>gb|DQ154923.1| Hordeum vulgare RAB7 (RAB7) gene, exons 1 through 6 and partial
           cds; and delta-1-pyrroline-5-carboxylate dehydrogenase
           (P5CDH) gene, complete cds
          Length = 13878

 Score =  165 bits (83), Expect = 2e-37
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                       
Query: 393 atgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaagcagtgtcg 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 atgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaagcagtgtcg 174

                                  
Query: 453 acattgcagtcgtccttggccga 475
           |||||||||||||||||||||||
Sbjct: 175 acattgcagtcgtccttggccga 197

>ref|XM_475776.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 594

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 384 ttgaagtagatgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaa 443
           |||||||||||||| ||||| |||||||||||||  ||||||||||| |||||||| |||
Sbjct: 539 ttgaagtagatgtcctgatcatgctcatgctccagagcaagcttggcaatgcacagaaaa 480

                                  
Query: 444 gcagtgtcgacattgcagtcgtc 466
           ||| |||| |||||| |||||||
Sbjct: 479 gcactgtcaacattgtagtcgtc 457

>dbj|AK105140.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H02, full
           insert sequence
          Length = 840

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 384 ttgaagtagatgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaa 443
           |||||||||||||| ||||| |||||||||||||  ||||||||||| |||||||| |||
Sbjct: 586 ttgaagtagatgtcctgatcatgctcatgctccagagcaagcttggcaatgcacagaaaa 527

                                  
Query: 444 gcagtgtcgacattgcagtcgtc 466
           ||| |||| |||||| |||||||
Sbjct: 526 gcactgtcaacattgtagtcgtc 504

>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
              complete sequence
          Length = 147704

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                          
Query: 393    atgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaagcagtgtcg 452
              ||||| ||||| |||||||||||||  ||||||||||| |||||||| |||||| |||| 
Sbjct: 104087 atgtcctgatcatgctcatgctccagagcaagcttggcaatgcacagaaaagcactgtca 104028

                            
Query: 453    acattgcagtcgtc 466
              |||||| |||||||
Sbjct: 104027 acattgtagtcgtc 104014

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                            
Query: 393      atgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaagcagtgtcg 452
                ||||| ||||| |||||||||||||  ||||||||||| |||||||| |||||| |||| 
Sbjct: 26459396 atgtcctgatcatgctcatgctccagagcaagcttggcaatgcacagaaaagcactgtca 26459337

                              
Query: 453      acattgcagtcgtc 466
                |||||| |||||||
Sbjct: 26459336 acattgtagtcgtc 26459323

>ref|NM_191744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 597

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 386 gaagtagatgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaagc 445
           |||||||||||| |||||  |||||||||| || |||||||| ||||   ||| ||| ||
Sbjct: 537 gaagtagatgtcctgatcacgctcatgctctaaagcaagcttagcgacagacaagaacgc 478

                         
Query: 446 agtgtcgacattgc 459
           | ||||||||||||
Sbjct: 477 actgtcgacattgc 464

>dbj|AK111495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E15, full
           insert sequence
          Length = 994

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 386 gaagtagatgtcttgatcgtgctcatgctccaaggcaagcttggcgatgcacaggaaagc 445
           |||||||||||| |||||  |||||||||| || |||||||| ||||   ||| ||| ||
Sbjct: 684 gaagtagatgtcctgatcacgctcatgctctaaagcaagcttagcgacagacaagaacgc 625

                         
Query: 446 agtgtcgacattgc 459
           | ||||||||||||
Sbjct: 624 actgtcgacattgc 611

>emb|BX544877.19| Zebrafish DNA sequence from clone CH211-202C4 in linkage group 25,
              complete sequence
          Length = 144487

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 2      ggaaaaaaccagaatgcagtttattt 27
              ||||||| ||||||||||||||||||
Sbjct: 121936 ggaaaaacccagaatgcagtttattt 121911

>emb|CR450808.5| Zebrafish DNA sequence from clone DKEYP-55H4 in linkage group 25,
              complete sequence
          Length = 169887

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 2      ggaaaaaaccagaatgcagtttattt 27
              ||||||| ||||||||||||||||||
Sbjct: 156511 ggaaaaacccagaatgcagtttattt 156486

>emb|BX855604.5| Zebrafish DNA sequence from clone CH211-284P4, complete sequence
          Length = 152761

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 2     ggaaaaaaccagaatgcagtttattt 27
             ||||||| ||||||||||||||||||
Sbjct: 82128 ggaaaaacccagaatgcagtttattt 82103

>emb|BX294147.1| Pirellula sp. strain 1 complete genome; segment 15/24
          Length = 314450

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 361    tagggccttgttctgcaactg 381
              |||||||||||||||||||||
Sbjct: 249210 tagggccttgttctgcaactg 249190

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 407     ctcatgctccaaggcaagct 426
               ||||||||||||||||||||
Sbjct: 4139145 ctcatgctccaaggcaagct 4139164

>gb|AC163625.5| Mus musculus BAC clone RP23-135K11 from chromosome 8, complete sequence
          Length = 228750

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    attgaagtagatgtcttgat 402
              ||||||||||||||||||||
Sbjct: 182343 attgaagtagatgtcttgat 182324

>emb|BX901972.12| Zebrafish DNA sequence from clone DKEY-24H22 in linkage group 1,
             complete sequence
          Length = 212798

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   ggaactgtttacattttatt 154
             ||||||||||||||||||||
Sbjct: 50837 ggaactgtttacattttatt 50818

>gb|AY139182.1| Homo sapiens 18 kDa antrum mucosa protein (AMP18) gene, complete cds
          Length = 7995

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   agaatgcagtttatttattt 31
            ||||||||||||||||||||
Sbjct: 6390 agaatgcagtttatttattt 6371

>emb|AL390789.13| Human DNA sequence from clone RP11-572N15 on chromosome 6, complete
              sequence
          Length = 147434

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    attttattgcccagctaggg 166
              ||||||||||||||||||||
Sbjct: 111254 attttattgcccagctaggg 111235

>gb|AF243079.1| Helicobacter sp. cytolethal distending toxin subunit B (cdtB) gene,
           partial cds
          Length = 675

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 ggcgcgacaaatgtagtgcg 280
           ||||||||||||||||||||
Sbjct: 545 ggcgcgacaaatgtagtgcg 526

>emb|AL833013.1|HSM804324 Homo sapiens mRNA; cDNA DKFZp666N164 (from clone DKFZp666N164)
          Length = 2438

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   agaatgcagtttatttattt 31
            ||||||||||||||||||||
Sbjct: 1036 agaatgcagtttatttattt 1017

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 407     ctcatgctccaaggcaagct 426
               ||||||||||||||||||||
Sbjct: 4139254 ctcatgctccaaggcaagct 4139273

>gb|AC114802.5| Homo sapiens BAC clone RP11-790N8 from 2, complete sequence
          Length = 154814

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    agaatgcagtttatttattt 31
             ||||||||||||||||||||
Sbjct: 37987 agaatgcagtttatttattt 37968

>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0050H14, complete sequence
          Length = 142245

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   ctcatgctccaaggcaagct 426
             ||||||||||||||||||||
Sbjct: 39782 ctcatgctccaaggcaagct 39801

>emb|CR925787.5| Zebrafish DNA sequence from clone DKEYP-110H2 in linkage group 10,
             complete sequence
          Length = 89686

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ggaactgtttacattttatt 154
             ||||||||||||||||||||
Sbjct: 81366 ggaactgtttacattttatt 81385

>gb|AC132311.2| Mus musculus BAC clone RP24-297P22 from 8, complete sequence
          Length = 164783

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   attgaagtagatgtcttgat 402
             ||||||||||||||||||||
Sbjct: 57983 attgaagtagatgtcttgat 57964

>emb|AL845524.5| Mouse DNA sequence from clone RP23-248D22 on chromosome 2, complete
             sequence
          Length = 174188

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    aaatgctacatgttacaacc 100
             ||||||||||||||||||||
Sbjct: 48716 aaatgctacatgttacaacc 48697


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,146,386
Number of Sequences: 3902068
Number of extensions: 5146386
Number of successful extensions: 77210
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77097
Number of HSP's gapped (non-prelim): 113
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)