ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds 842 0.0
2emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nucle... 333 3e-88
3dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, compl... 192 8e-46
4gb|AY108503.1| Zea mays PCO102923 mRNA sequence 80 8e-12
5ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
6emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
9dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
10gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CI... 44 0.46
11gb|AC020926.8| Homo sapiens chromosome 16 clone CTD-2152G12, com... 44 0.46
12gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.8
13gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 42 1.8
14emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 1.8
15gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, co... 42 1.8
16gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, c... 42 1.8
17gb|AY501269.1| HIV-1 isolate LTNP3.2-13 from Spain envelope glyc... 40 7.2
18gb|AY501216.1| HIV-1 isolate LTNP1.2-9 from Spain envelope glyco... 40 7.2
19gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.2
20gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.2
21ref|XM_721511.1| Plasmodium yoelii yoelii str. 17XNL CCAAT-box D... 40 7.2
22ref|XM_536374.2| PREDICTED: Canis familiaris similar to CG14043-... 40 7.2
23emb|BX296557.35| Zebrafish DNA sequence from clone CH211-284O1 i... 40 7.2
24emb|AJ006287.1|HIV6287 Human immnunodeficiency virus type 1 comp... 40 7.2
25gb|AF293355.2| Streptomyces collinus DSM2012 rubrinomycin gene c... 40 7.2
26gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, co... 40 7.2
27gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of... 40 7.2
28gb|AC011348.4| Homo sapiens chromosome 5 clone CTC-303E13, compl... 40 7.2
29emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 ... 40 7.2
30ref|NM_074429.2| Caenorhabditis elegans Serpentine Receptor, cla... 40 7.2
31emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 ... 40 7.2
32gb|AC022710.10|AC022710 Homo sapiens chromosome 15, clone RP11-9... 40 7.2
33gb|AF256210.1|AF256210 HIV-1 clone S61K15 from Spain, partial ge... 40 7.2
34gb|AF256209.1|AF256209 HIV-1 clone S61K1 from Spain, partial genome 40 7.2
35gb|AF256207.1|AF256207 HIV-1 clone S61G7 from Spain, complete ge... 40 7.2
36gb|AF256206.1|AF256206 HIV-1 clone S61G1 from Spain, complete ge... 40 7.2
37gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombosp... 40 7.2
38emb|Z81117.1|CET06E6 Caenorhabditis elegans Cosmid T06E6, comple... 40 7.2
39gb|U00089.2| Mycoplasma pneumoniae M129, complete genome 40 7.2 
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds
          Length = 1180

 Score =  842 bits (425), Expect = 0.0
 Identities = 488/509 (95%)
 Strand = Plus / Minus

                                                                        
Query: 24   ctagtggaaatgaaaatgacacaattgtgtcaatcaacaatacatcgccttacacgtacg 83
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1180 ctagtggaaatgaaaatgacacaattgtgtcaatcaacaatacattgccttacacgtacg 1121

                                                                        
Query: 84   tacatataggtacaatgatttgctgcggcagtacgtgtaggtagaaaggtttcctgcagc 143
            |||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct: 1120 tacatataggtacaatgatttgctgcggcagtacgtgtagatacaaagatttcctgcagc 1061

                                                                        
Query: 144  agcgaatctaaagccgttttggtggatggataacaaatctaatctcgaattaggtgattt 203
            ||||||||||| |||| ||||||| |||||||| |||| |||||||||||||||||||||
Sbjct: 1060 agcgaatctaaggccgctttggtgaatggataagaaatttaatctcgaattaggtgattt 1001

                                                                        
Query: 204  tggcgaagctacaacgttggtcagacaggatgatcttattatacattgttctccctttat 263
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 tggcgaagctataacgttggtcagacaggatgatcttattatacattgttctccctttat 941

                                                                        
Query: 264  ttcgacgaaattctatcgatcagatgctctgcagcctgccgttcccgctgaagatcctgt 323
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 940  ttcgacgaaatagtatcgatcagatgctctgcagcctgccgttcccgctgaagatccggt 881

                                                                        
Query: 324  tgaggatcgccgccagcctcacgcccccctgagcgagcctcttctgaacgaccggcagcg 383
            ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 880  tgaggatggccgccagcctcaagcccccctgggcgagcctcttctgaacgaccggcagcg 821

                                                                        
Query: 384  ccttgaagtagtactcatctcctagggtgtcgtcctgctcgacgccctcgtacgcgtcgc 443
            | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 820  ctttgaagtagtactcatctcctagggtgtcgtcctgctcgacgccctcgtaggcgtcgc 761

                                                                        
Query: 444  atgccagcaccgcgctctcctgggcgtacttctcagcgcaggtcgtggttttgctgcggc 503
            ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 760  atgccagcaccgcgctctcctgggcgtacttttcggcgcaggtcgtggttttgctgcggc 701

                                         
Query: 504  acgcctcccactgcttctcctcactggac 532
            ||| |||||||||||||||||||||||||
Sbjct: 700  acgtctcccactgcttctcctcactggac 672
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>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene)
          Length = 1139

 Score =  333 bits (168), Expect = 3e-88
 Identities = 261/290 (90%), Gaps = 4/290 (1%)
 Strand = Plus / Minus

                                                                       
Query: 246 acattgttctccctttatttcgacgaaattctatcgatcagatgctctgcagcctgccgt 305
           ||||| |||| |||||||||||| ||||||  | ||||||||||||||||||| ||||||
Sbjct: 967 acattcttcttcctttatttcgatgaaattgca-cgatcagatgctctgcagcttgccgt 909

                                                                       
Query: 306 tc---ccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcc 362
           ||   ||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||
Sbjct: 908 tcttcccgctgaagatccggttgaggatcgccgccagcctgacgccgccctgagcgatcc 849

                                                                       
Query: 363 tcttctgaacgaccggcagcgccttgaagtagtactcatctcctagggtgtcgtcctgct 422
            |||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||
Sbjct: 848 gcttctgaacgaccggcagcgccttgaagtagtactcatctcctaaggtggagtcctgct 789

                                                                       
Query: 423 cgacgccctcgtacgcgtcgcatgccagcaccgcgctctcctgggcgtacttctcagcgc 482
            |||||||| |||||||||||| |||||||| || |||||||  |||||||| |||||||
Sbjct: 788 tgacgcccttgtacgcgtcgcaggccagcactgcactctcctcagcgtacttgtcagcgc 729

                                                             
Query: 483 aggtcgtggttttgctgcggcacgcctcccactgcttctcctcactggac 532
           ||||| ||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 aggtcttggttctgctgcggcacgcctcccactgcttctcctcgctggac 679



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 61   caatacatcgccttacacgtacgtacatataggtacaatgatttgct 107
            ||||||||| || ||||| ||||| |||| || ||||||||||||||
Sbjct: 1112 caatacatcaccatacacttacgttcatacagatacaatgatttgct 1066
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>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds
          Length = 1283

 Score =  192 bits (97), Expect = 8e-46
 Identities = 218/257 (84%), Gaps = 6/257 (2%)
 Strand = Plus / Minus

                                                                       
Query: 282 atcagatgctctgcagcctgc---cgttcccgctgaagatcctgttgaggatcgccgcca 338
           |||||||||||||||||||||     ||||| |||||||||  ||| |||||| ||||||
Sbjct: 956 atcagatgctctgcagcctgctattcttcccactgaagatctggttaaggatcaccgcca 897

                                                                       
Query: 339 gcctcacgcccccctgagcgagcctcttctgaacgaccggcagcgccttgaagtagtact 398
           |||||||||| |||||||| | ||||||||  || ||||||| ||||  |||||| || |
Sbjct: 896 gcctcacgcctccctgagctatcctcttctcgacaaccggcaacgcccggaagtaatagt 837

                                                                       
Query: 399 catctcctagggtgtcgtcctgctcgacgccctcgtacgcgtcgcatgccagcaccgcgc 458
           | ||||||| ||||||| | |||||||||||||||||||||||||| |||||||  ||||
Sbjct: 836 cgtctcctaaggtgtcgccttgctcgacgccctcgtacgcgtcgcaggccagcaatgcgc 777

                                                                       
Query: 459 tctcctgggcgtacttctcagcgcagg---tcgtggttttgctgcggcacgcctcccact 515
           |||||| ||||||||| || |||||||   || ||||| |||||| |||||||||||| |
Sbjct: 776 tctccttggcgtacttttcggcgcaggtgatcttggttctgctgccgcacgcctcccatt 717

                            
Query: 516 gcttctcctcactggac 532
           |||||||||| ||||||
Sbjct: 716 gcttctcctcgctggac 700
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>gb|AY108503.1| Zea mays PCO102923 mRNA sequence
          Length = 476

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                       
Query: 317 atcctgttgaggatcgccgccagcctcacgcccccctgagcgagcctcttctgaacgacc 376
           ||||||||||||||||| |||||||| ||||| || || |||| |||||||||||| |||
Sbjct: 105 atcctgttgaggatcgcggccagcctgacgcctccttgcgcgatcctcttctgaaccacc 46

                   
Query: 377 ggcagcgc 384
           ||||||||
Sbjct: 45  ggcagcgc 38
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>ref|XM_474151.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 304 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 363
           ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 855 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 796

                             
Query: 364 cttctgaacgaccggcag 381
           ||||||||| || |||||
Sbjct: 795 cttctgaacaacaggcag 778
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>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                         
Query: 304   gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 363
             ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 62466 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 62407

                               
Query: 364   cttctgaacgaccggcag 381
             ||||||||| || |||||
Sbjct: 62406 cttctgaacaacaggcag 62389
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                            
Query: 304      gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 363
                ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 33290205 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 33290146

                                  
Query: 364      cttctgaacgaccggcag 381
                ||||||||| || |||||
Sbjct: 33290145 cttctgaacaacaggcag 33290128
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>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
           insert sequence
          Length = 1146

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 304 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 363
           ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 881 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 822

                             
Query: 364 cttctgaacgaccggcag 381
           ||||||||| || |||||
Sbjct: 821 cttctgaacaacaggcag 804
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>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full
           insert sequence
          Length = 484

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                       
Query: 304 gttcccgctgaagatcctgttgaggatcgccgccagcctcacgcccccctgagcgagcct 363
           ||||||||||||||||| |||||| || || || ||||||||||| || ||||| | |||
Sbjct: 256 gttcccgctgaagatccggttgagtattgcagcaagcctcacgccaccttgagcaatcct 197

                             
Query: 364 cttctgaacgaccggcag 381
           ||||||||| || |||||
Sbjct: 196 cttctgaacaacaggcag 179
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>gb|AC004381.1|HUAC004381 Homo sapiens Chromosome 16 BAC clone CIT987SK-44M2, complete sequence
          Length = 213541

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 390   agtagtactcatctcctagggt 411
             ||||||||||||||||||||||
Sbjct: 28416 agtagtactcatctcctagggt 28395
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>gb|AC020926.8| Homo sapiens chromosome 16 clone CTD-2152G12, complete sequence
          Length = 93288

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 390   agtagtactcatctcctagggt 411
             ||||||||||||||||||||||
Sbjct: 47555 agtagtactcatctcctagggt 47534
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 326     aggatcgccgccagcctcacgcccc 350
               ||||||||||||||| |||||||||
Sbjct: 3331322 aggatcgccgccagcgtcacgcccc 3331346
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 288     tgctctgcagcctgccgttcccgct 312
               |||||||||||||||||| ||||||
Sbjct: 2127589 tgctctgcagcctgccgtgcccgct 2127565
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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 259     tttatttcgacgaaattctat 279
               |||||||||||||||||||||
Sbjct: 1835409 tttatttcgacgaaattctat 1835429
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>gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, complete sequence
          Length = 156293

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 501   ggcacgcctcccactgcttct 521
             |||||||||||||||||||||
Sbjct: 91578 ggcacgcctcccactgcttct 91598
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>gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, complete sequence
          Length = 189238

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 501   ggcacgcctcccactgcttct 521
             |||||||||||||||||||||
Sbjct: 39689 ggcacgcctcccactgcttct 39669
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>gb|AY501269.1| HIV-1 isolate LTNP3.2-13 from Spain envelope glycoprotein (env)
           gene, partial cds
          Length = 585

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  ggaaatgaaaatgacacaat 48
           ||||||||||||||||||||
Sbjct: 376 ggaaatgaaaatgacacaat 395
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>gb|AY501216.1| HIV-1 isolate LTNP1.2-9 from Spain envelope glycoprotein (env)
           gene, partial cds
          Length = 570

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  ggaaatgaaaatgacacaat 48
           ||||||||||||||||||||
Sbjct: 364 ggaaatgaaaatgacacaat 383
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     aaggtttcctgcagcagcga 148
               ||||||||||||||||||||
Sbjct: 2472927 aaggtttcctgcagcagcga 2472908
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     gtttcctgcagcagcgaatc 151
               ||||||||||||||||||||
Sbjct: 3422119 gtttcctgcagcagcgaatc 3422138
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>ref|XM_721511.1| Plasmodium yoelii yoelii str. 17XNL CCAAT-box DNA binding protein
           subunit B (PY06024) partial mRNA
          Length = 3192

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  tggaaatgaaaatgacacaa 47
           ||||||||||||||||||||
Sbjct: 768 tggaaatgaaaatgacacaa 787
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>ref|XM_536374.2| PREDICTED: Canis familiaris similar to CG14043-PA (LOC479232), mRNA
          Length = 2669

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 328 gatcgccgccagcctcacgcccccctgagcga 359
           |||| |||||||||||||| ||||||| ||||
Sbjct: 546 gatcaccgccagcctcacggccccctgggcga 515
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>emb|BX296557.35| Zebrafish DNA sequence from clone CH211-284O1 in linkage group 7,
             complete sequence
          Length = 173360

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   gttcccgctgaagatcctgt 323
             ||||||||||||||||||||
Sbjct: 13671 gttcccgctgaagatcctgt 13652
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>emb|AJ006287.1|HIV6287 Human immnunodeficiency virus type 1 complete proviral genome,
            isolate 89ES061
          Length = 9214

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   ggaaatgaaaatgacacaat 48
            ||||||||||||||||||||
Sbjct: 7018 ggaaatgaaaatgacacaat 7037
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>gb|AF293355.2| Streptomyces collinus DSM2012 rubrinomycin gene cluster, complete
            sequence
          Length = 32634

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 445  tgccagcaccgcgctctcct 464
            ||||||||||||||||||||
Sbjct: 6843 tgccagcaccgcgctctcct 6824
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>gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, complete sequence
          Length = 205998

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    cttacacgtacgtacatata 91
             ||||||||||||||||||||
Sbjct: 48866 cttacacgtacgtacatata 48885
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>gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of the complete genome
          Length = 11136

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 414  cgtcctgctcgacgccctcg 433
            ||||||||||||||||||||
Sbjct: 1985 cgtcctgctcgacgccctcg 1966
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>gb|AC011348.4| Homo sapiens chromosome 5 clone CTC-303E13, complete sequence
          Length = 110104

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   cattgttctccctttatttc 266
             ||||||||||||||||||||
Sbjct: 71061 cattgttctccctttatttc 71080
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>emb|BX511027.20| Zebrafish DNA sequence from clone CH211-281P14 in linkage group 14,
              complete sequence
          Length = 198761

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    gttcccgctgaagatcctgt 323
              ||||||||||||||||||||
Sbjct: 126958 gttcccgctgaagatcctgt 126977
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>ref|NM_074429.2| Caenorhabditis elegans Serpentine Receptor, class H family member
           (srh-258) (srh-258) mRNA, complete cds
          Length = 1005

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 30  gaaatgaaaatgacacaattgtgt 53
           ||||||||||||| ||||||||||
Sbjct: 829 gaaatgaaaatgagacaattgtgt 806
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>emb|BX649496.12| Zebrafish DNA sequence from clone CH211-212I24 in linkage group 18,
              complete sequence
          Length = 243552

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    gttcccgctgaagatcctgt 323
              ||||||||||||||||||||
Sbjct: 137491 gttcccgctgaagatcctgt 137472
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>gb|AC022710.10|AC022710 Homo sapiens chromosome 15, clone RP11-90E5, complete sequence
          Length = 186517

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     cttacacgtacgtacatata 91
              ||||||||||||||||||||
Sbjct: 132817 cttacacgtacgtacatata 132836
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>gb|AF256210.1|AF256210 HIV-1 clone S61K15 from Spain, partial genome
          Length = 9039

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   ggaaatgaaaatgacacaat 48
            ||||||||||||||||||||
Sbjct: 7468 ggaaatgaaaatgacacaat 7487
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>gb|AF256209.1|AF256209 HIV-1 clone S61K1 from Spain, partial genome
          Length = 9039

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   ggaaatgaaaatgacacaat 48
            ||||||||||||||||||||
Sbjct: 7468 ggaaatgaaaatgacacaat 7487
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>gb|AF256207.1|AF256207 HIV-1 clone S61G7 from Spain, complete genome
          Length = 9670

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   ggaaatgaaaatgacacaat 48
            ||||||||||||||||||||
Sbjct: 7469 ggaaatgaaaatgacacaat 7488
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>gb|AF256206.1|AF256206 HIV-1 clone S61G1 from Spain, complete genome
          Length = 9670

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   ggaaatgaaaatgacacaat 48
            ||||||||||||||||||||
Sbjct: 7469 ggaaatgaaaatgacacaat 7488
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>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17
              (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene,
              complete sequence
          Length = 371157

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     cttacacgtacgtacatata 91
              ||||||||||||||||||||
Sbjct: 181225 cttacacgtacgtacatata 181206
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>emb|Z81117.1|CET06E6 Caenorhabditis elegans Cosmid T06E6, complete sequence
          Length = 33238

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    gaaatgaaaatgacacaattgtgt 53
             ||||||||||||| ||||||||||
Sbjct: 16487 gaaatgaaaatgagacaattgtgt 16464
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>gb|U00089.2| Mycoplasma pneumoniae M129, complete genome
          Length = 816394

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     gtgtcaatcaacaatacatc 69
              ||||||||||||||||||||
Sbjct: 423289 gtgtcaatcaacaatacatc 423308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,772,383
Number of Sequences: 3902068
Number of extensions: 3772383
Number of successful extensions: 71143
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70885
Number of HSP's gapped (non-prelim): 255
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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