ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X99623.1|HVATUB1 H.vulgare mRNA for alpha-tubulin 1 323 1e-85
2ref|XM_507378.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.009
3ref|XM_478815.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
4ref|XM_506424.2| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.009
5gb|BT018929.1| Zea mays clone Contig58.F mRNA sequence 48 0.009
6emb|Z11931.1|OSTUBA1M Oryza sativa mRNA for alpha 1 tubulin 48 0.009
7emb|X91808.1|OSTA274 O.sativa mRNA for alpha-tubulin (clone OSTA... 48 0.009
8emb|X63178.1|ZMALTUB6 Z.mays mRNA for alpha-tubulin 6 48 0.009
9emb|AJ420858.1|ZMA420858 Zea mays partial tua6 gene for alpha tu... 48 0.009
10emb|AJ420857.1|ZMA420857 Zea mays partial mRNA for alpha tubulin... 48 0.009
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.009
12dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.009
13dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.009
14dbj|AK104900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.009
15dbj|AK069140.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.009
16dbj|AK067721.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.009
17emb|AJ437640.1|MSI437640 Miscanthus transmorrisonensis macronucl... 44 0.13
18emb|AJ431263.1|MSI431263 Miscanthus sinensis TUA2 gene for alpha... 44 0.13
19emb|AJ431262.1|MSI431262 Miscanthus sinensis TUA1 gene for alpha... 44 0.13
20gb|AF008122.1|AF008122 Eleusine indica alpha-tubulin 3 (TUA3) mR... 44 0.13
21gb|AC016635.8| Homo sapiens chromosome 5 clone RP11-313I12, comp... 42 0.53
22gb|AC008926.8| Homo sapiens chromosome 5 clone CTD-2285N11, comp... 42 0.53
23emb|AJ437637.1|MSI437637 Miscanthus sinensis macronuclear TUA3 g... 42 0.53
24emb|AJ431265.1|MFL431265 Miscanthus floridulus TUA7 gene for alp... 42 0.53
25emb|AJ431264.1|MFL431264 Miscanthus floridulus TUA5 gene for alp... 42 0.53
26gb|AC163330.4| Mus musculus chromosome 5, clone RP23-167H23, com... 40 2.1
27emb|AL591644.14| Human DNA sequence from clone RP11-443B9 on chr... 40 2.1
28emb|AL445288.9| Human DNA sequence from clone RP11-95F22 on chro... 40 2.1
29emb|BX942837.5| Zebrafish DNA sequence from clone CH211-224B23 i... 40 2.1
30gb|AC129946.9| Mus musculus chromosome 5, clone RP24-512F21, com... 40 2.1
31emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in ... 40 2.1
32gb|L40609.1|PFAVAR23A Plasmodium falciparum (strain FCR3) varian... 40 2.1
33gb|AC135720.8| Mus musculus chromosome 15, clone RP24-298F20, co... 38 8.2
34ref|XM_717202.1| Candida albicans SC5314 hyphally regulated cell... 38 8.2
35ref|XM_717090.1| Candida albicans SC5314 hyphally regulated cell... 38 8.2
36gb|AC004972.2| Homo sapiens PAC clone RP5-1136A10 from 7, comple... 38 8.2
37emb|AL078634.24|HS1049G11 Human DNA sequence from clone RP5-1049... 38 8.2
38emb|AL110503.2|HSJ1100I6 Human DNA sequence from clone RP5-1100I... 38 8.2
39emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 38 8.2
40emb|AL713962.14| Mouse DNA sequence from clone RP23-3D5 on chrom... 38 8.2
41gb|AF216869.1| Triticum aestivum cultivar 7841 glutenin, high mo... 38 8.2
42gb|AC044782.6| Homo sapiens chromosome 10 clone RP11-170M17, com... 38 8.2
43gb|AC069543.5| Homo sapiens chromosome 10 clone RP11-393H5, comp... 38 8.2
44emb|BX511224.8| Zebrafish DNA sequence from clone CH211-113D14 i... 38 8.2
45gb|AC025767.6|AC025767 Homo sapiens chromosome 5 clone CTD-2087B... 38 8.2
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
47gb|AC145893.2| Pan troglodytes BAC clone RP43-8C18 from chromoso... 38 8.2
48emb|AJ314783.1|TAE314783 Triticum aestivum glu-1R gene for high ... 38 8.2
49emb|AJ314781.1|SCE314781 Secale cereale subsp. cereale glu-1R ge... 38 8.2
50emb|AJ314780.1|SCE314780 Secale cereale subsp. cereale glu-1R ge... 38 8.2
51emb|AJ314777.1|SCE314777 Secale cereale subsp. segetale glu-1R g... 38 8.2
52emb|AJ314775.1|SCE314775 Secale cereale subsp. dighoricum glu-1R... 38 8.2
53emb|AJ314774.1|SCE314774 Secale cereale subsp. ancestrale glu-1R... 38 8.2
54emb|BX569783.4| Zebrafish DNA sequence from clone CH211-245H14 i... 38 8.2
55emb|BX072559.10| Zebrafish DNA sequence from clone CH211-272F15 ... 38 8.2
56emb|BX510372.6| Zebrafish DNA sequence from clone CH211-243J20 i... 38 8.2
57emb|Z50123.2|CAHYR1GN Candida albicans HYR1 gene and promoter re... 38 8.2 
>emb|X99623.1|HVATUB1 H.vulgare mRNA for alpha-tubulin 1
          Length = 1617

 Score =  323 bits (163), Expect = 1e-85
 Identities = 163/163 (100%)
 Strand = Plus / Minus

                                                                        
Query: 3    caccctaacaacatcttcagtacattacaggaaaggaaacacgcataacagcaatcaata 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1571 caccctaacaacatcttcagtacattacaggaaaggaaacacgcataacagcaatcaata 1512

                                                                        
Query: 63   tgtaacgcaacggaaccaaattaccgagtatacagatcaaagccaatcattaaccagcca 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 tgtaacgcaacggaaccaaattaccgagtatacagatcaaagccaatcattaaccagcca 1452

                                                       
Query: 123  actaccttattaaccagctacttagtagtcatcgccctcgtcg 165
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 actaccttattaaccagctacttagtagtcatcgccctcgtcg 1409
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>ref|XM_507378.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1699_E05.40 mRNA
          Length = 1727

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1491 ccaatcattaaccagagaactac-ttattaaccagctact 1453
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>ref|XM_478815.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1628

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1512 ccaatcattaaccagagaactac-ttattaaccagctact 1474
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>ref|XM_506424.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1699_E05.40 mRNA
          Length = 1647

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1519 ccaatcattaaccagagaactac-ttattaaccagctact 1481
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>gb|BT018929.1| Zea mays clone Contig58.F mRNA sequence
          Length = 1663

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 129  ttattaaccagctacttagtagtcatcgccctcgtc 164
            ||||||||| |||||| | |||||||||||||||||
Sbjct: 1451 ttattaaccggctactcaatagtcatcgccctcgtc 1416
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>emb|Z11931.1|OSTUBA1M Oryza sativa mRNA for alpha 1 tubulin
          Length = 1726

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1483 ccaatcattaaccagagaactac-ttattaaccagctact 1445
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>emb|X91808.1|OSTA274 O.sativa mRNA for alpha-tubulin (clone OSTA-274)
          Length = 1685

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1499 ccaatcattaaccagagaactac-ttattaaccagctact 1461
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>emb|X63178.1|ZMALTUB6 Z.mays mRNA for alpha-tubulin 6
          Length = 1592

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 129  ttattaaccagctacttagtagtcatcgccctcgtc 164
            ||||||||| |||||| | |||||||||||||||||
Sbjct: 1400 ttattaaccggctactcaatagtcatcgccctcgtc 1365
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>emb|AJ420858.1|ZMA420858 Zea mays partial tua6 gene for alpha tubulin, exons 4-5
          Length = 2034

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 129  ttattaaccagctacttagtagtcatcgccctcgtc 164
            ||||||||| |||||| | |||||||||||||||||
Sbjct: 1302 ttattaaccggctactcaatagtcatcgccctcgtc 1267
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>emb|AJ420857.1|ZMA420857 Zea mays partial mRNA for alpha tubulin (tua6 gene)
          Length = 870

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 129 ttattaaccagctacttagtagtcatcgccctcgtc 164
           ||||||||| |||||| | |||||||||||||||||
Sbjct: 619 ttattaaccggctactcaatagtcatcgccctcgtc 584
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                        
Query: 105      ccaatcattaaccagccaactaccttattaaccagctact 144
                |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 23193400 ccaatcattaaccagagaactac-ttattaaccagctact 23193362
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>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1562_B11
          Length = 112144

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                     
Query: 105   ccaatcattaaccagccaactaccttattaaccagctact 144
             |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 56314 ccaatcattaaccagagaactac-ttattaaccagctact 56276
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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1699_E05
          Length = 170666

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                      
Query: 105    ccaatcattaaccagccaactaccttattaaccagctact 144
              |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 137584 ccaatcattaaccagagaactac-ttattaaccagctact 137546
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>dbj|AK104900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C09, full
            insert sequence
          Length = 1628

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1512 ccaatcattaaccagagaactac-ttattaaccagctact 1474
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>dbj|AK069140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006G21, full
            insert sequence
          Length = 1647

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1519 ccaatcattaaccagagaactac-ttattaaccagctact 1481
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>dbj|AK067721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N24, full
            insert sequence
          Length = 1726

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 37/40 (92%), Gaps = 1/40 (2%)
 Strand = Plus / Minus

                                                    
Query: 105  ccaatcattaaccagccaactaccttattaaccagctact 144
            |||||||||||||||  |||||| ||||||||||||||||
Sbjct: 1490 ccaatcattaaccagagaactac-ttattaaccagctact 1452
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>emb|AJ437640.1|MSI437640 Miscanthus transmorrisonensis macronuclear TUA3 gene for
            alpha-tubulin, variety transmorrisonensis
          Length = 3078

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 115  accagccaactaccttattaaccagctacttagtagtcatcgccctcgtc 164
            |||||| |||||| |||||||||||||||| | || ||||| ||||||||
Sbjct: 3069 accagcgaactac-ttattaaccagctactcaataatcatctccctcgtc 3021
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>emb|AJ431263.1|MSI431263 Miscanthus sinensis TUA2 gene for alpha-tubulin, exons 1-5
          Length = 3088

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 115  accagccaactaccttattaaccagctacttagtagtcatcgccctcgtc 164
            |||||| |||||| |||||||||||||||| | ||||| || ||||||||
Sbjct: 3079 accagcgaactac-ttattaaccagctactcaatagtcgtctccctcgtc 3031
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>emb|AJ431262.1|MSI431262 Miscanthus sinensis TUA1 gene for alpha-tubulin, exons 1-5
          Length = 3066

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Minus

                                                              
Query: 115  accagccaactaccttattaaccagctacttagtagtcatcgccctcgtc 164
            |||||| |||||| || ||||||||||||| | ||||| |||||||||||
Sbjct: 3057 accagcgaactac-ttcttaaccagctactcaatagtcgtcgccctcgtc 3009
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>gb|AF008122.1|AF008122 Eleusine indica alpha-tubulin 3 (TUA3) mRNA, complete cds
          Length = 1676

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 128  cttattaaccagctacttagtagtcatcgccctc 161
            ||||||||||||||||| ||||||| || |||||
Sbjct: 1460 cttattaaccagctactcagtagtcttctccctc 1427
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>gb|AC016635.8| Homo sapiens chromosome 5 clone RP11-313I12, complete sequence
          Length = 163536

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   attaaccagccaactacctta 131
             |||||||||||||||||||||
Sbjct: 74554 attaaccagccaactacctta 74574
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>gb|AC008926.8| Homo sapiens chromosome 5 clone CTD-2285N11, complete sequence
          Length = 104088

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   attaaccagccaactacctta 131
             |||||||||||||||||||||
Sbjct: 16622 attaaccagccaactacctta 16642
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>emb|AJ437637.1|MSI437637 Miscanthus sinensis macronuclear TUA3 gene for alpha-tubulin, variety
            glaber
          Length = 3090

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 128  cttattaaccagctacttagtagtcatcgccctcgtc 164
            ||||||||||||||||| | ||||| || ||||||||
Sbjct: 3069 cttattaaccagctactcaatagtcgtctccctcgtc 3033
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>emb|AJ431265.1|MFL431265 Miscanthus floridulus TUA7 gene for alpha-tubulin, exons 1-5
          Length = 3108

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 128  cttattaaccagctacttagtagtcatcgccctcgtc 164
            ||||||||||||||||| | || ||||| ||||||||
Sbjct: 3087 cttattaaccagctactcaataatcatctccctcgtc 3051
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>emb|AJ431264.1|MFL431264 Miscanthus floridulus TUA5 gene for alpha-tubulin polypeptide, exons
            1-5
          Length = 3099

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 128  cttattaaccagctacttagtagtcatcgccctcgtc 164
            ||||||||||||||||| | || ||||| ||||||||
Sbjct: 3078 cttattaaccagctactcaataatcatctccctcgtc 3042
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>gb|AC163330.4| Mus musculus chromosome 5, clone RP23-167H23, complete sequence
          Length = 207781

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     cattacaggaaaggaaacac 44
              ||||||||||||||||||||
Sbjct: 141819 cattacaggaaaggaaacac 141838
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>emb|AL591644.14| Human DNA sequence from clone RP11-443B9 on chromosome 9 Contains a
             laminin receptor 1 (67kD, ribosomal protein SA) (LAMR1)
             pseudogene, complete sequence
          Length = 97747

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    atcaaagccaatcattaacc 117
             ||||||||||||||||||||
Sbjct: 58249 atcaaagccaatcattaacc 58268
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>emb|AL445288.9| Human DNA sequence from clone RP11-95F22 on chromosome 13 Contains the
             5' end of the PCDH17 gene for protocadherin 17 (PCH68
             PCDH68) and two CpG islands, complete sequence
          Length = 94473

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    aacagcaatcaatatgtaac 68
             ||||||||||||||||||||
Sbjct: 87845 aacagcaatcaatatgtaac 87826
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>emb|BX942837.5| Zebrafish DNA sequence from clone CH211-224B23 in linkage group 5,
             complete sequence
          Length = 183605

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   actaccttattaaccagcta 142
             ||||||||||||||||||||
Sbjct: 17330 actaccttattaaccagcta 17349
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>gb|AC129946.9| Mus musculus chromosome 5, clone RP24-512F21, complete sequence
          Length = 141041

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     cattacaggaaaggaaacac 44
              ||||||||||||||||||||
Sbjct: 123987 cattacaggaaaggaaacac 123968
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>emb|BX000437.7| Zebrafish DNA sequence from clone DKEY-106O5 in linkage group 5,
            complete sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  actaccttattaaccagcta 142
            ||||||||||||||||||||
Sbjct: 2731 actaccttattaaccagcta 2712
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>gb|L40609.1|PFAVAR23A Plasmodium falciparum (strain FCR3) variant-specific surface protein
             (var-2, var-3) genes, complete cds's
          Length = 22243

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     taacaacatcttcagtacat 27
             ||||||||||||||||||||
Sbjct: 17302 taacaacatcttcagtacat 17283
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>gb|AC135720.8| Mus musculus chromosome 15, clone RP24-298F20, complete sequence
          Length = 156107

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    acattacaggaaaggaaac 42
             |||||||||||||||||||
Sbjct: 78158 acattacaggaaaggaaac 78140
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>ref|XM_717202.1| Candida albicans SC5314 hyphally regulated cell wall protein
            (CaO19_12440), mRNA
          Length = 2814

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   acaacatcttcagtacatt 28
            |||||||||||||||||||
Sbjct: 1523 acaacatcttcagtacatt 1505
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>ref|XM_717090.1| Candida albicans SC5314 hyphally regulated cell wall protein
            (CaO19_4975), mRNA
          Length = 2760

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   acaacatcttcagtacatt 28
            |||||||||||||||||||
Sbjct: 1523 acaacatcttcagtacatt 1505
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>gb|AC004972.2| Homo sapiens PAC clone RP5-1136A10 from 7, complete sequence
          Length = 140256

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    attacaggaaaggaaacac 44
             |||||||||||||||||||
Sbjct: 60420 attacaggaaaggaaacac 60402
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>emb|AL078634.24|HS1049G11 Human DNA sequence from clone RP5-1049G11 on chromosome 20p11.1-11.23
             Contains part of the KIAA1272 gene for a protein similar
             to rat tulip proteins 1 and 2, the 5' part of the gene for
             a novel protein similar to eukaryotic translation
             initiation factor 4E-like 4 and part of a novel protein
             similar to fly CG552, complete sequence
          Length = 136168

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   caactaccttattaaccag 139
             |||||||||||||||||||
Sbjct: 62029 caactaccttattaaccag 62047
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>emb|AL110503.2|HSJ1100I6 Human DNA sequence from clone RP5-1100I6 on chromosome 20 Contains a
              novel gene, a novel gene (FLJ33581) and a CpG island,
              complete sequence
          Length = 161525

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     ttacaggaaaggaaacacg 45
              |||||||||||||||||||
Sbjct: 136963 ttacaggaaaggaaacacg 136945
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>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
              complete sequence
          Length = 167269

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     tacattacaggaaaggaaa 41
              |||||||||||||||||||
Sbjct: 124919 tacattacaggaaaggaaa 124901
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>emb|AL713962.14| Mouse DNA sequence from clone RP23-3D5 on chromosome 11, complete
              sequence
          Length = 230198

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     tacattacaggaaaggaaa 41
              |||||||||||||||||||
Sbjct: 226235 tacattacaggaaaggaaa 226253
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>gb|AF216869.1| Triticum aestivum cultivar 7841 glutenin, high molecular weight
           subunit type y precursor (Glu-R1) gene, Glu-R1y allele,
           complete cds
          Length = 2331

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 tagtagtcatcgccctcgt 163
           |||||||||||||||||||
Sbjct: 168 tagtagtcatcgccctcgt 186
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>gb|AC044782.6| Homo sapiens chromosome 10 clone RP11-170M17, complete sequence
          Length = 149041

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    acattacaggaaaggaaac 42
             |||||||||||||||||||
Sbjct: 84522 acattacaggaaaggaaac 84540
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>gb|AC069543.5| Homo sapiens chromosome 10 clone RP11-393H5, complete sequence
          Length = 179789

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     acattacaggaaaggaaac 42
              |||||||||||||||||||
Sbjct: 122804 acattacaggaaaggaaac 122786
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>emb|BX511224.8| Zebrafish DNA sequence from clone CH211-113D14 in linkage group 2,
             complete sequence
          Length = 186709

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 129   ttattaaccagctacttagtagt 151
             |||||||||||||| ||||||||
Sbjct: 34062 ttattaaccagctaattagtagt 34084
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>gb|AC025767.6|AC025767 Homo sapiens chromosome 5 clone CTD-2087B2, complete sequence
          Length = 134545

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     ttacaggaaaggaaacacg 45
              |||||||||||||||||||
Sbjct: 111753 ttacaggaaaggaaacacg 111771
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 23       tacattacaggaaaggaaa 41
                |||||||||||||||||||
Sbjct: 27962066 tacattacaggaaaggaaa 27962048
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>gb|AC145893.2| Pan troglodytes BAC clone RP43-8C18 from chromosome 7, complete
             sequence
          Length = 161780

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 26    attacaggaaaggaaacac 44
             |||||||||||||||||||
Sbjct: 50428 attacaggaaaggaaacac 50446
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>emb|AJ314783.1|TAE314783 Triticum aestivum glu-1R gene for high molecular weight glutenin
           subunit y, clone pAHTas149-4
          Length = 2331

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 tagtagtcatcgccctcgt 163
           |||||||||||||||||||
Sbjct: 168 tagtagtcatcgccctcgt 186
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>emb|AJ314781.1|SCE314781 Secale cereale subsp. cereale glu-1R gene for high molecular weight
           glutenin subunit y, clone pAHScci10
          Length = 2331

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 tagtagtcatcgccctcgt 163
           |||||||||||||||||||
Sbjct: 168 tagtagtcatcgccctcgt 186
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>emb|AJ314780.1|SCE314780 Secale cereale subsp. cereale glu-1R gene for high molecular weight
           glutenin subunit y, clone pAHSccp3
          Length = 2331

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 tagtagtcatcgccctcgt 163
           |||||||||||||||||||
Sbjct: 168 tagtagtcatcgccctcgt 186
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>emb|AJ314777.1|SCE314777 Secale cereale subsp. segetale glu-1R gene for high molecular
           weight glutenin subunit y, clone pAHScs1
          Length = 2331

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 tagtagtcatcgccctcgt 163
           |||||||||||||||||||
Sbjct: 168 tagtagtcatcgccctcgt 186
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>emb|AJ314775.1|SCE314775 Secale cereale subsp. dighoricum glu-1R gene for high molecular
           weight glutenin subunit y, clone pAHScd1
          Length = 2331

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 tagtagtcatcgccctcgt 163
           |||||||||||||||||||
Sbjct: 168 tagtagtcatcgccctcgt 186
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>emb|AJ314774.1|SCE314774 Secale cereale subsp. ancestrale glu-1R gene for high molecular
           weight glutenin subunit y, clone pAHSca7
          Length = 2331

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 145 tagtagtcatcgccctcgt 163
           |||||||||||||||||||
Sbjct: 168 tagtagtcatcgccctcgt 186
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>emb|BX569783.4| Zebrafish DNA sequence from clone CH211-245H14 in linkage group 20,
              complete sequence
          Length = 200617

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 35     aaggaaacacgcataacag 53
              |||||||||||||||||||
Sbjct: 148951 aaggaaacacgcataacag 148933
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>emb|BX072559.10| Zebrafish DNA sequence from clone CH211-272F15 in linkage group 20,
             complete sequence
          Length = 156196

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 129   ttattaaccagctacttagtagt 151
             ||||||| |||||||||||||||
Sbjct: 40170 ttattaaacagctacttagtagt 40192
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>emb|BX510372.6| Zebrafish DNA sequence from clone CH211-243J20 in linkage group 20,
             complete sequence
          Length = 134837

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 35    aaggaaacacgcataacag 53
             |||||||||||||||||||
Sbjct: 39866 aaggaaacacgcataacag 39848
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>emb|Z50123.2|CAHYR1GN Candida albicans HYR1 gene and promoter region
          Length = 4764

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   acaacatcttcagtacatt 28
            |||||||||||||||||||
Sbjct: 3412 acaacatcttcagtacatt 3394


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,263,396
Number of Sequences: 3902068
Number of extensions: 1263396
Number of successful extensions: 74538
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 74402
Number of HSP's gapped (non-prelim): 136
length of query: 169
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 147
effective length of database: 17,147,199,772
effective search space: 2520638366484
effective search space used: 2520638366484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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