Clone Name | rbart12b08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_506994.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1767_D02.15-2 mRNA Length = 1130 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 886 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 827 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 826 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 767 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 766 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 707 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 706 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 647 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 646 ggatcatccaa 636
>ref|XM_467983.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1187 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 943 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 884 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 883 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 824 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 823 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 764 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 763 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 704 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 703 ggatcatccaa 693
>ref|XM_467984.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1125 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 944 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 885 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 884 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 825 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 824 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 765 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 764 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 705 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 704 ggatcatccaa 694
>ref|XM_507534.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1767_D02.15-2 mRNA Length = 1198 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 944 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 885 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 884 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 825 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 824 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 765 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 764 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 705 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 704 ggatcatccaa 694
>ref|XM_506993.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1767_D02.15-2 mRNA Length = 1204 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 948 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 889 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 888 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 829 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 828 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 769 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 768 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 709 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 708 ggatcatccaa 698
>dbj|AK104659.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D07, full insert sequence Length = 1187 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 943 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 884 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 883 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 824 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 823 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 764 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 763 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 704 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 703 ggatcatccaa 693
>dbj|AK098996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102B11, full insert sequence Length = 1199 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 945 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 886 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 885 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 826 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 825 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 766 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 765 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 706 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 705 ggatcatccaa 695
>dbj|AK060304.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A07, full insert sequence Length = 1130 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 886 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 827 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 826 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 767 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 766 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 707 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 706 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 647 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 646 ggatcatccaa 636
>dbj|AK059725.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B08, full insert sequence Length = 1204 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 948 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 889 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||||||||||||||||| |||| ||||| || Sbjct: 888 ttggtttcttctatgaccttcagagcatattccttgcttgtgggtttgttgcccagacca 829 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||| Sbjct: 828 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccagtctctgatggca 769 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 768 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 709 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 708 ggatcatccaa 698
>dbj|AK099120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A18, full insert sequence Length = 1123 Score = 262 bits (132), Expect = 1e-66 Identities = 222/251 (88%), Gaps = 2/251 (0%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 942 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 883 Query: 305 ttggtttcctctatcaccttcagggcatattccttgcttgtgggcttgtcgcccaagccg 364 |||||||| ||||| |||||||| |||||| ||||||||||||| |||| ||||| || Sbjct: 882 ttggtttcttctatgaccttcagagcatatcccttgcttgtgggtttgttgcccagacca 823 Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| |||||||| ||||||||||| ||||||||| |||||| ||| Sbjct: 822 aatctgtttgcaggcttaccgtctggtatcttgtagtccctgaaccag--tctgatggca 765 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttg 484 ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||||||||| Sbjct: 764 gtcaatgttcccggaaaatgcttctcaacatcatccacatcattcacaagagatgcttta 705 Query: 485 ggatcgtccaa 495 ||||| ||||| Sbjct: 704 ggatcatccaa 694
>gb|BT017874.1| Zea mays clone EL01N0513B08.c mRNA sequence Length = 961 Score = 178 bits (90), Expect = 1e-41 Identities = 177/206 (85%) Strand = Plus / Minus Query: 278 ctcttcaccaatttctcccatgactcgttggtttcctctatcaccttcagggcatattcc 337 ||||| ||||||||||||||||| |||||||| || | || ||||||||||| |||||| Sbjct: 703 ctctttaccaatttctcccatgattcgttggtctcttgaatgaccttcagggcgtattcc 644 Query: 338 ttgcttgtgggcttgtcgcccaagccgaatctgttggcgggcttcccgtctgggatcttg 397 ||||||| |||||||| ||| | || ||| ||||||| ||||| || || || |||||| Sbjct: 643 ttgcttgcgggcttgttgccgagaccaaatttgttggcaggctttccatcaggtatcttg 584 Query: 398 tagtctctgaaccagtctctgattgcagtcaacgttcccggaaaatgctcctcgacatca 457 ||||||||||||||||||||||| ||||||| || ||||||||||||| ||| |||||| Sbjct: 583 tagtctctgaaccagtctctgatggcagtcagtgtccccggaaaatgcttctcaacatca 524 Query: 458 tctacatcattcacaagagatgcttt 483 || || || ||||||||||||||||| Sbjct: 523 tccacgtcgttcacaagagatgcttt 498
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 32396402 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 32396343 Query: 305 ttggtttcctctatcaccttcagggcatattcct 338 |||||||| ||||| |||||||| |||||||||| Sbjct: 32396342 ttggtttcttctatgaccttcagagcatattcct 32396309 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 336 ccttgcttgtgggcttgtcgcccaagccgaatctgttggcgggcttcccgtctgggatct 395 ||||||||||||| |||| ||||| || |||||||| || ||||| |||||||| |||| Sbjct: 32396234 ccttgcttgtgggtttgttgcccagaccaaatctgtttgcaggcttaccgtctggtatct 32396175 Query: 396 tgtagtctctgaaccagtctctgattgcagtcaacgttccc 436 ||||||| ||||||||||||||||| |||||||| |||||| Sbjct: 32396174 tgtagtccctgaaccagtctctgatggcagtcaatgttccc 32396134 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 435 ccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttgggatcgtcca 494 |||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||| |||| Sbjct: 32395675 ccggaaaatgcttctcaacatcatccacatcattcacaagagatgctttaggatcatcca 32395616 Query: 495 a 495 | Sbjct: 32395615 a 32395615
>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1767_D02 Length = 139145 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 245 taggctagcgagagctctcccgccgggattttcctcttcaccaatttctcccatgactcg 304 |||||||| ||||||||||| || ||||| ||||| |||||||||||||||||||| ||| Sbjct: 57915 taggctagtgagagctctccagcagggatattccttttcaccaatttctcccatgattcg 57856 Query: 305 ttggtttcctctatcaccttcagggcatattcct 338 |||||||| ||||| |||||||| |||||||||| Sbjct: 57855 ttggtttcttctatgaccttcagagcatattcct 57822 Score = 105 bits (53), Expect = 1e-19 Identities = 89/101 (88%) Strand = Plus / Minus Query: 336 ccttgcttgtgggcttgtcgcccaagccgaatctgttggcgggcttcccgtctgggatct 395 ||||||||||||| |||| ||||| || |||||||| || ||||| |||||||| |||| Sbjct: 57747 ccttgcttgtgggtttgttgcccagaccaaatctgtttgcaggcttaccgtctggtatct 57688 Query: 396 tgtagtctctgaaccagtctctgattgcagtcaacgttccc 436 ||||||| ||||||||||||||||| |||||||| |||||| Sbjct: 57687 tgtagtccctgaaccagtctctgatggcagtcaatgttccc 57647 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 435 ccggaaaatgctcctcgacatcatctacatcattcacaagagatgctttgggatcgtcca 494 |||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||| |||| Sbjct: 57188 ccggaaaatgcttctcaacatcatccacatcattcacaagagatgctttaggatcatcca 57129 Query: 495 a 495 | Sbjct: 57128 a 57128
>ref|NM_121002.2| Arabidopsis thaliana inorganic diphosphatase/ magnesium ion binding / pyrophosphatase AT5G09650 mRNA, complete cds Length = 1175 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| || || Sbjct: 878 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctctaatggct 819 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaaga 475 || | || ||||| ||||| | ||| ||||| || ||||||||||||||| Sbjct: 818 gttagtgtacccgggaaatgtttctcaacatcttcaacatcattcacaaga 768
>gb|AY551439.1| Arabidopsis thaliana chloroplast inorganic pyrophosphatase mRNA, complete cds; nuclear gene for chloroplast product Length = 1077 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| || || Sbjct: 782 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctctaatggct 723 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaaga 475 || | || ||||| ||||| | ||| ||||| || ||||||||||||||| Sbjct: 722 gttagtgtacccgggaaatgtttctcaacatcttcaacatcattcacaaga 672
>gb|AY079355.1| Arabidopsis thaliana putative inorganic pyrophosphatase (At5g09650) mRNA, complete cds Length = 934 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| || || Sbjct: 782 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctctaatggct 723 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaaga 475 || | || ||||| ||||| | ||| ||||| || ||||||||||||||| Sbjct: 722 gttagtgtacccgggaaatgtttctcaacatcttcaacatcattcacaaga 672
>gb|AY045945.1| Arabidopsis thaliana putative inorganic pyrophosphatase (At5g09650) mRNA, complete cds Length = 1161 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| || || Sbjct: 866 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctctaatggct 807 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaaga 475 || | || ||||| ||||| | ||| ||||| || ||||||||||||||| Sbjct: 806 gttagtgtacccgggaaatgtttctcaacatcttcaacatcattcacaaga 756
>gb|AY087275.1| Arabidopsis thaliana clone 33506 mRNA, complete sequence Length = 1139 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| || || Sbjct: 879 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctctaatggct 820 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaaga 475 || | || ||||| ||||| | ||| ||||| || ||||||||||||||| Sbjct: 819 gttagtgtacccgggaaatgtttctcaacatcttcaacatcattcacaaga 769
>emb|AJ252210.1|ATH252210 Arabidopsis thaliana mRNA for inorganic pyrophosphatase (ppa gene) Length = 911 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgca 424 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| || || Sbjct: 784 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctctaatggct 725 Query: 425 gtcaacgttcccggaaaatgctcctcgacatcatctacatcattcacaaga 475 || | || ||||| ||||| | ||| ||||| || ||||||||||||||| Sbjct: 724 gttagtgtacccgggaaatgtttctcaacatcttcaacatcattcacaaga 674
>dbj|AB020752.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH16 Length = 68098 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctct 417 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| Sbjct: 12409 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctct 12461
>gb|AY109365.1| Zea mays CL4861_1 mRNA sequence Length = 1506 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 392 atcttgtagtctctgaaccagtctctgattgcagtca 428 ||||||||||||||||||||||||||||| ||||||| Sbjct: 211 atcttgtagtctctgaaccagtctctgatggcagtca 175
>emb|AL353994.1|ATF17I14 Arabidopsis thaliana DNA chromosome 5, BAC clone F17I14 (ESSA project) Length = 92491 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 365 aatctgttggcgggcttcccgtctgggatcttgtagtctctgaaccagtctct 417 |||||||| || ||||| || |||||||||||||||||||| ||||||||||| Sbjct: 57175 aatctgttagcaggctttccatctgggatcttgtagtctctaaaccagtctct 57123
>emb|BX830340.1|CNS0A1HN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB74ZD07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1094 Score = 61.9 bits (31), Expect = 2e-06 Identities = 82/99 (82%) Strand = Plus / Minus Query: 377 ggcttcccgtctgggatcttgtagtctctgaaccagtctctgattgcagtcaacgttccc 436 ||||| || |||||||||||||||||||| ||||||||||| || || || | || ||| Sbjct: 835 ggctttccatctgggatcttgtagtctctaaaccagtctctaatggctgtgagtgtaccc 776 Query: 437 ggaaaatgctcctcgacatcatctacatcattcacaaga 475 || | ||| | ||| ||||| || ||||||||||||||| Sbjct: 775 gggagatgtttctcaacatcttcaacatcattcacaaga 737
>emb|AJ298231.1|CRE298231 Chlamydomonas reinhardtii partial mRNA for inorganic pyrophosphatase precursor (ppaI gene) Length = 1147 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 369 tgttggcgggcttcccgtctgggatcttgtagtctctgaacca 411 ||||||||||||| ||||| ||||| |||||||| | |||||| Sbjct: 766 tgttggcgggcttgccgtcagggattttgtagtcccggaacca 724
>ref|XM_414212.1| PREDICTED: Gallus gallus similar to Sulfotransferase family 5A, member 1 (LOC415852), mRNA Length = 1290 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 ctcctcgacatcatctacatca 466 |||||||||||||||||||||| Sbjct: 1262 ctcctcgacatcatctacatca 1283
>gb|AC117535.2| Homo sapiens chromosome 5 clone RP11-937M12, complete sequence Length = 176581 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 ttattcaatcattatttcctgtttt 112 |||| |||||||||||||||||||| Sbjct: 59472 ttatacaatcattatttcctgtttt 59448
>gb|AC108126.2| Homo sapiens chromosome 5 clone RP11-613D17, complete sequence Length = 85638 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 ttattcaatcattatttcctgtttt 112 |||| |||||||||||||||||||| Sbjct: 81641 ttatacaatcattatttcctgtttt 81665
>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence Length = 491611 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gagagcattcattcggtttc 37 |||||||||||||||||||| Sbjct: 87039 gagagcattcattcggtttc 87020
>ref|XM_642218.1| Dictyostelium discoideum hypothetical protein (DDB0189548), partial mRNA Length = 363 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ttcattgtgaaaaaacttggctca 58 |||||||| ||||||||||||||| Sbjct: 159 ttcattgtcaaaaaacttggctca 182
>gb|BT017827.1| Zea mays clone EL01N0508E10.c mRNA sequence Length = 966 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ggtttcctctatcaccttca 326 |||||||||||||||||||| Sbjct: 668 ggtttcctctatcaccttca 649
>emb|AL356258.12| Human DNA sequence from clone RP11-170J4 on chromosome 10, complete sequence Length = 61579 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 tttcattgtgaaaaaacttg 53 |||||||||||||||||||| Sbjct: 40267 tttcattgtgaaaaaacttg 40248
>emb|AL354808.24| Human DNA sequence from clone RP11-523H24 on chromosome 13 Contains the 3' end of a novel gene, the gene for paraspeckle protein 1 (PSP1) (FLJ10955), two novel genes, a sialyltransferase 7D (SIAT7D) pseudogene, the 3' end of a variant of the ZNF237 gene for zinc finger protein 237 and two CpG islands, complete sequence Length = 169303 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 gtttcattgtgaaaaaactt 52 |||||||||||||||||||| Sbjct: 99031 gtttcattgtgaaaaaactt 99050
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 1038759 tgattattcaatcattattt 1038778
>emb|AL662802.14| Mouse DNA sequence from clone RP23-34N10 on chromosome 11, complete sequence Length = 224024 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 attttcctcttcaccaattt 291 |||||||||||||||||||| Sbjct: 145425 attttcctcttcaccaattt 145406
>emb|AL669839.13| Mouse DNA sequence from clone RP23-171P1 on chromosome 11 Contains part of the Slit 3 gene for slit homolog 3 (Drosophila), complete sequence Length = 169097 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgttttgcagatgaagaagc 147 |||||||||||||||||||| Sbjct: 145851 tgttttgcagatgaagaagc 145832
>emb|BX901978.14| Zebrafish DNA sequence from clone DKEY-155M6 in linkage group 18, complete sequence Length = 168101 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gtatgtcactgaaagaatgt 209 |||||||||||||||||||| Sbjct: 128817 gtatgtcactgaaagaatgt 128798
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 1086457 tgattattcaatcattattt 1086476
>gb|AC099569.2| Homo sapiens chromosome 1 clone RP5-1007M22, complete sequence Length = 126833 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgttttgcagatgaagaagc 147 |||||||||||||||||||| Sbjct: 99234 tgttttgcagatgaagaagc 99215
>gb|AC093423.2| Homo sapiens chromosome 1 clone RP11-413E1, complete sequence Length = 185182 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgttttgcagatgaagaagc 147 |||||||||||||||||||| Sbjct: 10052 tgttttgcagatgaagaagc 10033
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 1049733 tgattattcaatcattattt 1049752
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 946122 tgattattcaatcattattt 946141
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 1026259 tgattattcaatcattattt 1026278
>ref|NM_061649.2| Caenorhabditis elegans F45C12.10 (F45C12.10) mRNA, complete cds Length = 826 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttcaccaatttctcccatg 299 |||||||||||||||||||| Sbjct: 303 cttcaccaatttctcccatg 284
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 1010036 tgattattcaatcattattt 1010055
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 1010129 tgattattcaatcattattt 1010148
>emb|BX537274.3| Zebrafish DNA sequence from clone DKEY-103L3 in linkage group 13, complete sequence Length = 151298 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ttattcaatcattatttcctgttt 111 |||||| ||||||||||||||||| Sbjct: 95282 ttattctatcattatttcctgttt 95305
>gb|AF016684.1| Caenorhabditis elegans cosmid F45C12, complete sequence Length = 38456 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cttcaccaatttctcccatg 299 |||||||||||||||||||| Sbjct: 4691 cttcaccaatttctcccatg 4672
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 1050653 tgattattcaatcattattt 1050672
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tgattattcaatcattattt 104 |||||||||||||||||||| Sbjct: 976928 tgattattcaatcattattt 976947
>emb|AL590969.12| Mouse DNA sequence from clone RP23-281C18 on chromosome 11, complete sequence Length = 250353 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ccgggattttcctcttcacc 286 |||||||||||||||||||| Sbjct: 87564 ccgggattttcctcttcacc 87583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,257,940 Number of Sequences: 3902068 Number of extensions: 4257940 Number of successful extensions: 85971 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85677 Number of HSP's gapped (non-prelim): 286 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)