ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart12a05 |
|---|---|
| Clone Library Name | barley_pub |
>RAB7_VIGAC (Q41640) Ras-related protein Rab7| Length = 206 Score = 65.1 bits (157), Expect = 9e-11 Identities = 30/49 (61%), Positives = 34/49 (69%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+D NVD AFLCIAK AL +EH+QDIYF + E Q SGCAC Sbjct: 158 SAKEDFNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206
>RAB7_SOYBN (Q43463) Ras-related protein Rab7| Length = 206 Score = 65.1 bits (157), Expect = 9e-11 Identities = 30/49 (61%), Positives = 34/49 (69%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+D NVD AFLCIAK AL +EH+QDIYF + E Q SGCAC Sbjct: 158 SAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC 206
>RAB7_ARATH (O04157) Ras-related protein Rab7 (AtRab75)| Length = 203 Score = 57.0 bits (136), Expect = 2e-08 Identities = 30/49 (61%), Positives = 34/49 (69%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+D NVD +FLCI KLAL +E DQDIYF + G PE Q GCAC Sbjct: 158 SAKEDYNVDDSFLCITKLALANERDQDIYFQ--PDTGSVPE-QRGGCAC 203
>RAB7_PRUAR (O24461) Ras-related protein Rab7| Length = 207 Score = 43.1 bits (100), Expect = 4e-04 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYF-NSVAEQGPKPEGQTSGCAC 329 SAK+ NVD AF CIAK AL +E +++IY +++ G + ++SGC C Sbjct: 158 SAKEGFNVDDAFQCIAKNALNNEPEEEIYLPDTIDVAGGGRQQRSSGCEC 207
>RAB7_GOSHI (Q9XER8) Ras-related protein Rab7| Length = 207 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAE--QGPKPEGQTSGCAC 329 SAK+ NVD AF CIA+ AL++E +++IY + G +P+ +++GC C Sbjct: 158 SAKEGFNVDAAFECIARNALKNEPEEEIYLPETIDVASGGRPQ-RSTGCEC 207
>RAB7_MESCR (P93267) Ras-related protein Rab7A| Length = 207 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYF-NSVAEQGPKPEGQTSGCAC 329 SAKD NV+ AF CIAK A+++E +++ Y +++ G +S C C Sbjct: 158 SAKDGTNVEEAFQCIAKNAIQNEPEEETYLPDTIDMAGSTRPQSSSACEC 207
>RAB7_PEA (P31022) Ras-related protein Rab7| Length = 206 Score = 38.1 bits (87), Expect = 0.012 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+ NV+ AF IAK AL+ ++++Y + G + +++GC C Sbjct: 158 SAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSSQPRSTGCEC 206
>YPT71_SCHPO (Q9HDY0) GTP-binding protein ypt71| Length = 208 Score = 37.0 bits (84), Expect = 0.026 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQ--GPKPEGQTSGCAC 329 SAK++ NV F +++LALE+E +D + N +E KP TS C C Sbjct: 158 SAKENTNVTDLFETVSRLALENESSRDDFVNDFSEPLLLSKPLNNTSSCNC 208
>RAB7_PENCL (Q40787) Ras-related protein Rab7| Length = 206 Score = 36.2 bits (82), Expect = 0.044 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYF-NSVAEQGPKPEGQTSGC 335 SAK+ NV+ AF CI K AL++E ++++Y ++V G ++SGC Sbjct: 158 SAKEGTNVEDAFQCIVKNALKNEPEEELYVPDTVDVVGGNRAQRSSGC 205
>YPTV5_VOLCA (P36864) GTP-binding protein yptV5| Length = 205 Score = 36.2 bits (82), Expect = 0.044 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+D NV+ AF CI + AL +E +++++ + + G C Sbjct: 157 SAKEDINVEAAFTCITRNALRNEKEEELFVPDAVDMNTSATQRKRGGCC 205
>YPTC5_CHLRE (Q39573) GTP-binding protein YPTC5| Length = 206 Score = 34.7 bits (78), Expect = 0.13 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYF-NSVAEQGPKPEGQTSGC 335 SAK+D NV+ AF CI + AL +E +++++ ++V + + +GC Sbjct: 158 SAKEDINVEAAFTCITRNALRNEKEEELFMPDAVDMNTTATQRKRAGC 205
>YPT7_SCHPO (O94655) GTP-binding protein ypt7| Length = 205 Score = 32.0 bits (71), Expect = 0.83 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+ NV AF +AKLALE+ DI + E Q + C C Sbjct: 157 SAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLDMESQKTSCYC 205
>YR765_MIMIV (Q5UPQ3) Putative BTB/POZ domain-containing protein R765| Length = 473 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +3 Query: 153 LPS*GSIACNC*S-VTNYRMVHYIQERTQKQVIHRTYGATNVV 278 LP+ GS+ CNC V N +MV +I E +Q YG +N++ Sbjct: 180 LPTIGSL-CNCFCYVKNKKMVFFINELSQLVAFDIRYGTSNII 221
>YPT7_YEAST (P32939) GTP-binding protein YPT7| Length = 208 Score = 28.9 bits (63), Expect = 7.1 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEH-----EHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+ NVDTAF IA+ AL+ E +D Y +++ + +G+ + C+C Sbjct: 158 SAKNAINVDTAFEEIARSALQQNQADTEAFEDDYNDAI---NIRLDGENNSCSC 208
>BSC1_YEAST (Q12140) Bypass of stop codon protein 1| Length = 328 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 159 WAIKCKQFRQSHCCQTNSSSVVTCSISTA 73 W +CK C + +SSS+ T SI+T+ Sbjct: 145 WTYQCKGNNDGTCTKASSSSITTSSITTS 173
>CLC2_CAEEL (Q11085) Clc-like protein 2| Length = 252 Score = 28.5 bits (62), Expect = 9.2 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 7/56 (12%) Frame = -2 Query: 192 LINSCKLCSPSWAI----KCKQFRQSH---CCQTNSSSVVTCSISTA*SDCNRAYS 46 L+ + LC+P+W + + +Q+ QS CQT + + +C+ + + D N +S Sbjct: 18 LLTAAALCTPAWQVVYAREIRQWVQSGLWLSCQTRPNGMYSCTYTFSHDDFNTYFS 73
>RAB7_RAT (P09527) Ras-related protein Rab-7 (RAS-related protein P23)| (RAS-related protein BRL-RAS) Length = 207 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAE-----QGPKPEGQTSGCAC 329 SAK+ NV+ AF IA+ AL+ E + ++Y N E + + + C+C Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELY-NEFPEPIKLDKNERAKASAESCSC 207
>RAB7_MOUSE (P51150) Ras-related protein Rab-7| Length = 207 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAE-----QGPKPEGQTSGCAC 329 SAK+ NV+ AF IA+ AL+ E + ++Y N E + + + C+C Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELY-NEFPEPIKLDKNDRAKASAESCSC 207
>RAB7_HUMAN (P51149) Ras-related protein Rab-7| Length = 207 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAE-----QGPKPEGQTSGCAC 329 SAK+ NV+ AF IA+ AL+ E + ++Y N E + + + C+C Sbjct: 155 SAKEAINVEQAFQTIARNALKQETEVELY-NEFPEPIKLDKNDRAKASAESCSC 207
>RAB7_NEUCR (Q9C2L8) Probable Ras-related protein Rab7| Length = 205 Score = 28.5 bits (62), Expect = 9.2 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -1 Query: 475 SAKDDCNVDTAFLCIAKLALEHEHDQDIYFNSVAEQGPKPEGQTSGCAC 329 SAK+ NV+ AF IA+ AL E ++ + E GCAC Sbjct: 157 SAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINIHIENDRDGCAC 205 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,539,199 Number of Sequences: 219361 Number of extensions: 1101745 Number of successful extensions: 2384 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2384 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
