ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474411.1| Oryza sativa (japonica cultivar-group), predic... 125 1e-25
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AK105205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
4emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 125 1e-25
5emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 117 3e-23
6ref|XM_479651.1| Oryza sativa (japonica cultivar-group), mRNA 111 2e-21
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
8dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
9dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
10gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
12dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
13gb|AC008225.4| Drosophila melanogaster clone BACR03E11, complete... 44 0.37
14gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Can... 44 0.37
15gb|AY118875.1| Drosophila melanogaster GM30768 full insert cDNA 44 0.37
16ref|NM_141446.1| Drosophila melanogaster CG10055-RA (CG10055), mRNA 44 0.37
17gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, r... 44 0.37
18gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12... 44 0.37
19gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.5
20ref|NM_195480.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.7
21gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
22ref|XM_417710.1| PREDICTED: Gallus gallus similar to guanylate b... 40 5.7
23gb|AY543966.1| Salmo salar clone Rsa315 microsatellite sequence 40 5.7
24gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, co... 40 5.7
25ref|XM_994146.1| PREDICTED: Mus musculus chondroitin sulfate pro... 40 5.7
26ref|XM_994134.1| PREDICTED: Mus musculus chondroitin sulfate pro... 40 5.7
27ref|XM_994169.1| PREDICTED: Mus musculus chondroitin sulfate pro... 40 5.7
28ref|XM_912905.2| PREDICTED: Mus musculus chondroitin sulfate pro... 40 5.7
29ref|XM_898918.2| PREDICTED: Mus musculus chondroitin sulfate pro... 40 5.7
30ref|XM_488510.4| PREDICTED: Mus musculus chondroitin sulfate pro... 40 5.7
31emb|CR659497.2|CNS0F7U7 Tetraodon nigroviridis full-length cDNA 40 5.7
32gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
33gb|AF321235.1|AF321235 Mus musculus chromosome 7-E3 B4 olfactory... 40 5.7
34dbj|AK014525.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 5.7
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
36dbj|AP005489.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
37emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chr... 40 5.7
38dbj|D16263.1|MUSPGMV Mus musculus mRNA for PG-M/versican, comple... 40 5.7
39gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
40gb|AC164977.2| Mus musculus BAC clone RP23-446B6 from chromosome... 40 5.7
41dbj|D28599.1|MUSPGM Mouse mRNA for proteoglycan, PG-M 40 5.7
42dbj|AB000454.1| Petunia hybrida taz1 mRNA for tapetum-specific z... 40 5.7 
>ref|XM_474411.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 675

 Score =  125 bits (63), Expect = 1e-25
 Identities = 138/163 (84%)
 Strand = Plus / Minus

                                                                       
Query: 266 agcgcttcctgatagagaaggcggcgaggatgacgaggagcacgaagatgaagacggaga 325
           ||||||| | ||||||| ||||||| | ||||||||||| || || ||||| ||||| ||
Sbjct: 673 agcgcttgcggatagagcaggcggccaagatgacgaggaacatgaggatgacgacggtga 614

                                                                       
Query: 326 ggaaggacgccacgacggcgccgctcgtgcgccggcagaagccgtggaactgcatgcaga 385
           ||||||| || |||||||  ||||| || ||| ||||||||||||||||||||||||| |
Sbjct: 613 ggaaggaggcaacgacggatccgctggttcgctggcagaagccgtggaactgcatgcata 554

                                                      
Query: 386 tgggcacccagttggcgcgctcgttcccgctgtgcgccaggtc 428
           ||| ||||||||| || |||  ||| ||| |||||||||||||
Sbjct: 553 tggccacccagttcgcccgcaggttgccgttgtgcgccaggtc 511
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  125 bits (63), Expect = 1e-25
 Identities = 138/163 (84%)
 Strand = Plus / Minus

                                                                            
Query: 266      agcgcttcctgatagagaaggcggcgaggatgacgaggagcacgaagatgaagacggaga 325
                ||||||| | ||||||| ||||||| | ||||||||||| || || ||||| ||||| ||
Sbjct: 34986561 agcgcttgcggatagagcaggcggccaagatgacgaggaacatgaggatgacgacggtga 34986502

                                                                            
Query: 326      ggaaggacgccacgacggcgccgctcgtgcgccggcagaagccgtggaactgcatgcaga 385
                ||||||| || |||||||  ||||| || ||| ||||||||||||||||||||||||| |
Sbjct: 34986501 ggaaggaggcaacgacggatccgctggttcgctggcagaagccgtggaactgcatgcata 34986442

                                                           
Query: 386      tgggcacccagttggcgcgctcgttcccgctgtgcgccaggtc 428
                ||| ||||||||| || |||  ||| ||| |||||||||||||
Sbjct: 34986441 tggccacccagttcgcccgcaggttgccgttgtgcgccaggtc 34986399
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>dbj|AK105205.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G03, full
           insert sequence
          Length = 592

 Score =  125 bits (63), Expect = 1e-25
 Identities = 138/163 (84%)
 Strand = Plus / Minus

                                                                       
Query: 266 agcgcttcctgatagagaaggcggcgaggatgacgaggagcacgaagatgaagacggaga 325
           ||||||| | ||||||| ||||||| | ||||||||||| || || ||||| ||||| ||
Sbjct: 289 agcgcttgcggatagagcaggcggccaagatgacgaggaacatgaggatgacgacggtga 230

                                                                       
Query: 326 ggaaggacgccacgacggcgccgctcgtgcgccggcagaagccgtggaactgcatgcaga 385
           ||||||| || |||||||  ||||| || ||| ||||||||||||||||||||||||| |
Sbjct: 229 ggaaggaggcaacgacggatccgctggttcgctggcagaagccgtggaactgcatgcata 170

                                                      
Query: 386 tgggcacccagttggcgcgctcgttcccgctgtgcgccaggtc 428
           ||| ||||||||| || |||  ||| ||| |||||||||||||
Sbjct: 169 tggccacccagttcgcccgcaggttgccgttgtgcgccaggtc 127
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score =  125 bits (63), Expect = 1e-25
 Identities = 138/163 (84%)
 Strand = Plus / Minus

                                                                         
Query: 266   agcgcttcctgatagagaaggcggcgaggatgacgaggagcacgaagatgaagacggaga 325
             ||||||| | ||||||| ||||||| | ||||||||||| || || ||||| ||||| ||
Sbjct: 45611 agcgcttgcggatagagcaggcggccaagatgacgaggaacatgaggatgacgacggtga 45552

                                                                         
Query: 326   ggaaggacgccacgacggcgccgctcgtgcgccggcagaagccgtggaactgcatgcaga 385
             ||||||| || |||||||  ||||| || ||| ||||||||||||||||||||||||| |
Sbjct: 45551 ggaaggaggcaacgacggatccgctggttcgctggcagaagccgtggaactgcatgcata 45492

                                                        
Query: 386   tgggcacccagttggcgcgctcgttcccgctgtgcgccaggtc 428
             ||| ||||||||| || |||  ||| ||| |||||||||||||
Sbjct: 45491 tggccacccagttcgcccgcaggttgccgttgtgcgccaggtc 45449
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>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score =  117 bits (59), Expect = 3e-23
 Identities = 137/163 (84%)
 Strand = Plus / Minus

                                                                         
Query: 266   agcgcttcctgatagagaaggcggcgaggatgacgaggagcacgaagatgaagacggaga 325
             ||||||| | ||| ||| ||||||| | ||||||||||| || || ||||| ||||| ||
Sbjct: 16717 agcgcttgcggatggagcaggcggccaagatgacgaggaacatgaggatgacgacggtga 16658

                                                                         
Query: 326   ggaaggacgccacgacggcgccgctcgtgcgccggcagaagccgtggaactgcatgcaga 385
             ||||||| || |||||||  ||||| || ||| ||||||||||||||||||||||||| |
Sbjct: 16657 ggaaggaggcaacgacggatccgctggttcgctggcagaagccgtggaactgcatgcata 16598

                                                        
Query: 386   tgggcacccagttggcgcgctcgttcccgctgtgcgccaggtc 428
             ||| ||||||||| || |||  ||| ||| |||||||||||||
Sbjct: 16597 tggccacccagttcgcccgcaggttgccgttgtgcgccaggtc 16555
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>ref|XM_479651.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 714

 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                       
Query: 282 gaaggcggcgaggatgacgaggagcacgaagatgaagacggagaggaaggacgccacgac 341
           ||||||||| | || || ||||| || || || |||||||| ||||||||| || | |||
Sbjct: 678 gaaggcggccatgacgatgaggaccatgaggacgaagacggcgaggaaggaggcgatgac 619

                                                                       
Query: 342 ggcgccgctcgtgcgccggcagaagccgtggaactgcatgcagatgggcacccagttggc 401
           ||||||||| |||||| |||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 618 ggcgccgctggtgcgctggcagaagccgtggaattgcaagcatatgggcacccagttggc 559

               
Query: 402 gcgc 405
           ||||
Sbjct: 558 gcgc 555
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                          
Query: 282    gaaggcggcgaggatgacgaggagcacgaagatgaagacggagaggaaggacgccacgac 341
              ||||||||| | || || ||||| || || || |||||||| ||||||||| || | |||
Sbjct: 102864 gaaggcggccatgacgatgaggaccatgaggacgaagacggcgaggaaggaggcgatgac 102805

                                                                          
Query: 342    ggcgccgctcgtgcgccggcagaagccgtggaactgcatgcagatgggcacccagttggc 401
              ||||||||| |||||| |||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 102804 ggcgccgctggtgcgctggcagaagccgtggaattgcaagcatatgggcacccagttggc 102745

                  
Query: 402    gcgc 405
              ||||
Sbjct: 102744 gcgc 102741



 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 359      ggcagaagccgtggaactgcatgcagatgggcacccagttggcgcgctcgttcccgctgt 418
                ||||||||||||||||||||||||| |||||||||||||| || |||  ||| ||| |||
Sbjct: 19786749 ggcagaagccgtggaactgcatgcatatgggcacccagttcgcccgcaggttgccgttgt 19786690

                          
Query: 419      gcgccaggtc 428
                ||||||||||
Sbjct: 19786689 gcgccaggtc 19786680



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 330      ggacgccacgacggcgccgc 349
                ||||||||||||||||||||
Sbjct: 17962287 ggacgccacgacggcgccgc 17962306
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>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0015C07
          Length = 149079

 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                         
Query: 282   gaaggcggcgaggatgacgaggagcacgaagatgaagacggagaggaaggacgccacgac 341
             ||||||||| | || || ||||| || || || |||||||| ||||||||| || | |||
Sbjct: 18199 gaaggcggccatgacgatgaggaccatgaggacgaagacggcgaggaaggaggcgatgac 18140

                                                                         
Query: 342   ggcgccgctcgtgcgccggcagaagccgtggaactgcatgcagatgggcacccagttggc 401
             ||||||||| |||||| |||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 18139 ggcgccgctggtgcgctggcagaagccgtggaattgcaagcatatgggcacccagttggc 18080

                 
Query: 402   gcgc 405
             ||||
Sbjct: 18079 gcgc 18076
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1147B12
          Length = 127902

 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                          
Query: 282    gaaggcggcgaggatgacgaggagcacgaagatgaagacggagaggaaggacgccacgac 341
              ||||||||| | || || ||||| || || || |||||||| ||||||||| || | |||
Sbjct: 102864 gaaggcggccatgacgatgaggaccatgaggacgaagacggcgaggaaggaggcgatgac 102805

                                                                          
Query: 342    ggcgccgctcgtgcgccggcagaagccgtggaactgcatgcagatgggcacccagttggc 401
              ||||||||| |||||| |||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 102804 ggcgccgctggtgcgctggcagaagccgtggaattgcaagcatatgggcacccagttggc 102745

                  
Query: 402    gcgc 405
              ||||
Sbjct: 102744 gcgc 102741
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>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15,
              complete sequence
          Length = 168519

 Score =  105 bits (53), Expect = 1e-19
 Identities = 92/105 (87%)
 Strand = Plus / Plus

                                                                          
Query: 294    gatgacgaggagcacgaagatgaagacggagaggaaggacgccacgacggcgccgctcgt 353
              ||||||||||| || || ||||| ||||| ||||||||| || ||||||| |||||| ||
Sbjct: 115292 gatgacgaggaacatgaggatgacgacggtgaggaaggaggcgacgacggagccgctggt 115351

                                                           
Query: 354    gcgccggcagaagccgtggaactgcatgcagatgggcacccagtt 398
               ||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 115352 tcgctggcagaagccgtggaactgcatgcatatgggaacccagtt 115396
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  105 bits (53), Expect = 1e-19
 Identities = 92/105 (87%)
 Strand = Plus / Plus

                                                                            
Query: 294      gatgacgaggagcacgaagatgaagacggagaggaaggacgccacgacggcgccgctcgt 353
                ||||||||||| || || ||||| ||||| ||||||||| || ||||||| |||||| ||
Sbjct: 23429756 gatgacgaggaacatgaggatgacgacggtgaggaaggaggcgacgacggagccgctggt 23429815

                                                             
Query: 354      gcgccggcagaagccgtggaactgcatgcagatgggcacccagtt 398
                 ||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 23429816 tcgctggcagaagccgtggaactgcatgcatatgggaacccagtt 23429860
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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0007M04
          Length = 176293

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                          
Query: 359    ggcagaagccgtggaactgcatgcagatgggcacccagttggcgcgctcgttcccgctgt 418
              ||||||||||||||||||||||||| |||||||||||||| || |||  ||| ||| |||
Sbjct: 115700 ggcagaagccgtggaactgcatgcatatgggcacccagttcgcccgcaggttgccgttgt 115641

                        
Query: 419    gcgccaggtc 428
              ||||||||||
Sbjct: 115640 gcgccaggtc 115631
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>gb|AC008225.4| Drosophila melanogaster clone BACR03E11, complete sequence
          Length = 174123

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 291   gaggatgacgaggagcacgaagatga 316
             ||||||||||||||| ||||||||||
Sbjct: 28118 gaggatgacgaggaggacgaagatga 28143
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>gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 169583

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 146   gaggatgcatgcaacattaaaacacacaga 175
             |||||||||||||||||  |||||||||||
Sbjct: 10992 gaggatgcatgcaacatggaaacacacaga 11021
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>gb|AY118875.1| Drosophila melanogaster GM30768 full insert cDNA
          Length = 2423

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 291  gaggatgacgaggagcacgaagatga 316
            ||||||||||||||| ||||||||||
Sbjct: 1718 gaggatgacgaggaggacgaagatga 1743
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>ref|NM_141446.1| Drosophila melanogaster CG10055-RA (CG10055), mRNA
          Length = 2402

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 291  gaggatgacgaggagcacgaagatga 316
            ||||||||||||||| ||||||||||
Sbjct: 1718 gaggatgacgaggaggacgaagatga 1743
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>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone
             BACR01C11, complete sequence
          Length = 176991

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 291   gaggatgacgaggagcacgaagatga 316
             ||||||||||||||| ||||||||||
Sbjct: 47112 gaggatgacgaggaggacgaagatga 47087
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>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the
             complete sequence
          Length = 301379

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 291   gaggatgacgaggagcacgaagatga 316
             ||||||||||||||| ||||||||||
Sbjct: 98521 gaggatgacgaggaggacgaagatga 98496
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 281     agaaggcggcgaggatgacga 301
               |||||||||||||||||||||
Sbjct: 1586005 agaaggcggcgaggatgacga 1586025



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 282     gaaggcggcgaggatgacga 301
               ||||||||||||||||||||
Sbjct: 1100069 gaaggcggcgaggatgacga 1100088
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>ref|NM_195480.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OJ1004_F02.20), mRNA
          Length = 1692

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 309 gaagatgaagacggagaggaagga 332
           ||||||||||| ||||||||||||
Sbjct: 568 gaagatgaagatggagaggaagga 591
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>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02 map
              C8, complete sequence
          Length = 116304

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 309    gaagatgaagacggagaggaagga 332
              ||||||||||| ||||||||||||
Sbjct: 106498 gaagatgaagatggagaggaagga 106475
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>ref|XM_417710.1| PREDICTED: Gallus gallus similar to guanylate binding protein
           (LOC419563), mRNA
          Length = 5156

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 297 gacgaggagcacgaagatgaagac 320
           ||||||||| ||||||||||||||
Sbjct: 631 gacgaggaggacgaagatgaagac 654
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>gb|AY543966.1| Salmo salar clone Rsa315 microsatellite sequence
          Length = 718

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 catgcaacattaaaacacac 172
           ||||||||||||||||||||
Sbjct: 700 catgcaacattaaaacacac 681
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>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence
          Length = 192662

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   gaagatgaagacggagagga 328
             ||||||||||||||||||||
Sbjct: 68668 gaagatgaagacggagagga 68687
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>ref|XM_994146.1| PREDICTED: Mus musculus chondroitin sulfate proteoglycan 2,
            transcript variant 3 (Cspg2), mRNA
          Length = 9609

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 1704 gaagatgaagacggagagga 1723
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>ref|XM_994134.1| PREDICTED: Mus musculus chondroitin sulfate proteoglycan 2,
            transcript variant 2 (Cspg2), mRNA
          Length = 12301

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 4396 gaagatgaagacggagagga 4415
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>ref|XM_994169.1| PREDICTED: Mus musculus chondroitin sulfate proteoglycan 2,
            transcript variant 4 (Cspg2), mRNA
          Length = 12432

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 4527 gaagatgaagacggagagga 4546
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>ref|XM_912905.2| PREDICTED: Mus musculus chondroitin sulfate proteoglycan 2,
            transcript variant 6 (Cspg2), mRNA
          Length = 12431

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 4527 gaagatgaagacggagagga 4546
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>ref|XM_898918.2| PREDICTED: Mus musculus chondroitin sulfate proteoglycan 2,
            transcript variant 5 (Cspg2), mRNA
          Length = 9609

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 1704 gaagatgaagacggagagga 1723
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>ref|XM_488510.4| PREDICTED: Mus musculus chondroitin sulfate proteoglycan 2,
            transcript variant 1 (Cspg2), mRNA
          Length = 12432

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 4527 gaagatgaagacggagagga 4546
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>emb|CR659497.2|CNS0F7U7 Tetraodon nigroviridis full-length cDNA
          Length = 1275

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  ggcggcgaggatgacgagga 304
            ||||||||||||||||||||
Sbjct: 1000 ggcggcgaggatgacgagga 1019
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>gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0014J14, complete sequence
          Length = 191397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 309   gaagatgaagacggagaggaagga 332
             ||||||||||| ||||||||||||
Sbjct: 75241 gaagatgaagatggagaggaagga 75218
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>gb|AF321235.1|AF321235 Mus musculus chromosome 7-E3 B4 olfactory receptor gene, partial cds;
             and B5 olfactory receptor and B6 olfactory receptor genes,
             complete cds
          Length = 34498

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   acgaagatgaagacggagaggaag 330
             ||||||||||||||| ||||||||
Sbjct: 11276 acgaagatgaagacgaagaggaag 11299
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>dbj|AK014525.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4631420C02 product:chondroitin sulfate
            proteoglycan 2, full insert sequence
          Length = 2448

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 1457 gaagatgaagacggagagga 1476
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 309     gaagatgaagacggagaggaagga 332
               ||||||||||| ||||||||||||
Sbjct: 7249880 gaagatgaagatggagaggaagga 7249857
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>dbj|AP005489.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0013H03
          Length = 152998

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   ggacgccacgacggcgccgc 349
             ||||||||||||||||||||
Sbjct: 47322 ggacgccacgacggcgccgc 47341
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>emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chromosome 14, complete
              sequence
          Length = 197196

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 234    acacacagacacggttaagcaaggctgg 261
              ||||||||||||||||||| || |||||
Sbjct: 190456 acacacagacacggttaaggaaagctgg 190483
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>dbj|D16263.1|MUSPGMV Mus musculus mRNA for PG-M/versican, complete cds
          Length = 7375

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 1207 gaagatgaagacggagagga 1226
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 309     gaagatgaagacggagaggaagga 332
               ||||||||||| ||||||||||||
Sbjct: 7253179 gaagatgaagatggagaggaagga 7253156
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>gb|AC164977.2| Mus musculus BAC clone RP23-446B6 from chromosome 14, complete
            sequence
          Length = 179146

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 234  acacacagacacggttaagcaaggctgg 261
            ||||||||||||||||||| || |||||
Sbjct: 7216 acacacagacacggttaaggaaagctgg 7243
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>dbj|D28599.1|MUSPGM Mouse mRNA for proteoglycan, PG-M
          Length = 10427

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  gaagatgaagacggagagga 328
            ||||||||||||||||||||
Sbjct: 4259 gaagatgaagacggagagga 4278
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>dbj|AB000454.1| Petunia hybrida taz1 mRNA for tapetum-specific zinc finger protein
           1, complete cds
          Length = 1886

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 aggatgacgaggagcacgaa 311
           ||||||||||||||||||||
Sbjct: 923 aggatgacgaggagcacgaa 942


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,494,182
Number of Sequences: 3902068
Number of extensions: 3494182
Number of successful extensions: 76362
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76093
Number of HSP's gapped (non-prelim): 269
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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