ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein) 90 1e-18
2RS3A_HELAN (P49198) 40S ribosomal protein S3a 87 1e-17
3RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein) 83 2e-16
4RS3A_ARATH (Q42262) 40S ribosomal protein S3a 79 3e-15
5RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific ... 77 8e-15
6RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a 67 1e-11
7RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a 56 2e-08
8RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformat... 56 2e-08
9RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a 55 3e-08
10RS3A_XENTR (Q642T2) 40S ribosomal protein S3a 55 3e-08
11RS3A_XENLA (Q801S3) 40S ribosomal protein S3a 55 3e-08
12RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a 55 3e-08
13RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a) 55 3e-08
14RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A) 55 5e-08
15RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A) 55 5e-08
16RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a 54 7e-08
17RS3A_HUMAN (P61247) 40S ribosomal protein S3a 54 7e-08
18RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a 54 7e-08
19RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a 54 7e-08
20RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment) 54 7e-08
21RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformatio... 54 9e-08
22RS3A_MOUSE (P97351) 40S ribosomal protein S3a 54 9e-08
23RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B) 53 2e-07
24RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1) 52 3e-07
25RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A) 52 5e-07
26RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein) 52 5e-07
27RS3A_CAEEL (P48154) 40S ribosomal protein S3a 51 6e-07
28RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich prote... 50 1e-06
29RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein) 50 1e-06
30YR297_MIMIV (Q5UPY3) Hypothetical protein R297 28 4.1
31DPO1_BACSU (O34996) DNA polymerase I (EC 2.7.7.7) (POL I) 28 5.3
32IF2P_METMP (Q6M0I6) Probable translation initiation factor IF-2 28 7.0
33HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic s... 28 7.0
34KPCD_RAT (P09215) Protein kinase C delta type (EC 2.7.11.13) (nP... 28 7.0
35COBQ_VIBPA (Q87HN1) Cobyric acid synthase 28 7.0
36Y241_MYCGE (P47483) Hypothetical protein MG241 28 7.0
37XRN1_HUMAN (Q8IZH2) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Stran... 27 9.1

>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 261

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 47/59 (79%), Positives = 51/59 (86%), Gaps = 1/59 (1%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDSPDGDEVIPGAEEVAAAE 214
           FPLQNV+VRKVKILKAPKFDLGKLMEVHGDY KED+G KLD P  DE + G +EVAAAE
Sbjct: 204 FPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261



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>RS3A_HELAN (P49198) 40S ribosomal protein S3a|
          Length = 259

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 42/57 (73%), Positives = 47/57 (82%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEEVAAA 217
           +PLQNV++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLD P  +E  P A EV  A
Sbjct: 204 YPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259



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>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 259

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 38/56 (67%), Positives = 44/56 (78%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEEVAA 220
           +PLQNV++RKVKILKAPKFDLGKLMEVHGDY ED+G KLD P  + V    E + A
Sbjct: 204 YPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259



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>RS3A_ARATH (Q42262) 40S ribosomal protein S3a|
          Length = 261

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 38/58 (65%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDSPDGDEVIPGAEEVAAA 217
           +PLQNV++RKVKILKAPKFDLGKLMEVHGDY  EDVGVK+D P  + ++    E+  A
Sbjct: 204 YPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261



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>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein|
           BIS289)
          Length = 261

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 40/58 (68%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDSPDGDEVIPGAEEVAAA 217
           +PLQNV++RKVKILKAPKFDL KLMEVHGDY  EDVGVK+D P  DEV+    E+  A
Sbjct: 205 YPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261



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>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a|
          Length = 247

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 29/39 (74%), Positives = 35/39 (89%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271
           +PLQ+ ++RKVKILKAPKFDL KLMEVHGDY E+VG K+
Sbjct: 202 YPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240



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>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a|
          Length = 265

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 9/55 (16%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDSPDGDE 250
           +PL +VYVRKVK+LK PKF+LGKLME+HG+           +D G K++  DG E
Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258



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>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector|
           protein)
          Length = 265

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 9/55 (16%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDSPDGDE 250
           +PL +VYVRKVK+LK PKF+LGKLME+HG+           +D G K++  DG E
Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258



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>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a|
          Length = 266

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 10/56 (17%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD----------YKEDVGVKLDSPDGDE 250
           +PL +VYVRKVK+LK PKF+LGKLME+HG+           + D G K++  DG E
Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259



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>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a|
          Length = 263

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250
           +PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256



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>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a|
          Length = 263

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250
           +PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256



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>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a|
          Length = 263

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250
           +PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256



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>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)|
          Length = 263

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250
           +PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256



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>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)|
          Length = 251

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 27/39 (69%), Positives = 32/39 (82%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 271
           FPLQNV VRKVKILKAPK D  KL+E+HG+  +DVG K+
Sbjct: 204 FPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241



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>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)|
          Length = 251

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDS 265
           +PLQNV+VRKVKILKAPK D  KL+E+HG+  +DVG K+ S
Sbjct: 204 YPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKVIS 243



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>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a|
          Length = 263

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250
           +PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256



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>RS3A_HUMAN (P61247) 40S ribosomal protein S3a|
          Length = 263

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250
           +PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256



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>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a|
          Length = 263

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250
           +PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256



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>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a|
          Length = 263

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250
           +PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256



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>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)|
          Length = 260

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDSPDGDE 250
           +PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 201 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253



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>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector|
           protein) [Contains: 40S ribosomal protein S3b]
          Length = 263

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250
           +PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256



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>RS3A_MOUSE (P97351) 40S ribosomal protein S3a|
          Length = 263

 Score = 53.9 bits (128), Expect = 9e-08
 Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 7/53 (13%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDSPDGDE 250
           +PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G K++  DG E
Sbjct: 204 YPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256



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>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)|
          Length = 254

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 26/48 (54%), Positives = 34/48 (70%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVI 244
           FPLQN++VRKVK+LK PKFD+G LM +HG+   +   K  S   DEV+
Sbjct: 204 FPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVSGFKDEVL 251



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>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)|
          Length = 255

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDSPDGDEVI 244
           FPLQNV++RKVK+LK PKFD G L+ +HG+   E+ G K+ S   D V+
Sbjct: 204 FPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252



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>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)|
          Length = 254

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 25/48 (52%), Positives = 34/48 (70%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEVI 244
           FPLQN++VRKVK+LK PKFD+G LM +HG+   +   K  +   DEV+
Sbjct: 204 FPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDEVL 251



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>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)|
          Length = 267

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 8/54 (14%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDSPDGDE 250
           +PL +VY+RKVK+LK P+FD+ KL+E+HGD             G  +D P+G E
Sbjct: 207 YPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260



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>RS3A_CAEEL (P48154) 40S ribosomal protein S3a|
          Length = 256

 Score = 51.2 bits (121), Expect = 6e-07
 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDSPDGDE 250
           +PLQ VY+RKVKI+K PK DLG+L ++HGD       G K+D PD  E
Sbjct: 202 YPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249



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>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)|
          Length = 264

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDSPDGDEV 247
           +PL +V + KVK+LK PKFD+GKLME+HG+        + S  G++V
Sbjct: 204 YPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKV 250



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>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)|
          Length = 268

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = -2

Query: 387 FPLQNVYVRKVKILKAPKFDLGKLMEVHGD 298
           +PL +VY+RKVK+LK P+FDL  LME+HGD
Sbjct: 207 YPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236



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>YR297_MIMIV (Q5UPY3) Hypothetical protein R297|
          Length = 168

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 99  QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 206
           ++Y+ NQP++L T+   P ++  +  + +  N +FY
Sbjct: 80  KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115



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>DPO1_BACSU (O34996) DNA polymerase I (EC 2.7.7.7) (POL I)|
          Length = 880

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 333 FDLGKLMEVHGDYKEDVGVKLDS-PDGDEVIPGAEEVAAAE*KNRSRYFAASYLEDDICA 157
           FD GK    HG +KE  G +  + P+  E +P   E+  A     SRY    Y  DDI  
Sbjct: 60  FDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDA--YQISRYELEQYEADDIIG 117

Query: 156 T 154
           T
Sbjct: 118 T 118



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>IF2P_METMP (Q6M0I6) Probable translation initiation factor IF-2|
          Length = 598

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = -2

Query: 372 VYVRKVKILKAPKFDLGKLMEVHGDYKED------VGVKLDSPDGDEVIPGA 235
           V V K+K L  PK +L ++ +    +K         GVK+ +PD D VI G+
Sbjct: 274 VLVSKIKALLKPK-ELDEMRDPKDKFKPSKQISAATGVKISAPDLDSVIAGS 324



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>HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic subunit (EC|
           2.3.1.48) (HAT B)
          Length = 467

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 144 TTPRWHIYHLLDKKQQNSD 200
           T P WH+Y L+ KK++  D
Sbjct: 203 TDPDWHLYLLIQKKEEKED 221



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>KPCD_RAT (P09215) Protein kinase C delta type (EC 2.7.11.13) (nPKC-delta)|
          Length = 673

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -2

Query: 231 EVAAAE*KNRSRYFAASYL-------EDDICATWVS*TL*SVLMADFLSTSVDIPSQRST 73
           +V  AE K + RYFA  YL       +DD+  T V   + ++   +   T +    Q   
Sbjct: 360 KVLLAELKGKERYFAIKYLKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLICTFQTKD 419

Query: 72  ILFCSCYFLDGG 37
            LF    FL+GG
Sbjct: 420 HLFFVMEFLNGG 431



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>COBQ_VIBPA (Q87HN1) Cobyric acid synthase|
          Length = 483

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 324 GKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEE 229
           GK+M + G Y+  +G  +D PDG E  PG+ E
Sbjct: 327 GKVMGICGGYQM-LGKTIDDPDGVEGEPGSSE 357



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>Y241_MYCGE (P47483) Hypothetical protein MG241|
          Length = 620

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 99  QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQ---NSDFYFS 212
           +KYS NQP KL+   T     +Y L  K++Q    +DF+F+
Sbjct: 322 EKYSTNQPQKLSLNST-----VYVLQTKQKQFFLKNDFFFN 357



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>XRN1_HUMAN (Q8IZH2) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand-exchange|
            protein 1 homolog)
          Length = 1706

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 324  GKLMEVHGDYKEDVGVKLDSPDGDEVIPGAEEVAAAE--*KNRSRYFAASYLE 172
            G     HGD+K +VG+ L     +E +PG  +   +E    + +    A YLE
Sbjct: 940  GSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLE 992


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,862,934
Number of Sequences: 219361
Number of extensions: 740157
Number of successful extensions: 1872
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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