ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart12b05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 242 bits (122), Expect = 9e-61 Identities = 326/394 (82%) Strand = Plus / Minus Query: 120 ttcacttatagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcac 179 ||||||| |||||||||| || || ||||| || |||||||||||||| || ||||| | Sbjct: 1140 ttcacttgtagacctcgataacacctcgtgcacccagtttcttgacaattttgtagtcgc 1081 Query: 180 tgaaccctgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttg 239 | |||||||||||| |||||||||||||||||| ||| ||| | || ||||||||||| | Sbjct: 1080 taaaccctgctttcgtgaagagctcatgccagttattttcacttcgttgacggcctctcg 1021 Query: 240 tgttcacaagcatgagcatgtccatcaaaagctgggcctcaaacattactggccctaatg 299 || |||||||||||| |||||||||| | || ||| |||||| ||| | || |||| Sbjct: 1020 tgaacacaagcatgaggatgtccatcagagtttgttccttaaacatgacttggcccaatg 961 Query: 300 aaggccccaccacaatatctataatgatcacctttcctccctcctcatgtgaaggaatgg 359 | || | |||||||| ||||| | |||||||||||||||||||| |||||||||||| Sbjct: 960 agggggcgaccacaatgtctattacaatcacctttcctccctcctcgcgtgaaggaatgg 901 Query: 360 catccctacattgagacaagatcttgacacagtcctcgtcactccagtggtgcagcacaa 419 ||||| ||||||| | | |||||| | ||| ||||||| |||| ||||||||| |||| Sbjct: 900 catccttacattgggttaggatcttaaaacaatcctcgtaactcaagtggtgcaaaacaa 841 Query: 420 gcttgagcatcaccgcctgagacttggggacggagtggaacaagtcaccagcgacacagt 479 ||||||||||||||||||||| ||| ||||||| |||||| | ||| || || | | ||| Sbjct: 840 gcttgagcatcaccgcctgagcctttgggacggtgtggaagaggtcgccggcaaaatagt 781 Query: 480 tgacgataccgtcagatggagctttgtctatcac 513 |||| ||||||||||| |||| |||||| ||||| Sbjct: 780 tgactataccgtcagaaggagttttgtcgatcac 747
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 149 bits (75), Expect = 1e-32 Identities = 288/359 (80%) Strand = Plus / Minus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 |||||||||||| || || || ||||| || |||| ||||||||||||||| |||| || Sbjct: 1151 atagacctcgaaaactcctcgagctccaagcatcttcacaatcttatagtcattgaatcc 1092 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||||||| ||| || || |||| || | ||| ||||| ||||||||||| || || Sbjct: 1091 tgctttcaagaacagatctcgccaatccctttcatctcgctgccggcctcttgtattgac 1032 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccctaatgaaggccc 306 | ||| ||||| ||||||| |||||||| |||||||||||||| |||| |||||| || Sbjct: 1031 caacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggtcc 972 Query: 307 caccacaatatctataatgatcacctttcctccctcctcatgtgaaggaatggcatccct 366 |||| || ||||| ||||| ||||| ||||||||||| |||| |||||||| | || Sbjct: 971 aaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggcctttct 912 Query: 367 acattgagacaagatcttgacacagtcctcgtcactccagtggtgcagcacaagcttgag 426 || |||| ||||||||| || || || || || ||||||||||||| ||||||||||| Sbjct: 911 gcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttgag 852 Query: 427 catcaccgcctgagacttggggacggagtggaacaagtcaccagcgacacagttgacga 485 |||||| || |||| | || |||| ||||||||||||||| || ||| |||| |||| Sbjct: 851 catcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacga 793
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 149 bits (75), Expect = 1e-32 Identities = 288/359 (80%) Strand = Plus / Minus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 |||||||||||| || || || ||||| || |||| ||||||||||||||| |||| || Sbjct: 1156 atagacctcgaaaactcctcgagctccaagcatcttcacaatcttatagtcattgaatcc 1097 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||||||| ||| || || |||| || | ||| ||||| ||||||||||| || || Sbjct: 1096 tgctttcaagaacagatctcgccaatccctttcatctcgctgccggcctcttgtattgac 1037 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccctaatgaaggccc 306 | ||| ||||| ||||||| |||||||| |||||||||||||| |||| |||||| || Sbjct: 1036 caacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggtcc 977 Query: 307 caccacaatatctataatgatcacctttcctccctcctcatgtgaaggaatggcatccct 366 |||| || ||||| ||||| ||||| ||||||||||| |||| |||||||| | || Sbjct: 976 aaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggcctttct 917 Query: 367 acattgagacaagatcttgacacagtcctcgtcactccagtggtgcagcacaagcttgag 426 || |||| ||||||||| || || || || || ||||||||||||| ||||||||||| Sbjct: 916 gcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagcttgag 857 Query: 427 catcaccgcctgagacttggggacggagtggaacaagtcaccagcgacacagttgacga 485 |||||| || |||| | || |||| ||||||||||||||| || ||| |||| |||| Sbjct: 856 catcacggcttgagccggtggcacggtgtggaacaagtcacctgcaacatagttaacga 798
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 119 bits (60), Expect = 9e-24 Identities = 237/296 (80%) Strand = Plus / Minus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 |||||||||||| || || || ||||| || |||| ||||||||||||||| |||| || Sbjct: 123158 atagacctcgaaaactcctcgagctccaagcatcttcacaatcttatagtcattgaatcc 123099 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||||||| ||| || || |||| || | ||| ||||| ||||||||||| || || Sbjct: 123098 tgctttcaagaacagatctcgccaatccctttcatctcgctgccggcctcttgtattgac 123039 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccctaatgaaggccc 306 | ||| ||||| ||||||| |||||||| |||||||||||||| |||| |||||| || Sbjct: 123038 caacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggtcc 122979 Query: 307 caccacaatatctataatgatcacctttcctccctcctcatgtgaaggaatggcatccct 366 |||| || ||||| ||||| ||||| ||||||||||| |||| |||||||| | || Sbjct: 122978 aaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggcctttct 122919 Query: 367 acattgagacaagatcttgacacagtcctcgtcactccagtggtgcagcacaagct 422 || |||| ||||||||| || || || || || ||||||||||||| ||||||| Sbjct: 122918 gcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagct 122863 Score = 111 bits (56), Expect = 2e-21 Identities = 140/168 (83%) Strand = Plus / Minus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 ||||||||||||||| | || || || |||||||| |||||||||||||||||||| || Sbjct: 64472 atagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcc 64413 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||| ||||||| || |||||||| ||||| || | || ||||| ||||| || ||||| Sbjct: 64412 tgctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcac 64353 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccc 294 | ||||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 64352 catcatgagcatgtccatcatgagctgcgcttcgaacattacaggccc 64305
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 119 bits (60), Expect = 9e-24 Identities = 237/296 (80%) Strand = Plus / Minus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 |||||||||||| || || || ||||| || |||| ||||||||||||||| |||| || Sbjct: 8907 atagacctcgaaaactcctcgagctccaagcatcttcacaatcttatagtcattgaatcc 8848 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||||||| ||| || || |||| || | ||| ||||| ||||||||||| || || Sbjct: 8847 tgctttcaagaacagatctcgccaatccctttcatctcgctgccggcctcttgtattgac 8788 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccctaatgaaggccc 306 | ||| ||||| ||||||| |||||||| |||||||||||||| |||| |||||| || Sbjct: 8787 caacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggtcc 8728 Query: 307 caccacaatatctataatgatcacctttcctccctcctcatgtgaaggaatggcatccct 366 |||| || ||||| ||||| ||||| ||||||||||| |||| |||||||| | || Sbjct: 8727 aaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggcctttct 8668 Query: 367 acattgagacaagatcttgacacagtcctcgtcactccagtggtgcagcacaagct 422 || |||| ||||||||| || || || || || ||||||||||||| ||||||| Sbjct: 8667 gcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagct 8612
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 119 bits (60), Expect = 9e-24 Identities = 237/296 (80%) Strand = Plus / Plus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 |||||||||||| || || || ||||| || |||| ||||||||||||||| |||| || Sbjct: 11490630 atagacctcgaaaactcctcgagctccaagcatcttcacaatcttatagtcattgaatcc 11490689 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||||||| ||| || || |||| || | ||| ||||| ||||||||||| || || Sbjct: 11490690 tgctttcaagaacagatctcgccaatccctttcatctcgctgccggcctcttgtattgac 11490749 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccctaatgaaggccc 306 | ||| ||||| ||||||| |||||||| |||||||||||||| |||| |||||| || Sbjct: 11490750 caacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggtcc 11490809 Query: 307 caccacaatatctataatgatcacctttcctccctcctcatgtgaaggaatggcatccct 366 |||| || ||||| ||||| ||||| ||||||||||| |||| |||||||| | || Sbjct: 11490810 aaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggcctttct 11490869 Query: 367 acattgagacaagatcttgacacagtcctcgtcactccagtggtgcagcacaagct 422 || |||| ||||||||| || || || || || ||||||||||||| ||||||| Sbjct: 11490870 gcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagct 11490925 Score = 111 bits (56), Expect = 2e-21 Identities = 140/168 (83%) Strand = Plus / Plus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 ||||||||||||||| | || || || |||||||| |||||||||||||||||||| || Sbjct: 11549316 atagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcc 11549375 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||| ||||||| || |||||||| ||||| || | || ||||| ||||| || ||||| Sbjct: 11549376 tgctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcac 11549435 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccc 294 | ||||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 11549436 catcatgagcatgtccatcatgagctgcgcttcgaacattacaggccc 11549483 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 128 tagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccct 187 |||||||| |||||||| || ||||| |||||||| ||||| || ||||||||||| ||| Sbjct: 11353892 tagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaagcct 11353951 Query: 188 gctttcatgaagagctcatgccagtcattctc 219 ||||| ||||||| ||| |||| |||||||| Sbjct: 11353952 gctttgctgaagagatcacgccaatcattctc 11353983 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 386 acacagtcctcgtcactccagtggtgcagcacaagct 422 ||||| |||||||||||||||||||| |||||||||| Sbjct: 11329856 acacaatcctcgtcactccagtggtgaagcacaagct 11329892 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 164 acaatcttatagtcactgaaccctgctttcatgaagagctcatgccagtcatt 216 ||||||||||||| | |||| ||||||||| ||||||| ||| |||||||||| Sbjct: 11329637 acaatcttatagttattgaagcctgctttcttgaagagatcacgccagtcatt 11329689 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 157 tttcttgacaatcttatagtcactgaaccctgctttcatgaagagctcatgccagtcatt 216 |||||| |||||||| ||||| ||||| ||| ||||||||||||| || |||| ||||| Sbjct: 11294563 tttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaatcatt 11294622 Query: 217 ctc 219 ||| Sbjct: 11294623 ctc 11294625 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 158 ttcttgacaatcttatagtcactgaaccctgct 190 ||||| |||||||||||||||||||| |||||| Sbjct: 11352035 ttcttcacaatcttatagtcactgaagcctgct 11352067 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Plus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaa 183 |||||||||||| || | || |||||||| |||||| | ||||||||||||||||| Sbjct: 7137531 atagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactgaa 7137587
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 119 bits (60), Expect = 9e-24 Identities = 237/296 (80%) Strand = Plus / Plus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 |||||||||||| || || || ||||| || |||| ||||||||||||||| |||| || Sbjct: 11569819 atagacctcgaaaactcctcgagctccaagcatcttcacaatcttatagtcattgaatcc 11569878 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||||||| ||| || || |||| || | ||| ||||| ||||||||||| || || Sbjct: 11569879 tgctttcaagaacagatctcgccaatccctttcatctcgctgccggcctcttgtattgac 11569938 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccctaatgaaggccc 306 | ||| ||||| ||||||| |||||||| |||||||||||||| |||| |||||| || Sbjct: 11569939 caacatcagcatatccatcatcagctgggcttcaaacattactggtcctagtgaaggtcc 11569998 Query: 307 caccacaatatctataatgatcacctttcctccctcctcatgtgaaggaatggcatccct 366 |||| || ||||| ||||| ||||| ||||||||||| |||| |||||||| | || Sbjct: 11569999 aaccagtatctctatgatgatgaccttccctccctcctctcgtgatggaatggcctttct 11570058 Query: 367 acattgagacaagatcttgacacagtcctcgtcactccagtggtgcagcacaagct 422 || |||| ||||||||| || || || || || ||||||||||||| ||||||| Sbjct: 11570059 gcactgagtcaagatcttcacgcaatcatcatcgctccagtggtgcaatacaagct 11570114 Score = 111 bits (56), Expect = 2e-21 Identities = 140/168 (83%) Strand = Plus / Plus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccc 186 ||||||||||||||| | || || || |||||||| |||||||||||||||||||| || Sbjct: 11628505 atagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcc 11628564 Query: 187 tgctttcatgaagagctcatgccagtcattctcagtacgctgacggcctcttgtgttcac 246 |||| ||||||| || |||||||| ||||| || | || ||||| ||||| || ||||| Sbjct: 11628565 tgctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcac 11628624 Query: 247 aagcatgagcatgtccatcaaaagctgggcctcaaacattactggccc 294 | ||||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 11628625 catcatgagcatgtccatcatgagctgcgcttcgaacattacaggccc 11628672 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 128 tagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccct 187 |||||||| |||||||| || ||||| |||||||| ||||| || ||||||||||| ||| Sbjct: 11433081 tagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaagcct 11433140 Query: 188 gctttcatgaagagctcatgccagtcattctc 219 ||||| ||||||| ||| |||| |||||||| Sbjct: 11433141 gctttgctgaagagatcacgccaatcattctc 11433172 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 386 acacagtcctcgtcactccagtggtgcagcacaagct 422 ||||| |||||||||||||||||||| |||||||||| Sbjct: 11409045 acacaatcctcgtcactccagtggtgaagcacaagct 11409081 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 164 acaatcttatagtcactgaaccctgctttcatgaagagctcatgccagtcatt 216 ||||||||||||| | |||| ||||||||| ||||||| ||| |||||||||| Sbjct: 11408826 acaatcttatagttattgaagcctgctttcttgaagagatcacgccagtcatt 11408878 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 157 tttcttgacaatcttatagtcactgaaccctgctttcatgaagagctcatgccagtcatt 216 |||||| |||||||| ||||| ||||| ||| ||||||||||||| || |||| ||||| Sbjct: 11373752 tttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaatcatt 11373811 Query: 217 ctc 219 ||| Sbjct: 11373812 ctc 11373814 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 158 ttcttgacaatcttatagtcactgaaccctgct 190 ||||| |||||||||||||||||||| |||||| Sbjct: 11431224 ttcttcacaatcttatagtcactgaagcctgct 11431256 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Plus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaa 183 |||||||||||| || | || |||||||| |||||| | ||||||||||||||||| Sbjct: 7203502 atagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactgaa 7203558
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 79.8 bits (40), Expect = 8e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 128 tagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaaccct 187 |||||||| |||||||| || ||||| |||||||| ||||| || ||||||||||| ||| Sbjct: 140250 tagacctcaaagacgcctcgagctcccagtttcttcacaatattgtagtcactgaagcct 140309 Query: 188 gctttcatgaagagctcatgccagtcattctc 219 ||||| ||||||| ||| |||| |||||||| Sbjct: 140310 gctttgctgaagagatcacgccaatcattctc 140341 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 386 acacagtcctcgtcactccagtggtgcagcacaagct 422 ||||| |||||||||||||||||||| |||||||||| Sbjct: 116214 acacaatcctcgtcactccagtggtgaagcacaagct 116250 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 164 acaatcttatagtcactgaaccctgctttcatgaagagctcatgccagtcatt 216 ||||||||||||| | |||| ||||||||| ||||||| ||| |||||||||| Sbjct: 115995 acaatcttatagttattgaagcctgctttcttgaagagatcacgccagtcatt 116047 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 157 tttcttgacaatcttatagtcactgaaccctgctttcatgaagagctcatgccagtcatt 216 |||||| |||||||| ||||| ||||| ||| ||||||||||||| || |||| ||||| Sbjct: 80921 tttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaatcatt 80980 Query: 217 ctc 219 ||| Sbjct: 80981 ctc 80983 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 158 ttcttgacaatcttatagtcactgaaccctgct 190 ||||| |||||||||||||||||||| |||||| Sbjct: 138393 ttcttcacaatcttatagtcactgaagcctgct 138425
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 386 acacagtcctcgtcactccagtggtgcagcacaagcttgagcat 429 ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 909 acacaatcctcgtcactccagtggtgaagcacaagcttgagcat 866 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 164 acaatcttatagtcactgaaccctgctttcatgaagagctcatgccagtcatt 216 ||||||||||||| | |||| ||||||||| ||||||| ||| |||||||||| Sbjct: 1128 acaatcttatagttattgaagcctgctttcttgaagagatcacgccagtcatt 1076
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA sequence Length = 770 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 155 agtttcttgacaatcttatagtcactgaaccctgctttc 193 |||||||||||||||||||||| || |||||||||||| Sbjct: 478 agtttcttgacaatcttatagttgctaaaccctgctttc 440 Score = 46.1 bits (23), Expect = 0.11 Identities = 85/103 (82%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 379 gatcttgacacagtcctcgtcactccagtggtgcagcacaagcttgagcatcaccgcctg 438 |||||||| || |||||||| |||||| ||| || |||||||||||||| || ||||| Sbjct: 257 gatcttgatgcaatcctcgtcgctccagaagtgtagaacaagcttgagcatgacggcctg 198 Query: 439 agacttg-gggacggagtggaacaagtcaccagcgacacagtt 480 || || | ||||||| ||||| | ||||||||||||| |||| Sbjct: 197 ag-ctggtgggacggtatggaagaggtcaccagcgacatagtt 156
>gb|DQ428476.1| Sorghum propinquum locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428475.1| Sorghum bicolor voucher PI585454 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428474.1| Sorghum bicolor voucher PI267539 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428473.1| Sorghum bicolor voucher PI267408 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428472.1| Sorghum bicolor voucher PI221607 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428471.1| Sorghum bicolor voucher PI152702 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428470.1| Sorghum bicolor voucher NSL92371 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428469.1| Sorghum bicolor voucher NSL87902b locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428468.1| Sorghum bicolor voucher NSL87902a locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428467.1| Sorghum bicolor voucher NSL87666 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428466.1| Sorghum bicolor voucher NSL77217 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428465.1| Sorghum bicolor voucher NSL77034 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428464.1| Sorghum bicolor voucher NSL56174 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428463.1| Sorghum bicolor voucher NSL56003 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428462.1| Sorghum bicolor voucher NSL55243 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428461.1| Sorghum bicolor voucher NSL51365 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428460.1| Sorghum bicolor voucher NSL51030b locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428459.1| Sorghum bicolor voucher NSL51030a locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|DQ428458.1| Sorghum bicolor voucher NSL50875 locus PRC1113 genomic sequence Length = 666 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 389 cagtcctcgtcactccagtggtgcagcacaagct 422 |||||||| ||| ||||||||||||||||||||| Sbjct: 637 cagtcctcatcagtccagtggtgcagcacaagct 604
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Minus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaa 183 |||||||||||| || | || |||||||| |||||| | ||||||||||||||||| Sbjct: 45024 atagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactgaa 44968
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 50.1 bits (25), Expect = 0.007 Identities = 49/57 (85%) Strand = Plus / Plus Query: 127 atagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtcactgaa 183 |||||||||||| || | || |||||||| |||||| | ||||||||||||||||| Sbjct: 50751 atagacctcgaacacagctcgagctccgagcttcttggcgatcttatagtcactgaa 50807
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 239 gtgttcacaagcatgagcatgtccatcaaaagctgggcctc 279 |||||||| | ||||||||||||||||| ||||||||||| Sbjct: 991 gtgttcaccatcatgagcatgtccatcagcagctgggcctc 951 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Minus Query: 379 gatcttgacacagtcctcgtcactccagtggtgcagcacaagcttgagcatcaccgcctg 438 ||||||||| ||||| ||||| |||||| |||||| || ||||||||||| || ||||| Sbjct: 851 gatcttgacgcagtcgtcgtcgctccagaagtgcaggacgagcttgagcatgacagcctg 792 Score = 44.1 bits (22), Expect = 0.44 Identities = 43/50 (86%) Strand = Plus / Minus Query: 128 tagacctcgaagacgccccgtgctccgagtttcttgacaatcttatagtc 177 |||||||||| ||| || || ||||||| ||||||||||| ||| ||||| Sbjct: 1102 tagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtc 1053
>dbj|AP000056.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 27/28, complete sequence Length = 100000 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 22 ttcattctaagcacacataattaa 45 |||||||||||||||||||||||| Sbjct: 31572 ttcattctaagcacacataattaa 31595
>dbj|BS000192.1| Pan troglodytes chromosome 22 clone:PTB-125M11, map 22, complete sequences Length = 189269 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 22 ttcattctaagcacacataattaa 45 |||||||||||||||||||||||| Sbjct: 54679 ttcattctaagcacacataattaa 54702
>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105 Length = 340000 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 22 ttcattctaagcacacataattaa 45 |||||||||||||||||||||||| Sbjct: 312443 ttcattctaagcacacataattaa 312466
>dbj|AP000330.3| Homo sapiens genomic DNA, chromosome 21 clone:RP1-140K16, complete sequence Length = 170368 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 22 ttcattctaagcacacataattaa 45 |||||||||||||||||||||||| Sbjct: 58032 ttcattctaagcacacataattaa 58055
>dbj|AP000171.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B2344F14-f50E8, segment 7/9, complete sequence Length = 100000 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 22 ttcattctaagcacacataattaa 45 |||||||||||||||||||||||| Sbjct: 22202 ttcattctaagcacacataattaa 22225
>ref|XM_425057.1| PREDICTED: Gallus gallus similar to T-cell receptor delta chain precursor (LOC427486), mRNA Length = 687 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 344 tcatgtgaaggaatggcatccctaca 369 ||||||||||||| |||||||||||| Sbjct: 84 tcatgtgaaggaaaggcatccctaca 109
>emb|AL606527.6| Human DNA sequence from clone RP11-454G24 on chromosome 1 Contains a alcohol dehydrogenase 5 (class III) chi polypeptide (ADH5) pseudogene, complete sequence Length = 179964 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 323 atgatcacctttcctccctcctcat 347 |||||||| |||||||||||||||| Sbjct: 77644 atgatcacttttcctccctcctcat 77620
>gb|AC093431.2| Homo sapiens chromosome 1 clone RP11-574N2, complete sequence Length = 164454 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 atgatcacctttcctccctcctcat 347 |||||||| |||||||||||||||| Sbjct: 102296 atgatcacttttcctccctcctcat 102320
>gb|AY110678.1| Zea mays CL33606_1 mRNA sequence Length = 830 Score = 42.1 bits (21), Expect = 1.8 Identities = 39/45 (86%) Strand = Plus / Plus Query: 173 tagtcactgaaccctgctttcatgaagagctcatgccagtcattc 217 ||||||||||| ||||||||| || ||| ||| ||||||||||| Sbjct: 384 tagtcactgaaacctgctttctggatgaggtcacgccagtcattc 428 Score = 40.1 bits (20), Expect = 6.9 Identities = 36/40 (90%), Gaps = 1/40 (2%) Strand = Plus / Plus Query: 379 gatcttgacacagtcctcgtcact-ccagtggtgcagcac 417 |||||| || |||||||| ||||| ||||||||||||||| Sbjct: 590 gatcttcacgcagtcctcatcactaccagtggtgcagcac 629
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ggcactctttttattcattc 28 |||||||||||||||||||| Sbjct: 1130634 ggcactctttttattcattc 1130615
>ref|XM_873168.1| PREDICTED: Bos taurus similar to ProSAPiP1 protein, transcript variant 2 (LOC512397), mRNA Length = 4612 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aaggccccaccacaatatct 319 |||||||||||||||||||| Sbjct: 90 aaggccccaccacaatatct 109
>ref|XM_660442.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.70090) partial mRNA Length = 1968 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 cattgagacaagatcttgacacag 391 ||||||||||||||||||| |||| Sbjct: 1888 cattgagacaagatcttgagacag 1865
>gb|AC146757.19| Medicago truncatula clone mth2-16n21, complete sequence Length = 135915 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 cacaatatctataatgatcacctttcct 337 |||||||||||| |||||||| |||||| Sbjct: 91192 cacaatatctattatgatcacttttcct 91219
>gb|AC147536.12| Medicago truncatula clone mth2-9l3, complete sequence Length = 111486 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 cacaatatctataatgatcacctttcct 337 |||||||||||| |||||||| |||||| Sbjct: 66760 cacaatatctattatgatcacttttcct 66787
>ref|XM_628261.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_740), partial mRNA Length = 4158 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 cattgagacaagatcttgacacag 391 ||||||||||||||||||| |||| Sbjct: 1881 cattgagacaagatcttgagacag 1858
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 308 accacaatatctataatgatcacctttcctcc 339 ||||||| |||||| || |||||||||||||| Sbjct: 14758640 accacaacatctatgattatcacctttcctcc 14758671
>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22, complete sequence Length = 128256 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 380 atcttgacacagtcctcgtcactccagt 407 |||||||| ||||| ||||||||||||| Sbjct: 62059 atcttgacgcagtcatcgtcactccagt 62086
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 308 accacaatatctataatgatcacctttcctcc 339 ||||||| |||||| || |||||||||||||| Sbjct: 14712923 accacaacatctatgattatcacctttcctcc 14712954
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133207 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 308 accacaatatctataatgatcacctttcctcc 339 ||||||| |||||| || |||||||||||||| Sbjct: 60160 accacaacatctatgattatcacctttcctcc 60129 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,181,570 Number of Sequences: 3902068 Number of extensions: 4181570 Number of successful extensions: 79927 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79688 Number of HSP's gapped (non-prelim): 236 length of query: 513 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 490 effective length of database: 17,143,297,704 effective search space: 8400215874960 effective search space used: 8400215874960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
