ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DDHC_RHOSU (Q8GPG1) Dimethylsulfide dehydrogenase gamma subunit ... 29 2.9
2PROB_PROMA (Q7VC78) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut... 28 6.5

>DDHC_RHOSU (Q8GPG1) Dimethylsulfide dehydrogenase gamma subunit precursor|
           (Dimethylsulfide heme subunit) (DMS DH gamma subunit)
           (DMS DH heme subunit)
          Length = 265

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 192 AAIDFSNKLDALSYMHVSSDNQSPIVAWF 106
           AAI+FS   D++SYM + +D +SP+  W+
Sbjct: 132 AAIEFSESDDSVSYM-MGTDAESPVNIWY 159



to top

>PROB_PROMA (Q7VC78) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 364

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 1   EKRHNKDPLIKQHATSPLTRLIHSSN*SQALNNGNEPSNNWG 126
           +K ++ DP   + A  P+T  +HSSN    + + +  SNNWG
Sbjct: 169 DKLYSSDPKFDKDA-KPITD-VHSSNEIIQIQSNSNESNNWG 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,315,190
Number of Sequences: 219361
Number of extensions: 389854
Number of successful extensions: 731
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top