ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAAL_RHOBA (Q7USI0) Carboxylate-amine ligase RB4485 (EC 6.3.-.-) 27 9.5

>CAAL_RHOBA (Q7USI0) Carboxylate-amine ligase RB4485 (EC 6.3.-.-)|
          Length = 372

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 116 INKNGKNGSRKQHPKILNLLHLPKIRNASHLISSL 220
           I +NG  GS + H +I + LHL +I  AS + SSL
Sbjct: 35  IRRNG--GSEEAHSEIQHELHLNQIEMASDVCSSL 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,941,715
Number of Sequences: 219361
Number of extensions: 652152
Number of successful extensions: 1546
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top