ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart12c03 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 176 bits (446), Expect = 4e-44 Identities = 93/107 (86%), Positives = 99/107 (92%), Gaps = 1/107 (0%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 QASQIRQIRRKMVEIM NQA+SCDLKELV+KFIPEVIGKEIEKATSSIFPLQNV+VRKVK Sbjct: 156 QASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 214 ILKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 216 ILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 161 bits (407), Expect = 1e-39 Identities = 82/105 (78%), Positives = 91/105 (86%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+SQI+QIRRKM EIMV QA +CDLKELV KFIPE IG+EIEKATSSI+PLQNV++RKVK Sbjct: 156 QSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 217 ILKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 216 ILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 160 bits (406), Expect = 2e-39 Identities = 80/104 (76%), Positives = 89/104 (85%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+SQIRQIRRKM EIMVNQA SCDLK+LV KFIPE IG+EIEKATSSI+PLQNV++RKVK Sbjct: 156 QSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 220 ILKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 216 ILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 152 bits (385), Expect = 4e-37 Identities = 77/106 (72%), Positives = 89/106 (83%), Gaps = 1/106 (0%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+SQIRQIRRKM EIMV +A+SCDLKELV KFIPE IG+EIEKAT I+PLQNV++RKVK Sbjct: 156 QSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 217 ILKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 216 ILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 142 bits (359), Expect = 4e-34 Identities = 77/107 (71%), Positives = 88/107 (82%), Gaps = 2/107 (1%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQ-AASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKV 355 Q+SQIRQIR KM EIM+ + A+SCDLKELV KFIPE IGK+IEKAT I+PLQNV++RKV Sbjct: 156 QSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKV 215 Query: 354 KILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 217 KILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 216 KILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 119 bits (297), Expect = 7e-27 Identities = 63/88 (71%), Positives = 74/88 (84%), Gaps = 1/88 (1%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSS-IFPLQNVYVRKV 355 Q+SQI IRRKM EIMV +A +CDLKELV KFIPEVIGKEI++ S I+PLQ+ ++RKV Sbjct: 154 QSSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKV 212 Query: 354 KILKAPKFDLGKLMEVHGDYKEDVGVKL 271 KILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 213 KILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 115 bits (288), Expect = 7e-26 Identities = 57/87 (65%), Positives = 72/87 (82%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+SQIR IR+KM +++ NQ +SC ++ELV K IPEVIG+EIE+AT SIFPLQNV VRKVK Sbjct: 156 QSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYKEDVGVKL 271 ILKAPK D KL+E+HG+ +DVG K+ Sbjct: 216 ILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 114 bits (286), Expect = 1e-25 Identities = 58/101 (57%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KMVEIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 114 bits (285), Expect = 2e-25 Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 9/103 (8%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 114 bits (284), Expect = 2e-25 Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 9/103 (8%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 113 bits (283), Expect = 3e-25 Identities = 57/101 (56%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 113 bits (282), Expect = 4e-25 Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 10/104 (9%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ +GK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (281), Expect = 5e-25 Identities = 57/101 (56%), Positives = 74/101 (73%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 112 bits (281), Expect = 5e-25 Identities = 57/101 (56%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +VYVRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 112 bits (280), Expect = 6e-25 Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 153 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 212 Query: 351 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 213 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (280), Expect = 6e-25 Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (280), Expect = 6e-25 Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (280), Expect = 6e-25 Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 112 bits (279), Expect = 8e-25 Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 112 bits (279), Expect = 8e-25 Identities = 56/101 (55%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK+IEKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 111 bits (277), Expect = 1e-24 Identities = 55/87 (63%), Positives = 71/87 (81%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+SQIR I +KM +++ NQA C +KELV K IPEVIG+ IEKAT++I+PLQNV+VRKVK Sbjct: 156 QSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYKEDVGVKL 271 ILKAPK D KL+E+HG+ +DVG K+ Sbjct: 216 ILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 111 bits (277), Expect = 1e-24 Identities = 55/101 (54%), Positives = 75/101 (74%), Gaps = 7/101 (6%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q Q+RQIR+KM+EIM + + DLKE+VNK IP+ IGK++EKA SI+PL +V+VRKVK Sbjct: 156 QHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 250 +LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 216 MLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 102 bits (254), Expect = 7e-22 Identities = 51/102 (50%), Positives = 72/102 (70%), Gaps = 8/102 (7%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q +Q++ IR+KMVEI+ + +S D+KE+VNK IP+ IGK+IEK+ I+PL +V + KVK Sbjct: 156 QHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 250 +LK PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 216 VLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 102 bits (254), Expect = 7e-22 Identities = 49/97 (50%), Positives = 73/97 (75%), Gaps = 1/97 (1%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+S++R+ R+KM+EI+ + ++C L +L +K IPEVIG+EIEK+T +IFPLQNV++RKVK Sbjct: 156 QSSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 244 +LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 216 LLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 99.0 bits (245), Expect = 7e-21 Identities = 49/96 (51%), Positives = 68/96 (70%), Gaps = 2/96 (2%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 + S+IR+IR +M+ + + CDLKE+V+K IP+ IGK+IEK S ++PLQ VY+RKVK Sbjct: 154 KTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVK 213 Query: 351 ILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 250 I+K PK DLG+L ++HGD G K+DRPD E Sbjct: 214 IIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 97.4 bits (241), Expect = 2e-20 Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 8/102 (7%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q SQ+R+IR +M +I+ N+ + DLK+LVNK + I K+IEK+ I+PL +VY+RKVK Sbjct: 159 QQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVK 218 Query: 351 ILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 250 +LK P+FD+ KL+E+HGD G +DRP+G E Sbjct: 219 VLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 92.8 bits (229), Expect = 5e-19 Identities = 44/78 (56%), Positives = 58/78 (74%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+S IR IR+ + EI+ + + L +L +K IPEVI KEIE AT IFPLQN++VRKVK Sbjct: 156 QSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD 298 +LK PKFD+G LM +HG+ Sbjct: 216 LLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 92.4 bits (228), Expect = 7e-19 Identities = 44/78 (56%), Positives = 57/78 (73%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q+S IR IR+ + EI+ + L +L +K IPEVI KEIE AT IFPLQN++VRKVK Sbjct: 156 QSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVK 215 Query: 351 ILKAPKFDLGKLMEVHGD 298 +LK PKFD+G LM +HG+ Sbjct: 216 LLKQPKFDVGALMALHGE 233
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 90.1 bits (222), Expect = 3e-18 Identities = 42/78 (53%), Positives = 56/78 (71%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q SQI+ IR KM I+ + S DLK +V K +P+ I K+IEKA ++PL +VY+RKVK Sbjct: 159 QHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVK 218 Query: 351 ILKAPKFDLGKLMEVHGD 298 +LK P+FDL LME+HGD Sbjct: 219 VLKKPRFDLSSLMELHGD 236
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/66 (36%), Positives = 38/66 (57%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 130 QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIYPLRKAEIRKIK 189 Query: 351 ILKAPK 334 +L+ P+ Sbjct: 190 VLEEPQ 195
>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae| Length = 199 Score = 46.2 bits (108), Expect = 6e-05 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 131 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEAKKIYPLKKAEIRKIK 190 Query: 351 ILKAPK 334 +L P+ Sbjct: 191 VLGEPE 196
>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae| Length = 199 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/66 (36%), Positives = 37/66 (56%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q SQ R IR+ M EI+ +A + K+ V + + I EI K I+PL+ +RK+K Sbjct: 132 QTSQERAIRKIMQEIIYKKAEELNFKDFVLEAVNGKIAAEIAKEGKKIYPLKKAEIRKIK 191 Query: 351 ILKAPK 334 +L P+ Sbjct: 192 VLGEPE 197
>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae| Length = 211 Score = 42.7 bits (99), Expect = 6e-04 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIP----EVIGKEIEKATSSIFPLQNVYV 364 + SQ R IR++M +++ A CD E + + + E I ++I++A I+P++ + Sbjct: 123 KTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSISEEESIPEQIKEAGRKIYPIRQAEI 182 Query: 363 RKVKILKAP 337 RK ++L+ P Sbjct: 183 RKTEVLEEP 191
>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae| Length = 200 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 Q SQ R IR+ + +I+ +A + + V + + I EI K I+P++ VRK+K Sbjct: 134 QTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIK 193 Query: 351 ILKAP 337 +L P Sbjct: 194 VLAEP 198
>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae| Length = 211 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/65 (30%), Positives = 38/65 (58%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 + SQ R IR M +I+V +A+S + + + + + + EI K I+P++ V +RK++ Sbjct: 133 KTSQKRAIRAIMRQIVVEKASSLNFVQFLQECVLGKVPAEIYKNAKKIYPIRRVEIRKIE 192 Query: 351 ILKAP 337 +L P Sbjct: 193 LLAEP 197
>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae| Length = 221 Score = 39.3 bits (90), Expect = 0.007 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = -1 Query: 525 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 346 +Q +R+KM+E +V +AA D + + + + + ++ I P++ V + K+K+L Sbjct: 141 AQKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVL 200 Query: 345 KAP 337 K P Sbjct: 201 KYP 203
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -1 Query: 525 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 346 SQ IR+ + +I +A D + V I + +I + I+PL+ V + K K+L Sbjct: 133 SQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLL 192 Query: 345 KAPK 334 KAPK Sbjct: 193 KAPK 196
>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae| Length = 203 Score = 38.5 bits (88), Expect = 0.012 Identities = 20/65 (30%), Positives = 36/65 (55%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 ++SQ++ IR MVEI+ +AA D + + + I + I + I+PL+ V +RK + Sbjct: 130 RSSQMQAIREMMVEIVKKRAAESDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTE 189 Query: 351 ILKAP 337 + P Sbjct: 190 VETIP 194
>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae| Length = 193 Score = 37.4 bits (85), Expect = 0.026 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -1 Query: 525 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 346 SQ +IR+ + I+ +A+ E V + + +I + I+PL+ V V K K+L Sbjct: 130 SQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLL 189 Query: 345 KAP 337 KAP Sbjct: 190 KAP 192
>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae| Length = 215 Score = 37.0 bits (84), Expect = 0.034 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = -1 Query: 513 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 334 QIR+ + + ++N+ S E V I + I ++ AT I+PL+ + VRK +++ Sbjct: 137 QIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSELV---- 192 Query: 333 FDLGKLMEVH 304 L + E+H Sbjct: 193 -SLSGISEIH 201
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 37.0 bits (84), Expect = 0.034 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = -1 Query: 525 SQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKIL 346 SQ IR+ + E + +A+ + + + + EI +A I+PL+ + K K+L Sbjct: 131 SQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVL 190 Query: 345 KAPKFDLGKLME 310 K P+ +LGK +E Sbjct: 191 KVPE-NLGKQVE 201
>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae| Length = 204 Score = 36.2 bits (82), Expect = 0.058 Identities = 18/65 (27%), Positives = 36/65 (55%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 ++SQ++ IR MV+I+ +A+ D + + + I + I + I+PL+ V +RK + Sbjct: 130 RSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQ 189 Query: 351 ILKAP 337 + P Sbjct: 190 VEAMP 194
>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae| Length = 213 Score = 34.3 bits (77), Expect = 0.22 Identities = 23/92 (25%), Positives = 43/92 (46%) Frame = -1 Query: 528 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 349 ASQ + IRR M++++ A ++L++ + + I I+PL+ V ++K + Sbjct: 128 ASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTL 187 Query: 348 LKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGD 253 P+ EV + E+ V +D D D Sbjct: 188 EARPE-------EVAAE--EETAVDVDEEDVD 210
>RS3A_METTH (O27630) 30S ribosomal protein S3Ae| Length = 195 Score = 32.7 bits (73), Expect = 0.64 Identities = 18/65 (27%), Positives = 34/65 (52%) Frame = -1 Query: 531 QASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVK 352 ++SQ + +R+ + E + A+ +ELV + I EI I+PL+ V + K + Sbjct: 130 KSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSR 189 Query: 351 ILKAP 337 +L+ P Sbjct: 190 VLEEP 194
>RS3A_METJA (P54059) 30S ribosomal protein S3Ae| Length = 222 Score = 32.3 bits (72), Expect = 0.83 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -1 Query: 522 QIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILK 343 Q IR+KM EI+ A + V + + ++I+ IFP++NV + K ++L Sbjct: 140 QKSDIRKKMEEIIKAMAKEKTFPQYVQAMLFGEMAEKIKNECKKIFPIKNVIIYKSEVLS 199 Query: 342 APK 334 K Sbjct: 200 LAK 202
>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae| Length = 215 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/97 (20%), Positives = 43/97 (44%) Frame = -1 Query: 513 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 334 +IR+ + +V++ + + V I + ++ +AT +I+PL+ + +RK Sbjct: 137 EIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYPLRKIEIRK-------- 188 Query: 333 FDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVA 223 +L+ + G + P +E PG E +A Sbjct: 189 ---SELVSLSG---------MQEPQKNEPAPGGEAIA 213
>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae| Length = 209 Score = 30.4 bits (67), Expect = 3.2 Identities = 13/61 (21%), Positives = 32/61 (52%) Frame = -1 Query: 528 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 349 A++ ++R K++ + + S L EL I + + +I ++P++ + +RK ++ Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190 Query: 348 L 346 L Sbjct: 191 L 191
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 29.6 bits (65), Expect = 5.4 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 426 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 250 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 249 VIPGAEEV 226 + PG ++ Sbjct: 847 LPPGVNQL 854
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 29.6 bits (65), Expect = 5.4 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Frame = -1 Query: 426 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 250 ++GK K + + P + + +R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 249 VIPGAEEV 226 + PG ++ Sbjct: 867 LPPGVNQL 874
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 29.3 bits (64), Expect = 7.1 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -1 Query: 420 GKEIEKATSSIFPLQNVYVRKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 268 G++I+KA I P + LK+ +D GK+M + G Y+ +G +D Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344 Query: 267 RPDGDEVIPGAEE 229 PDG E PG+ E Sbjct: 345 DPDGVEGEPGSSE 357 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,541,768 Number of Sequences: 219361 Number of extensions: 1188204 Number of successful extensions: 3450 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 3269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3438 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
