Clone Name | rbart12c02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474419.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 618 Score = 99.6 bits (50), Expect = 8e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 300 gggcagctgatcctggccctgggcccgggcaccttgaacgcccacaccttgacgcggagc 359 |||||||||||| ||||| |||| ||||| |||||||| ||||| |||||||| | |||| Sbjct: 548 gggcagctgatcttggccttgggtccgggaaccttgaaggcccagaccttgaccctgagc 489 Query: 360 ttggcgttgagcttgacctcga 381 |||||||||||||||||||||| Sbjct: 488 ttggcgttgagcttgacctcga 467
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 228 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 287 |||||||||||||| |||||||| ||| | | ||| ||||||||| | | ||| || Sbjct: 35036536 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 35036595 Query: 288 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 347 |||| || || |||||||||||| ||||| |||| ||||| |||||||| ||||| ||| Sbjct: 35036596 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 35036655 Query: 348 ttgacgcggagcttggcgttgagcttgacctcga 381 ||||| | |||||||||||||||||||||||||| Sbjct: 35036656 ttgaccctgagcttggcgttgagcttgacctcga 35036689 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcgggggcggcgccgccgg 282 |||||||||||||||||||| Sbjct: 34117433 ggcgggggcggcgccgccgg 34117452
>dbj|AK104363.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C10, full insert sequence Length = 1076 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Minus Query: 228 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 287 |||||||||||||| |||||||| ||| | | ||| ||||||||| | | ||| || Sbjct: 746 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 687 Query: 288 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 347 |||| || || |||||||||||| ||||| |||| ||||| |||||||| ||||| ||| Sbjct: 686 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 627 Query: 348 ttgacgcggagcttggcgttgagcttgacctcga 381 ||||| | |||||||||||||||||||||||||| Sbjct: 626 ttgaccctgagcttggcgttgagcttgacctcga 593
>dbj|AK070446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G10, full insert sequence Length = 1128 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Minus Query: 228 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 287 |||||||||||||| |||||||| ||| | | ||| ||||||||| | | ||| || Sbjct: 749 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 690 Query: 288 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 347 |||| || || |||||||||||| ||||| |||| ||||| |||||||| ||||| ||| Sbjct: 689 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 630 Query: 348 ttgacgcggagcttggcgttgagcttgacctcga 381 ||||| | |||||||||||||||||||||||||| Sbjct: 629 ttgaccctgagcttggcgttgagcttgacctcga 596
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete sequence Length = 94152 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 228 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 287 |||||||||||||| |||||||| ||| | | ||| ||||||||| | | ||| || Sbjct: 68254 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 68313 Query: 288 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 347 |||| || || |||||||||||| ||||| |||| ||||| |||||||| ||||| ||| Sbjct: 68314 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 68373 Query: 348 ttgacgcggagcttggcgttgagcttgacctcga 381 ||||| | |||||||||||||||||||||||||| Sbjct: 68374 ttgaccctgagcttggcgttgagcttgacctcga 68407
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 228 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 287 |||||||||||||| |||||||| ||| | | ||| ||||||||| | | ||| || Sbjct: 95583 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 95642 Query: 288 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 347 |||| || || |||||||||||| ||||| |||| ||||| |||||||| ||||| ||| Sbjct: 95643 gggacggtgatggggcagctgatcttggccttgggtccgggaaccttgaaggcccagacc 95702 Query: 348 ttgacgcggagcttggcgttgagcttgacctcga 381 ||||| | |||||||||||||||||||||||||| Sbjct: 95703 ttgaccctgagcttggcgttgagcttgacctcga 95736
>gb|AF039532.1|AF039532 Oryza sativa harpin induced gene 1 homolog (Hin1) mRNA, complete cds Length = 1089 Score = 91.7 bits (46), Expect = 2e-15 Identities = 127/154 (82%) Strand = Plus / Minus Query: 228 aatcagaaccagaccttgcagtccgtgggtttgaaggcgggggcggcgccgccgggggcg 287 |||||||||||||| |||||||| ||| | | ||| ||||||||| | | ||| || Sbjct: 732 aatcagaaccagactttgcagtcggtgcgctggaatgcgggggcgttgggggcggacgct 673 Query: 288 gggatggagagcgggcagctgatcctggccctgggcccgggcaccttgaacgcccacacc 347 |||| || || |||||||||||| ||| | |||| ||||| |||||||| ||||| ||| Sbjct: 672 gggacggtgatggggcagctgatcttgggcttgggtccgggaaccttgaaggcccagacc 613 Query: 348 ttgacgcggagcttggcgttgagcttgacctcga 381 ||||| | |||||||||||||||||||||||||| Sbjct: 612 ttgaccctgagcttggcgttgagcttgacctcga 579
>gb|AY105074.1| Zea mays PCO087822 mRNA sequence Length = 1219 Score = 69.9 bits (35), Expect = 7e-09 Identities = 83/99 (83%) Strand = Plus / Minus Query: 272 ggcgccgccgggggcggggatggagagcgggcagctgatcctggccctgggcccgggcac 331 |||| ||||||| ||||||| ||||||| |||| ||| | | ||| |||||||| | || Sbjct: 865 ggcggcgccgggtgcggggacggagagcttgcaggtgaccttagccttgggcccgcggac 806 Query: 332 cttgaacgcccacaccttgacgcggagcttggcgttgag 370 |||||||||||| ||||| || | ||||||||||||||| Sbjct: 805 cttgaacgcccagaccttcaccctgagcttggcgttgag 767
>ref|XM_609881.2| PREDICTED: Bos taurus transient receptor potential channel 2, transcript variant 1 (TRPC2), mRNA Length = 4062 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 cggatccccaaacgagcaccaaggaa 212 ||||||||||||||| |||||||||| Sbjct: 869 cggatccccaaacgaccaccaaggaa 894
>ref|XM_878752.1| PREDICTED: Bos taurus transient receptor potential channel 2, transcript variant 4 (TRPC2), mRNA Length = 2362 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 cggatccccaaacgagcaccaaggaa 212 ||||||||||||||| |||||||||| Sbjct: 976 cggatccccaaacgaccaccaaggaa 1001
>ref|XM_866589.1| PREDICTED: Bos taurus transient receptor potential channel 2, transcript variant 2 (TRPC2), mRNA Length = 4169 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 cggatccccaaacgagcaccaaggaa 212 ||||||||||||||| |||||||||| Sbjct: 976 cggatccccaaacgaccaccaaggaa 1001
>ref|XM_878689.1| PREDICTED: Bos taurus transient receptor potential channel 2, transcript variant 3 (TRPC2), mRNA Length = 1411 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 187 cggatccccaaacgagcaccaaggaa 212 ||||||||||||||| |||||||||| Sbjct: 976 cggatccccaaacgaccaccaaggaa 1001
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 gcgggggcggcgccgccgggggcgg 288 ||||||||||||||||||| ||||| Sbjct: 22044522 gcgggggcggcgccgccggcggcgg 22044498 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 25756638 ggcggcgccgccgggggcgg 25756619
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 gcgggggcggcgccgccgggggcgg 288 ||||||||||||||||||| ||||| Sbjct: 21972867 gcgggggcggcgccgccggcggcgg 21972843 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 25684814 ggcggcgccgccgggggcgg 25684795
>emb|AL731757.6|CNS08C86 Oryza sativa chromosome 12, . Partial sequence from BAC OJ1281_G01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 69648 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 gcgggggcggcgccgccgggggcgg 288 ||||||||||||||||||| ||||| Sbjct: 14724 gcgggggcggcgccgccggcggcgg 14700
>ref|NM_184524.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1270 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 540 ggcggcgccgccgggggcgg 521
>ref|XM_630731.1| Dictyostelium discoideum hypothetical protein (DDB0188772), partial mRNA Length = 3828 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 atcgatagtagtagtagtat 45 |||||||||||||||||||| Sbjct: 231 atcgatagtagtagtagtat 212
>ref|XM_474268.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcgggggcggcgccgccgg 282 |||||||||||||||||||| Sbjct: 51 ggcgggggcggcgccgccgg 70
>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map near C10769, complete sequence Length = 194856 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tccaactagtaccactagca 83 |||||||||||||||||||| Sbjct: 133594 tccaactagtaccactagca 133613
>gb|BC067003.1| Mus musculus transient receptor potential cation channel, subfamily C, member 2, mRNA (cDNA clone IMAGE:6402564), complete cds Length = 3149 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 1022 gatccccagacgagcaccaaggaa 1045
>ref|NM_005194.2| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta (CEBPB), mRNA Length = 1837 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 1325 cggcgccgccgggggcgggg 1306
>gb|BC021931.1| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta, mRNA (cDNA clone MGC:32080 IMAGE:4870789), complete cds Length = 1848 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 1325 cggcgccgccgggggcgggg 1306
>gb|BC007538.1| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta, mRNA (cDNA clone MGC:15409 IMAGE:3028673), complete cds Length = 1832 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 1310 cggcgccgccgggggcgggg 1291
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 448 gctggccgccgaacgccggcttgaggtc 475 ||||||||||||||||| || ||||||| Sbjct: 1781848 gctggccgccgaacgcctgcgtgaggtc 1781821
>gb|AC131185.4| Mus musculus BAC clone RP23-402H1 from chromosome 19, complete sequence Length = 208584 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 ggcgggggcggcgccgccgggggcgggg 290 ||||||||||| || ||||||||||||| Sbjct: 30520 ggcgggggcggggcggccgggggcgggg 30547
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 374 gacctcgacctcgaccgcccctgccgcc 401 ||||||||||||||||||| | |||||| Sbjct: 68301 gacctcgacctcgaccgccaccgccgcc 68274
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tccaactagtaccactagca 83 |||||||||||||||||||| Sbjct: 29005697 tccaactagtaccactagca 29005678
>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tagtagtagtagtatgtgca 50 |||||||||||||||||||| Sbjct: 120926 tagtagtagtagtatgtgca 120907
>ref|XM_001001606.1| PREDICTED: Mus musculus hypothetical protein LOC668465 (LOC668465), mRNA Length = 432 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 ggcgggggcggcgccgccgggggcgggg 290 ||||||||||| || ||||||||||||| Sbjct: 194 ggcgggggcggggcggccgggggcgggg 167
>ref|XM_541002.2| PREDICTED: Canis familiaris similar to Tyrosine-protein phosphatase, non-receptor type 4 (Protein-tyrosine phosphatase MEG1) (PTPase-MEG1) (MEG), transcript variant 1 (LOC483882), mRNA Length = 3852 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 502 cggcgccgccgggggcgggg 483
>gb|BC005132.2| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta, mRNA (cDNA clone IMAGE:3836438), partial cds Length = 1038 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 508 cggcgccgccgggggcgggg 489
>ref|XM_850164.1| PREDICTED: Canis familiaris similar to Myristoylated alanine-rich C-kinase substrate (MARCKS) (Protein kinase C substrate 80 kDa protein) (LOC612436), mRNA Length = 2893 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 ggcgggggcggcgccgccgggggcgggg 290 ||||||||||||| || ||||||||||| Sbjct: 708 ggcgggggcggcggcggcgggggcgggg 681
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 agcacgtgctggccgccgaa 460 |||||||||||||||||||| Sbjct: 2548397 agcacgtgctggccgccgaa 2548416
>emb|AL161937.13| Human DNA sequence from clone RP11-112L6 on chromosome 20 Contains the CEBPB (CCAAT/enhancer binding protein (C/EBP), beta)) gene, a putative novel gene, ESTs, STSs, GSSs and two CpG islands.n, complete sequence Length = 93399 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 36768 cggcgccgccgggggcgggg 36749
>emb|AL137843.4| Human DNA sequence from clone RP3-377O6 on chromosome Xq22.2-23 Contains a thyroid autoantigen 70kDa (Ku antigen) (G22P1) pseudogene, complete sequence Length = 133402 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 agcaagatctacatacatag 124 |||||||||||||||||||| Sbjct: 52900 agcaagatctacatacatag 52881
>ref|XM_965208.1| PREDICTED: Tribolium castaneum similar to CG8541-PA (LOC658856), mRNA Length = 591 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tgaaggcgggggcggcgccg 278 |||||||||||||||||||| Sbjct: 379 tgaaggcgggggcggcgccg 360
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 accttgcagtccgtgggttt 259 |||||||||||||||||||| Sbjct: 4031899 accttgcagtccgtgggttt 4031880
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gacgtcgccgtcgagcacgt 447 |||||||||||||||||||| Sbjct: 1522425 gacgtcgccgtcgagcacgt 1522444
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence Length = 190432 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcgggggcggcgccgccgg 282 |||||||||||||||||||| Sbjct: 28815 ggcgggggcggcgccgccgg 28834
>emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 in linkage group 17, complete sequence Length = 146938 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tagtagtagtagtatgtgca 50 |||||||||||||||||||| Sbjct: 121210 tagtagtagtagtatgtgca 121229
>gb|BC082318.1| Mus musculus transient receptor potential cation channel, subfamily C, member 2, mRNA (cDNA clone IMAGE:6419565), complete cds Length = 2832 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 784 gatccccagacgagcaccaaggaa 807
>gb|DQ397575.1| Cenarchaeum symbiosum clone C11D05, complete sequence Length = 41867 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 gccgccgaacgccggcttgaggtc 475 |||||||||||| ||||||||||| Sbjct: 34873 gccgccgaacgcgggcttgaggtc 34850
>emb|BX927140.10| Zebrafish DNA sequence from clone CH211-288B23 in linkage group 22, complete sequence Length = 125248 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 atagtagtagtagtatgtgc 49 |||||||||||||||||||| Sbjct: 30927 atagtagtagtagtatgtgc 30946
>emb|CR618754.1| full-length cDNA clone CS0DE008YN19 of Placenta of Homo sapiens (human) Length = 1666 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 1325 cggcgccgccgggggcgggg 1306
>emb|CR617287.1| full-length cDNA clone CS0DI077YG21 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1199 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 727 cggcgccgccgggggcgggg 708
>emb|CR614073.1| full-length cDNA clone CS0DE009YH16 of Placenta of Homo sapiens (human) Length = 838 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 339 cggcgccgccgggggcgggg 320
>emb|CR611012.1| full-length cDNA clone CS0DI028YM05 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1791 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 1321 cggcgccgccgggggcgggg 1302
>emb|CR606949.1| full-length cDNA clone CS0DE003YP24 of Placenta of Homo sapiens (human) Length = 1788 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 1315 cggcgccgccgggggcgggg 1296
>emb|CR596985.1| full-length cDNA clone CS0DN002YA05 of Adult brain of Homo sapiens (human) Length = 1809 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 1344 cggcgccgccgggggcgggg 1325
>emb|CR595646.1| full-length cDNA clone CS0DL005YM05 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 935 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 554 cggcgccgccgggggcgggg 535
>dbj|AK040538.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430105L04 product:transient receptor protein 2, full insert sequence Length = 4847 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 788 gatccccagacgagcaccaaggaa 811
>dbj|AK041300.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530098A22 product:transient receptor protein 2, full insert sequence Length = 2299 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 871 gatccccagacgagcaccaaggaa 894
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 374 gacctcgacctcgaccgcccctgccgcc 401 ||||||||||||||||||| | |||||| Sbjct: 18965103 gacctcgacctcgaccgccaccgccgcc 18965076
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 tccaactagtaccactagca 83 |||||||||||||||||||| Sbjct: 29097119 tccaactagtaccactagca 29097100
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 3444758 ggcggcgccgccgggggcgg 3444739
>gb|AC009506.5| Homo sapiens BAC clone RP11-542H1 from 2, complete sequence Length = 191764 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tagtagtagtagtatgtgca 50 |||||||||||||||||||| Sbjct: 48117 tagtagtagtagtatgtgca 48098
>gb|AF230802.1|AF230802 Mus musculus transient receptor potential channel 2-alpha mRNA, complete cds Length = 3805 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 219 gatccccagacgagcaccaaggaa 242
>gb|AY193834.1| Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta (CEBPB) gene, complete cds Length = 5086 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 cggcgccgccgggggcgggg 290 |||||||||||||||||||| Sbjct: 2332 cggcgccgccgggggcgggg 2313
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 123128 ggcggcgccgccgggggcgg 123109
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 12826 ggcggcgccgccgggggcgg 12807
>dbj|AK120073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013006P20, full insert sequence Length = 1270 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 540 ggcggcgccgccgggggcgg 521
>dbj|AK100366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083O16, full insert sequence Length = 2324 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcgggggcggcgccgccgg 282 |||||||||||||||||||| Sbjct: 195 ggcgggggcggcgccgccgg 214
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 acctcgaccgcccctgccgccagc 404 |||||||||||| ||||||||||| Sbjct: 3318594 acctcgaccgccactgccgccagc 3318617
>gb|AF065607.1|MMFGF8S1 Mus musculus fibroblast growth factor-8 (Fgf8) gene, promoter region; 5'UTR, complete sequence; and partial cds Length = 1462 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 ggcgggggcggcgccgccgggggcgggg 290 ||||||||||| || ||||||||||||| Sbjct: 1069 ggcgggggcggggcggccgggggcgggg 1042
>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete sequence Length = 99356 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ggcgggggcggcgccgccgg 282 |||||||||||||||||||| Sbjct: 34490 ggcgggggcggcgccgccgg 34509
>gb|AF111108.1|AF111108 Mus musculus transient receptor potential 2 (Trp2) mRNA, alternatively spliced, complete cds Length = 3608 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 328 gatccccagacgagcaccaaggaa 351
>gb|AY465411.1| Mus musculus transient receptor potential cation channel subfamily C member 2 long channel splice form (Trpc2) mRNA, complete cds; alternatively spliced Length = 3401 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 639 gatccccagacgagcaccaaggaa 662
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 31518 ggcggcgccgccgggggcgg 31499
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 374 gacctcgacctcgaccgcccctgccgcc 401 ||||||||||||||||||| | |||||| Sbjct: 19123752 gacctcgacctcgaccgccaccgccgcc 19123725
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 123876 ggcggcgccgccgggggcgg 123857
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gatcctggccctgggcccgg 327 |||||||||||||||||||| Sbjct: 1795190 gatcctggccctgggcccgg 1795171
>gb|AC003101.1|AC003101 Homo sapiens chromosome 17, clone HRPC41C23, complete sequence Length = 208396 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 gggcggcgccgccgggggcgggga 291 ||||||||| |||||||||||||| Sbjct: 139617 gggcggcgcggccgggggcgggga 139594
>ref|NM_011644.1| Mus musculus transient receptor potential cation channel, subfamily C, member 2 (Trpc2), mRNA Length = 3608 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gatccccaaacgagcaccaaggaa 212 |||||||| ||||||||||||||| Sbjct: 328 gatccccagacgagcaccaaggaa 351
>gb|AC149086.4| Mus musculus BAC clone RP24-245L1 from 19, complete sequence Length = 185283 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 ggcgggggcggcgccgccgggggcgggg 290 ||||||||||| || ||||||||||||| Sbjct: 117197 ggcgggggcggggcggccgggggcgggg 117224
>dbj|AB051107.1| Oryza sativa RIP1 mRNA for ribosome inactivating protein 1, complete cds Length = 1329 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ggcggcgccgccgggggcgg 288 |||||||||||||||||||| Sbjct: 475 ggcggcgccgccgggggcgg 456 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,797,145 Number of Sequences: 3902068 Number of extensions: 2797145 Number of successful extensions: 126026 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124873 Number of HSP's gapped (non-prelim): 1153 length of query: 491 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 469 effective length of database: 17,147,199,772 effective search space: 8042036693068 effective search space used: 8042036693068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)