequence
          Length = 212109

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ttaaatatacatgaaactaa 69
              ||||||||||||||||||||
Sbjct: 204188 ttaaatatacatgaaactaa 204169
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>gb|AC164559.3| Mus musculus BAC clone RP23-198H17 from chromosome 6, complete sequence
          Length = 194636

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     tatacatgaaactaaaattt 74
              ||||||||||||||||||||
Sbjct: 118094 tatacatgaaactaaaattt 118113
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>gb|AC127267.3| Mus musculus BAC clone RP23-401H14 from chromosome 6, complete sequence
          Length = 186704

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tatacatgaaactaaaattt 74
             ||||||||||||||||||||
Sbjct: 69388 tatacatgaaactaaaattt 69407
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>gb|AC122880.4| Mus musculus BAC clone RP23-77F18 from 8, complete sequence
          Length = 189549

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    aaaaataccacacaaggaaa 121
              ||||||||||||||||||||
Sbjct: 125261 aaaaataccacacaaggaaa 125242
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>gb|AC130799.19| Medicago truncatula clone mth2-34b13, complete sequence
          Length = 133305

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    ctaaaattttgagatgcgga 85
             ||||||||||||||||||||
Sbjct: 87796 ctaaaattttgagatgcgga 87777
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>emb|AL359266.14| Human DNA sequence from clone RP11-26P21 on chromosome 13 Contains the 3'
              end of the DIAPH3 gene for diaphanous homolog 3
              (Drosophila), complete sequence
          Length = 206407

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     atacatgaaactaaaatttt 75
              ||||||||||||||||||||
Sbjct: 146492 atacatgaaactaaaatttt 146473
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>emb|AL049544.4|HSDJ240B8 Human DNA sequence from clone RP1-240B8 on chromosome 6 Contains the 3'
             end of the KHDRBS2 gene for KH domain containing RNA
             binding signal transduction associated protein 2 and a
             novel gene, complete sequence
          Length = 103610

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   acaaggaaaaagattgggaaagaa 136
             ||||||||||||||| ||||||||
Sbjct: 66214 acaaggaaaaagatttggaaagaa 66191
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>gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, complete sequence
          Length = 164454

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     tacatgaaactaaaattttg 76
              ||||||||||||||||||||
Sbjct: 156177 tacatgaaactaaaattttg 156196
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 119     aaaaagattgggaaagaagg 138
               ||||||||||||||||||||
Sbjct: 3170494 aaaaagattgggaaagaagg 3170475
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 63       aaactaaaattttgagatgc 82
                ||||||||||||||||||||
Sbjct: 18289197 aaactaaaattttgagatgc 18289178
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 105      aataccacacaaggaaaaag 124
                ||||||||||||||||||||
Sbjct: 27439063 aataccacacaaggaaaaag 27439044
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>gb|AC154249.2| Mus musculus BAC clone RP24-188L2 from chromosome 14, complete sequence
          Length = 149132

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    tgcaagatttaaatatacatgaaa 65
             ||||||||||||||||| ||||||
Sbjct: 11027 tgcaagatttaaatataaatgaaa 11050
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>gb|AC154657.2| Mus musculus BAC clone RP24-269C17 from chromosome 14, complete
             sequence
          Length = 156881

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    tgcaagatttaaatatacatgaaa 65
             ||||||||||||||||| ||||||
Sbjct: 31729 tgcaagatttaaatataaatgaaa 31706
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>gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q24.3, complete sequence
          Length = 140425

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   aaaaagattgggaaagaaggaagg 142
             |||||||||||| |||||||||||
Sbjct: 79528 aaaaagattggggaagaaggaagg 79551
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    aaatatacatgaaactaaaa 71
             ||||||||||||||||||||
Sbjct: 68843 aaatatacatgaaactaaaa 68862
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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0018C07
          Length = 141707

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  aataccacacaaggaaaaag 124
            ||||||||||||||||||||
Sbjct: 3034 aataccacacaaggaaaaag 3015
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>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0003M19
          Length = 171790

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    aataccacacaaggaaaaag 124
              ||||||||||||||||||||
Sbjct: 144724 aataccacacaaggaaaaag 144705
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0463G11
          Length = 154188

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   aaactaaaattttgagatgc 82
            ||||||||||||||||||||
Sbjct: 3933 aaactaaaattttgagatgc 3914
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>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0556A05
          Length = 158189

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     aaactaaaattttgagatgc 82
              ||||||||||||||||||||
Sbjct: 137921 aaactaaaattttgagatgc 137902
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>gb|AC169700.1| Rhesus Macaque  BAC CH250-20P14 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 195624

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 126    ttgggaaagaaggaaggta 144
              |||||||||||||||||||
Sbjct: 169960 ttgggaaagaaggaaggta 169978
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>gb|AC169697.1| Rhesus Macaque  BAC CH250-38L23 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 154876

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    ttgggaaagaaggaaggta 144
              |||||||||||||||||||
Sbjct: 131152 ttgggaaagaaggaaggta 131134
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>gb|L29195.1|PIGREPD Sus scrofa microsatellite S0228 DNA sequence
          Length = 516

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 54  atatacatgaaactaaaattttg 76
           ||||||| |||||||||||||||
Sbjct: 219 atatacaagaaactaaaattttg 197
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>gb|AC161205.3| Mus musculus chromosome 7, clone RP23-53C15, complete sequence
          Length = 244671

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     aatatacatgaaactaaaa 71
              |||||||||||||||||||
Sbjct: 203449 aatatacatgaaactaaaa 203431
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>emb|CR812476.12| Zebrafish DNA sequence from clone DKEY-60I7 in linkage group 5,
             complete sequence
          Length = 92704

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 53    aatatacatgaaactaaaatttt 75
             |||||| ||||||||||||||||
Sbjct: 40222 aatatatatgaaactaaaatttt 40244
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>emb|Z68012.1|CET24D5 Caenorhabditis elegans Cosmid T24D5, complete sequence
          Length = 37666

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    tacatgaaactaaaatttt 75
             |||||||||||||||||||
Sbjct: 27295 tacatgaaactaaaatttt 27277
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>gb|AC124493.4| Mus musculus BAC clone RP23-462P13 from chromosome 1, complete sequence
          Length = 191967

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 46     agatttaaatatacatgaa 64
              |||||||||||||||||||
Sbjct: 178484 agatttaaatatacatgaa 178502
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>gb|AC125069.4| Mus musculus BAC clone RP23-436E5 from chromosome 2, complete sequence
          Length = 199446

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   aaagattgggaaagaagga 139
             |||||||||||||||||||
Sbjct: 93935 aaagattgggaaagaagga 93953
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>gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosome 1, complete sequence
          Length = 182261

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     agatttaaatatacatgaa 64
              |||||||||||||||||||
Sbjct: 140289 agatttaaatatacatgaa 140271
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>emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in linkage group 12,
             complete sequence
          Length = 187475

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 52    aaatatacatgaaactaaaattt 74
             ||||||||||||||||| |||||
Sbjct: 69840 aaatatacatgaaactataattt 69862
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>emb|BX322650.2| Human DNA sequence from clone RP11-49C9 on chromosome X Contains the 3'
              end of a novel gene and a novel pseudogene, complete
              sequence
          Length = 181175

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 43     gcaagatttaaatatacatgaaa 65
              |||||||||||||||||| ||||
Sbjct: 136697 gcaagatttaaatatacaggaaa 136719
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>emb|AL451166.16| Human DNA sequence from clone RP11-157D6 on chromosome 6, complete
             sequence
          Length = 63006

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 126   ttgggaaagaaggaaggta 144
             |||||||||||||||||||
Sbjct: 52766 ttgggaaagaaggaaggta 52784
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>emb|AL355586.27| Human DNA sequence from clone RP11-59I9 on chromosome 6q16.3-21 Contains
              two novel genes, the 3' end of the C6orf210 gene for
              chromosome 6 open reading frame 210 and three CpG islands,
              complete sequence
          Length = 185311

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     caagatttaaatatacatg 62
              |||||||||||||||||||
Sbjct: 106832 caagatttaaatatacatg 106814
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>emb|AL158847.22| Human DNA sequence from clone RP4-735C1 on chromosome 1 Contains the 3'
             end of the GSTM5 gene for glutathione S-transferase M5,
             the GSTM3 gene for glutathione S-transferase M3 (brain),
             the EPS8L3 gene for EPS8-like 3, the 3' end of a novel
             gene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex
             5 13kDa (NDUFA5) pseudogene and the 5' end of a novel
             gene, complete sequence
          Length = 133451

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     agttgcaggcagtgactaa 24
             |||||||||||||||||||
Sbjct: 82119 agttgcaggcagtgactaa 82101
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>emb|AL136441.16| Human DNA sequence from clone RP11-19D22 on chromosome 13q22.1-22.3
             Contains a CpG island, complete sequence
          Length = 180992

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    cacatggaaaaaataccac 112
             |||||||||||||||||||
Sbjct: 45010 cacatggaaaaaataccac 44992
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>gb|AC117459.6| Homo sapiens 3 BAC RP11-343L17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153618

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    atatacatgaaactaaaat 72
             |||||||||||||||||||
Sbjct: 22615 atatacatgaaactaaaat 22633
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>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence
          Length = 249021

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    ttgggaaagaaggaaggta 144
              |||||||||||||||||||
Sbjct: 117821 ttgggaaagaaggaaggta 117803
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>emb|BX120006.15| Zebrafish DNA sequence from clone DKEYP-21H4 in linkage group 3,
             complete sequence
          Length = 196854

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 48    atttaaatatacatgaaactaaaattt 74
             |||||||||||||| ||||||| ||||
Sbjct: 70124 atttaaatatacattaaactaacattt 70098
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>gb|AC125062.5| Mus musculus BAC clone RP23-419P12 from chromosome 5, complete sequence
          Length = 187329

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     ttaaatatacatgaaacta 68
              |||||||||||||||||||
Sbjct: 160040 ttaaatatacatgaaacta 160058
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>emb|BX548251.5| Zebrafish DNA sequence from clone BUSM1-127I14, complete sequence
          Length = 115316

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 48   atttaaatatacatgaaactaaaattt 74
            |||||||||||||| ||||||| ||||
Sbjct: 9112 atttaaatatacattaaactaacattt 9086
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>gb|AC092860.39| Pan troglodytes clone rp43-125j14, complete sequence
          Length = 160656

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 6      agttgcaggcagtgactaa 24
              |||||||||||||||||||
Sbjct: 126836 agttgcaggcagtgactaa 126818
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>gb|AC067747.7| Homo sapiens chromosome 10 clone RP11-406H21, complete sequence
          Length = 147280

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     gaaggataggcacatggaa 102
              |||||||||||||||||||
Sbjct: 120516 gaaggataggcacatggaa 120498
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>gb|AC097501.3| Homo sapiens BAC clone RP11-340A13 from 4, complete sequence
          Length = 173099

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 53     aatatacatgaaactaaaattttgaga 79
              ||||||||||||| ||| |||||||||
Sbjct: 164711 aatatacatgaaaataacattttgaga 164685
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>gb|AC069494.8| Homo sapiens chromosome 18, clone RP11-743K16, complete sequence
          Length = 179544

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    atacatgaaactaaaattt 74
             |||||||||||||||||||
Sbjct: 87772 atacatgaaactaaaattt 87754
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>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds
          Length = 304837

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     catgaaactaaaattttga 77
              |||||||||||||||||||
Sbjct: 150878 catgaaactaaaattttga 150896
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>gb|AC154711.2| Mus musculus BAC clone RP24-359E16 from chromosome 16, complete sequence
          Length = 199681

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     agtgactaaaacaatcata 34
              |||||||||||||||||||
Sbjct: 117787 agtgactaaaacaatcata 117805
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>dbj|AK048285.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130046I06 product:unclassifiable, full
            insert sequence
          Length = 2854

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 16   agtgactaaaacaatcata 34
            |||||||||||||||||||
Sbjct: 1886 agtgactaaaacaatcata 1868
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>gb|AC108017.4| Homo sapiens BAC clone CTD-2005A22 from 4, complete sequence
          Length = 51343

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 115   aaggaaaaagattgggaaagaag 137
             ||||||||||| |||||||||||
Sbjct: 35783 aaggaaaaagactgggaaagaag 35805
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>gb|AC012152.13| Homo sapiens 3 BAC CTC-552C10 (Cal Tech Human BAC Library C) complete
             sequence
          Length = 180194

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    atttaaatatacatgaaac 66
             |||||||||||||||||||
Sbjct: 77383 atttaaatatacatgaaac 77365
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>gb|AC012001.6| Homo sapiens BAC clone RP11-465G21 from 2, complete sequence
          Length = 151336

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    tacatgaaactaaaatttt 75
             |||||||||||||||||||
Sbjct: 92373 tacatgaaactaaaatttt 92391
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>gb|AC092058.3| Homo sapiens chromosome 3 clone RP11-667E17, complete sequence
          Length = 200898

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 103    aaaataccacacaaggaaaaaga 125
              ||||||| |||||||||||||||
Sbjct: 120601 aaaatactacacaaggaaaaaga 120623
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>emb|BX323812.10| Zebrafish DNA sequence from clone CH211-150H8 in linkage group 2,
            complete sequence
          Length = 153556

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 50   ttaaatatacatgaaactaaaat 72
            |||||||||||| ||||||||||
Sbjct: 2187 ttaaatatacataaaactaaaat 2209
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>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
             sequence
          Length = 173896

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 126   ttgggaaagaaggaaggta 144
             |||||||||||||||||||
Sbjct: 43838 ttgggaaagaaggaaggta 43820
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>emb|CT025521.10| Mouse DNA sequence from clone RP23-337J16 on chromosome 16, complete
             sequence
          Length = 200017

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 119   aaaaagattgggaaagaaggaag 141
             |||| ||||||||||||||||||
Sbjct: 84389 aaaatgattgggaaagaaggaag 84367
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>gb|AC121815.4| Mus musculus BAC clone RP23-458C8 from 7, complete sequence
          Length = 173154

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     aatatacatgaaactaaaa 71
              |||||||||||||||||||
Sbjct: 150134 aatatacatgaaactaaaa 150152
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>emb|AL929150.12| Zebrafish DNA sequence from clone CH211-196H16 in linkage group 1,
              complete sequence
          Length = 229480

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     cagtgactaaaacaatcat 33
              |||||||||||||||||||
Sbjct: 163778 cagtgactaaaacaatcat 163760
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>emb|AJ811455.1| Human adenovirus type 38 partial Y(gamma)-determinant gene for
           fiber protein, strain LJ
          Length = 920

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 35  ggagggttgcaagatttaa 53
           |||||||||||||||||||
Sbjct: 172 ggagggttgcaagatttaa 190
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>emb|AL928721.5| Mouse DNA sequence from clone RP23-402N20 on chromosome 2, complete
             sequence
          Length = 79405

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   aaagattgggaaagaagga 139
             |||||||||||||||||||
Sbjct: 14769 aaagattgggaaagaagga 14787
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>emb|AL662895.7| Mouse DNA sequence from clone RP23-340L19 on chromosome 11, complete
             sequence
          Length = 214811

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 90    taggcacatggaaaaaata 108
             |||||||||||||||||||
Sbjct: 92501 taggcacatggaaaaaata 92483
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>emb|AL672286.9| Mouse DNA sequence from clone RP23-48B17 on chromosome X, complete
             sequence
          Length = 209697

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 102   aaaaataccacacaaggaaaaag 124
             ||||||||||||||||| |||||
Sbjct: 45348 aaaaataccacacaaggtaaaag 45326
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>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete
              sequence
          Length = 223854

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     aaatatacatgaaactaaa 70
              |||||||||||||||||||
Sbjct: 165756 aaatatacatgaaactaaa 165738
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>gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172649

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    catgaaactaaaattttga 77
             |||||||||||||||||||
Sbjct: 58074 catgaaactaaaattttga 58056
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>emb|AL831760.3| Mouse DNA sequence from clone RP23-382F2 on chromosome X, complete
             sequence
          Length = 138140

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    ataggcacatggaaaaaat 107
             |||||||||||||||||||
Sbjct: 84584 ataggcacatggaaaaaat 84566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,277,757
Number of Sequences: 3902068
Number of extensions: 2277757
Number of successful extensions: 198299
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 198007
Number of HSP's gapped (non-prelim): 292
length of query: 144
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 123
effective length of database: 17,151,101,840
effective search space: 2109585526320
effective search space used: 2109585526320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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