ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188589.1| Oryza sativa (japonica cultivar-group), predic... 145 1e-31
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
3dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
4dbj|AK069655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
5dbj|AK059778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
6gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 78 2e-11
7ref|XM_479013.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
10dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
11dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
12dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
13dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
14emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete ch... 50 0.005
15gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 50 0.005
16gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 50 0.005
17gb|AY842251.1| Chlamydomonas reinhardtii hydroxypyruvate reducta... 46 0.083
18ref|XM_470988.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 44 0.33
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
21dbj|AK070553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
22emb|BX927065.8| Zebrafish DNA sequence from clone CH211-242M18 i... 44 0.33
23emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4,... 44 0.33
24gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.3
25gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 5.1
26gb|AC186172.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 5.1
27emb|BX005403.15| Zebrafish DNA sequence from clone DKEY-81J11 in... 40 5.1
28gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.1
29emb|AL353696.8| Human DNA sequence from clone RP11-560G8 on chro... 40 5.1
30emb|AL391148.1|ATT21H19 Arabidopsis thaliana DNA chromosome 5, B... 40 5.1
31gb|AC158355.2| Mus musculus BAC clone RP24-374N16 from chromosom... 40 5.1
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.1
33dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 5.1
34emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20,... 40 5.1
35emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 ... 40 5.1
36dbj|AK004608.1| Mus musculus adult male lung cDNA, RIKEN full-le... 40 5.1
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.1
38emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in l... 40 5.1
39emb|AL954129.11| Zebrafish DNA sequence from clone CH211-200P22 ... 40 5.1
40gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 5.1
41emb|BX927146.27| Zebrafish DNA sequence from clone DKEY-277I15 i... 40 5.1
42gb|U73744.1|MMU73744 Mus musculus heat shock 70 protein (Hsc70) ... 40 5.1
43emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in... 40 5.1
44emb|X54403.1|MMU14IN8 Mouse U14 snRNA (intron 8 of hsc70 gene) 40 5.1
45emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chr... 40 5.1
46emb|Z30348.1|BMCOLGMR B.mori mRNA for collagen 40 5.1 
>ref|NM_188589.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score =  145 bits (73), Expect = 1e-31
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                       
Query: 194 acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
           ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 917 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 858

                                                                       
Query: 254 ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
            |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 857 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 798

                                                    
Query: 314 ttgggctcgtcctcgaacacgtcaaggcccgccccgccgag 354
           || |||||||||||||||||||| || || || ||||||||
Sbjct: 797 ttcggctcgtcctcgaacacgtccagcccggcgccgccgag 757
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  145 bits (73), Expect = 1e-31
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                           
Query: 194     acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
               ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 7099294 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 7099353

                                                                           
Query: 254     ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
                |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 7099354 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 7099413

                                                        
Query: 314     ttgggctcgtcctcgaacacgtcaaggcccgccccgccgag 354
               || |||||||||||||||||||| || || || ||||||||
Sbjct: 7099414 ttcggctcgtcctcgaacacgtccagcccggcgccgccgag 7099454
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score =  145 bits (73), Expect = 1e-31
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                         
Query: 194   acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
             ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 86874 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 86933

                                                                         
Query: 254   ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
              |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 86934 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 86993

                                                      
Query: 314   ttgggctcgtcctcgaacacgtcaaggcccgccccgccgag 354
             || |||||||||||||||||||| || || || ||||||||
Sbjct: 86994 ttcggctcgtcctcgaacacgtccagcccggcgccgccgag 87034
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>dbj|AK069655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031I17, full
            insert sequence
          Length = 1397

 Score =  145 bits (73), Expect = 1e-31
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                        
Query: 194  acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
            ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 1175 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 1116

                                                                        
Query: 254  ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
             |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 1115 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 1056

                                                     
Query: 314  ttgggctcgtcctcgaacacgtcaaggcccgccccgccgag 354
            || |||||||||||||||||||| || || || ||||||||
Sbjct: 1055 ttcggctcgtcctcgaacacgtccagcccggcgccgccgag 1015
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>dbj|AK059778.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B03, full
            insert sequence
          Length = 1275

 Score =  145 bits (73), Expect = 1e-31
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                        
Query: 194  acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
            ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 1051 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 992

                                                                        
Query: 254  ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
             |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 991  gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 932

                                                     
Query: 314  ttgggctcgtcctcgaacacgtcaaggcccgccccgccgag 354
            || |||||||||||||||||||| || || || ||||||||
Sbjct: 931  ttcggctcgtcctcgaacacgtccagcccggcgccgccgag 891
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 242     gtctcgtgcgtcccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagc 301
               ||||| ||||| |||||  ||||||| |||| |||||| |||||||||||||||||||  
Sbjct: 1827226 gtctcatgcgtgccgctggccacgtgcggcagcagcaccacgttgtcgagcgcgaacaat 1827167

                                                  
Query: 302     gcctcgggcacgttgggctcgtcctcgaacacgtc 336
               || ||||||||||  ||||||  ||||||||||||
Sbjct: 1827166 gcttcgggcacgtgcggctcgcgctcgaacacgtc 1827132
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>ref|XM_479013.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 414

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 308 ggcacgttgggctcgtcctcgaacac 333
           ||||||||||||||||||||||||||
Sbjct: 281 ggcacgttgggctcgtcctcgaacac 256
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 308      ggcacgttgggctcgtcctcgaacac 333
                ||||||||||||||||||||||||||
Sbjct: 21702922 ggcacgttgggctcgtcctcgaacac 21702897
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 308      ggcacgttgggctcgtcctcgaacac 333
                ||||||||||||||||||||||||||
Sbjct: 24318225 ggcacgttgggctcgtcctcgaacac 24318200
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>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 308   ggcacgttgggctcgtcctcgaacac 333
             ||||||||||||||||||||||||||
Sbjct: 51418 ggcacgttgggctcgtcctcgaacac 51393
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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E05
          Length = 137364

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 308    ggcacgttgggctcgtcctcgaacac 333
              ||||||||||||||||||||||||||
Sbjct: 129776 ggcacgttgggctcgtcctcgaacac 129751
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>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0479C12
          Length = 136799

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 308   ggcacgttgggctcgtcctcgaacac 333
             ||||||||||||||||||||||||||
Sbjct: 70492 ggcacgttgggctcgtcctcgaacac 70467
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>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0708B04
          Length = 170523

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 308    ggcacgttgggctcgtcctcgaacac 333
              ||||||||||||||||||||||||||
Sbjct: 163096 ggcacgttgggctcgtcctcgaacac 163071
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>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 298   cagcgcctcgggcacgttgggctcgtcctcgaacacgtcaaggcc 342
             |||||||||||| || |||||||||| |||||| ||||| |||||
Sbjct: 49413 cagcgcctcgggaacattgggctcgttctcgaagacgtcgaggcc 49457
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>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 311   acgttgggctcgtcctcgaacacgtcaag 339
             ||||||||||||| |||||||||||||||
Sbjct: 88546 acgttgggctcgtgctcgaacacgtcaag 88574
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 317    ggctcgtcctcgaacacgtcaaggcccgccccg 349
              |||||||||||||||||||| || |||||||||
Sbjct: 853138 ggctcgtcctcgaacacgtcgagccccgccccg 853106
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>gb|AY842251.1| Chlamydomonas reinhardtii hydroxypyruvate reductase mRNA, partial
           cds
          Length = 931

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 316 gggctcgtcctcgaacacgtcaaggcc 342
           ||||||||||||||||||||| |||||
Sbjct: 774 gggctcgtcctcgaacacgtccaggcc 748
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>ref|XM_470988.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 981

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 308 ggcacgttgggctcgtcctcgaacac 333
           ||||||||||||||||| ||||||||
Sbjct: 824 ggcacgttgggctcgtcgtcgaacac 799
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 317     ggctcgtcctcgaacacgtcaaggcccgcc 346
               |||||| | |||||||||||||||||||||
Sbjct: 3235190 ggctcgccttcgaacacgtcaaggcccgcc 3235219
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 308    ggcacgttgggctcgtcctcgaacac 333
              ||||||||||||||||| ||||||||
Sbjct: 437415 ggcacgttgggctcgtcgtcgaacac 437390
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>dbj|AK070553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059A13, full
           insert sequence
          Length = 1100

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 308 ggcacgttgggctcgtcctcgaacac 333
           ||||||||||||||||| ||||||||
Sbjct: 866 ggcacgttgggctcgtcgtcgaacac 841
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>emb|BX927065.8| Zebrafish DNA sequence from clone CH211-242M18 in linkage group 18,
             complete sequence
          Length = 58110

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 5     aaagaaatcaaatttattaacc 26
             ||||||||||||||||||||||
Sbjct: 39808 aaagaaatcaaatttattaacc 39829
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>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
             complete sequence
          Length = 130249

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 308   ggcacgttgggctcgtcctcgaacac 333
             ||||||||||||||||| ||||||||
Sbjct: 76167 ggcacgttgggctcgtcgtcgaacac 76142
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 278     acgacgttgtcgagcgcgaacagcg 302
               ||||||||||||||| |||||||||
Sbjct: 4344160 acgacgttgtcgagcccgaacagcg 4344184
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 226     cgccatcgcctggcgtgtctcgtgcgtc 253
               ||||||||| ||||| ||||||||||||
Sbjct: 2060854 cgccatcgcatggcgcgtctcgtgcgtc 2060881
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>gb|AC186172.1| Ornithorhynchus anatinus chromosome UNK clone OABb-43A1, complete
              sequence
          Length = 180865

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    tcctcatatacaacacacga 132
              ||||||||||||||||||||
Sbjct: 116863 tcctcatatacaacacacga 116882
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>emb|BX005403.15| Zebrafish DNA sequence from clone DKEY-81J11 in linkage group 17,
             complete sequence
          Length = 74369

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gaaatcaaatttattaacct 27
             ||||||||||||||||||||
Sbjct: 52333 gaaatcaaatttattaacct 52352
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     gtcagcagcggcttcttcag 192
               ||||||||||||||||||||
Sbjct: 1114228 gtcagcagcggcttcttcag 1114247
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>emb|AL353696.8| Human DNA sequence from clone RP11-560G8 on chromosome 9, complete
              sequence
          Length = 181717

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      ccagaaagaaatcaaatttattaa 24
              |||||||||||| |||||||||||
Sbjct: 174585 ccagaaagaaatgaaatttattaa 174562
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>emb|AL391148.1|ATT21H19 Arabidopsis thaliana DNA chromosome 5, BAC clone T21H19 (ESSA project)
          Length = 77311

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tttcattatgatcccggaaa 86
             ||||||||||||||||||||
Sbjct: 45755 tttcattatgatcccggaaa 45774
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>gb|AC158355.2| Mus musculus BAC clone RP24-374N16 from chromosome 9, complete sequence
          Length = 172612

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaagaaatcaaatttattaa 24
             ||||||||||||||||||||
Sbjct: 94345 aaagaaatcaaatttattaa 94326
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 269     ggcaccagcacgacgttgtcgagc 292
               |||||||||||| |||||||||||
Sbjct: 1454649 ggcaccagcacgtcgttgtcgagc 1454672
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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    gttgtcgagcgcgaacagcg 302
              ||||||||||||||||||||
Sbjct: 195709 gttgtcgagcgcgaacagcg 195690
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>emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20, complete sequence
          Length = 179475

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      agaaatcaaatttattaacc 26
              ||||||||||||||||||||
Sbjct: 110909 agaaatcaaatttattaacc 110928
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>emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 in linkage group 3,
             complete sequence
          Length = 228572

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     agaaatcaaatttattaacc 26
             ||||||||||||||||||||
Sbjct: 88131 agaaatcaaatttattaacc 88112
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>dbj|AK004608.1| Mus musculus adult male lung cDNA, RIKEN full-length enriched
            library, clone:1200006C03 product:heat shock 70kD protein
            8, full insert sequence
          Length = 3160

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    aaagaaatcaaatttattaa 24
            ||||||||||||||||||||
Sbjct: 2884 aaagaaatcaaatttattaa 2865
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    cgagcgcgaacagcgcctcg 307
              ||||||||||||||||||||
Sbjct: 817553 cgagcgcgaacagcgcctcg 817572
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>emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6,
             complete sequence
          Length = 254657

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     agaaatcaaatttattaacc 26
             ||||||||||||||||||||
Sbjct: 85434 agaaatcaaatttattaacc 85415
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>emb|AL954129.11| Zebrafish DNA sequence from clone CH211-200P22 in linkage group 24,
              complete sequence
          Length = 161275

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      gaaatcaaatttattaacct 27
              ||||||||||||||||||||
Sbjct: 130269 gaaatcaaatttattaacct 130250
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      tttaccgaccgacgacaaca 64
               ||||||||||||||||||||
Sbjct: 1037720 tttaccgaccgacgacaaca 1037701
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>emb|BX927146.27| Zebrafish DNA sequence from clone DKEY-277I15 in linkage group 22,
             complete sequence
          Length = 70937

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gaaatcaaatttattaacct 27
             ||||||||||||||||||||
Sbjct: 55018 gaaatcaaatttattaacct 55037
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>gb|U73744.1|MMU73744 Mus musculus heat shock 70 protein (Hsc70) gene, complete cds
          Length = 4270

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    aaagaaatcaaatttattaa 24
            ||||||||||||||||||||
Sbjct: 3918 aaagaaatcaaatttattaa 3899
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>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3,
             complete sequence
          Length = 174887

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     agaaatcaaatttattaacc 26
             ||||||||||||||||||||
Sbjct: 21752 agaaatcaaatttattaacc 21771
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>emb|X54403.1|MMU14IN8 Mouse U14 snRNA (intron 8 of hsc70 gene)
          Length = 262

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   aaagaaatcaaatttattaa 24
           ||||||||||||||||||||
Sbjct: 247 aaagaaatcaaatttattaa 228
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>emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chromosome 2, complete
             sequence
          Length = 187308

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    atgatcccggaaaagaaaac 93
             ||||||||||||||||||||
Sbjct: 29621 atgatcccggaaaagaaaac 29602
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>emb|Z30348.1|BMCOLGMR B.mori mRNA for collagen
          Length = 1993

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 caggttacccaggacaaggt 224
           ||||||||||||||||||||
Sbjct: 707 caggttacccaggacaaggt 726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,081,173
Number of Sequences: 3902068
Number of extensions: 3081173
Number of successful extensions: 64097
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63266
Number of HSP's gapped (non-prelim): 831
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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