Clone Name | rbart12c04 |
---|---|
Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 90.1 bits (222), Expect = 1e-18 Identities = 47/59 (79%), Positives = 51/59 (86%), Gaps = 1/59 (1%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDSPDGDEVIPGAEEVAAAE 214 FPLQNV+VRKVKILKAPKFDLGKLMEVHGDY KED+G KLD P DE + G +EVAAAE Sbjct: 204 FPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 86.7 bits (213), Expect = 1e-17 Identities = 42/57 (73%), Positives = 47/57 (82%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEEVAAA 217 +PLQNV++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLD P +E P A EV A Sbjct: 204 YPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 82.8 bits (203), Expect = 2e-16 Identities = 38/56 (67%), Positives = 44/56 (78%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEEVAA 220 +PLQNV++RKVKILKAPKFDLGKLMEVHGDY ED+G KLD P + V E + A Sbjct: 204 YPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 79.0 bits (193), Expect = 3e-15 Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 1/58 (1%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDSPDGDEVIPGAEEVAAA 217 +PLQNV++RKVKILKAPKFDLGKLMEVHGDY EDVGVK+D P + ++ E+ A Sbjct: 204 YPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 77.4 bits (189), Expect = 8e-15 Identities = 40/58 (68%), Positives = 46/58 (79%), Gaps = 1/58 (1%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDSPDGDEVIPGAEEVAAA 217 +PLQNV++RKVKILKAPKFDL KLMEVHGDY EDVGVK+D P DEV+ E+ A Sbjct: 205 YPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 66.6 bits (161), Expect = 1e-11 Identities = 29/39 (74%), Positives = 35/39 (89%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271 +PLQ+ ++RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 202 YPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 56.2 bits (134), Expect = 2e-08 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 9/55 (16%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDSPDGDE 250 +PL +VYVRKVK+LK PKF+LGKLME+HG+ +D G K++ DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 56.2 bits (134), Expect = 2e-08 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 9/55 (16%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDSPDGDE 250 +PL +VYVRKVK+LK PKF+LGKLME+HG+ +D G K++ DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 55.5 bits (132), Expect = 3e-08 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 10/56 (17%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD----------YKEDVGVKLDSPDGDE 250 +PL +VYVRKVK+LK PKF+LGKLME+HG+ + D G K++ DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 55.5 bits (132), Expect = 3e-08 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 55.5 bits (132), Expect = 3e-08 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 55.5 bits (132), Expect = 3e-08 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 55.5 bits (132), Expect = 3e-08 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250 +PL +VYVRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 54.7 bits (130), Expect = 5e-08 Identities = 27/39 (69%), Positives = 32/39 (82%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271 FPLQNV VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 204 FPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 54.7 bits (130), Expect = 5e-08 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDS 265 +PLQNV+VRKVKILKAPK D KL+E+HG+ +DVG K+ S Sbjct: 204 YPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKVIS 243
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 54.3 bits (129), Expect = 7e-08 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 201 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 53.9 bits (128), Expect = 9e-08 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 53.9 bits (128), Expect = 9e-08 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250 +PL +V+VRKVK+LK PKF+LGKLME+HG+ ++ G K++ DG E Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 52.8 bits (125), Expect = 2e-07 Identities = 26/48 (54%), Positives = 34/48 (70%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVI 244 FPLQN++VRKVK+LK PKFD+G LM +HG+ + K S DEV+ Sbjct: 204 FPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDEVL 251
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 52.0 bits (123), Expect = 3e-07 Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDSPDGDEVI 244 FPLQNV++RKVK+LK PKFD G L+ +HG+ E+ G K+ S D V+ Sbjct: 204 FPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 51.6 bits (122), Expect = 5e-07 Identities = 25/48 (52%), Positives = 34/48 (70%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVI 244 FPLQN++VRKVK+LK PKFD+G LM +HG+ + K + DEV+ Sbjct: 204 FPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDEVL 251
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 8/54 (14%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDSPDGDE 250 +PL +VY+RKVK+LK P+FD+ KL+E+HGD G +D P+G E Sbjct: 207 YPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 51.2 bits (121), Expect = 6e-07 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 2/48 (4%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDSPDGDE 250 +PLQ VY+RKVKI+K PK DLG+L ++HGD G K+D PD E Sbjct: 202 YPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/47 (46%), Positives = 32/47 (68%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEV 247 +PL +V + KVK+LK PKFD+GKLME+HG+ + S G++V Sbjct: 204 YPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKV 250
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 50.4 bits (119), Expect = 1e-06 Identities = 20/30 (66%), Positives = 26/30 (86%) Frame = -2 Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD 298 +PL +VY+RKVK+LK P+FDL LME+HGD Sbjct: 207 YPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>YR297_MIMIV (Q5UPY3) Hypothetical protein R297| Length = 168 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +3 Query: 99 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 206 ++Y+ NQP++L T+ P ++ + + + N +FY Sbjct: 80 KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115
>DPO1_BACSU (O34996) DNA polymerase I (EC 2.7.7.7) (POL I)| Length = 880 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = -2 Query: 333 FDLGKLMEVHGDYKEDVGVKLDS-PDGDEVIPGAEEVAAAE*KNRSRYFAASYLEDDICA 157 FD GK HG +KE G + + P+ E +P E+ A SRY Y DDI Sbjct: 60 FDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDA--YQISRYELEQYEADDIIG 117 Query: 156 T 154 T Sbjct: 118 T 118
>IF2P_METMP (Q6M0I6) Probable translation initiation factor IF-2| Length = 598 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = -2 Query: 372 VYVRKVKILKAPKFDLGKLMEVHGDYKED------VGVKLDSPDGDEVIPGA 235 V V K+K L PK +L ++ + +K GVK+ +PD D VI G+ Sbjct: 274 VLVSKIKALLKPK-ELDEMRDPKDKFKPSKQISAATGVKISAPDLDSVIAGS 324
>HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic subunit (EC| 2.3.1.48) (HAT B) Length = 467 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +3 Query: 144 TTPRWHIYHLLDKKQQNSD 200 T P WH+Y L+ KK++ D Sbjct: 203 TDPDWHLYLLIQKKEEKED 221
>KPCD_RAT (P09215) Protein kinase C delta type (EC 2.7.11.13) (nPKC-delta)| Length = 673 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Frame = -2 Query: 231 EVAAAE*KNRSRYFAASYL-------EDDICATWVS*TL*SVLMADFLSTSVDIPSQRST 73 +V AE K + RYFA YL +DD+ T V + ++ + T + Q Sbjct: 360 KVLLAELKGKERYFAIKYLKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLICTFQTKD 419 Query: 72 ILFCSCYFLDGG 37 LF FL+GG Sbjct: 420 HLFFVMEFLNGG 431
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -2 Query: 324 GKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEE 229 GK+M + G Y+ +G +D PDG E PG+ E Sbjct: 327 GKVMGICGGYQM-LGKTIDDPDGVEGEPGSSE 357
>Y241_MYCGE (P47483) Hypothetical protein MG241| Length = 620 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +3 Query: 99 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQ---NSDFYFS 212 +KYS NQP KL+ T +Y L K++Q +DF+F+ Sbjct: 322 EKYSTNQPQKLSLNST-----VYVLQTKQKQFFLKNDFFFN 357
>XRN1_HUMAN (Q8IZH2) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand-exchange| protein 1 homolog) Length = 1706 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = -2 Query: 324 GKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEEVAAAE--*KNRSRYFAASYLE 172 G HGD+K +VG+ L +E +PG + +E + + A YLE Sbjct: 940 GSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLE 992 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,862,934 Number of Sequences: 219361 Number of extensions: 740157 Number of successful extensions: 1872 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 1823 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1869 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)