Clone Name | rbart12a03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 378 tcgccggaggtgagggcgtgccacatgccggggtagaggt 417 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 11978 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 12017
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 378 tcgccggaggtgagggcgtgccacatgccggggtagaggt 417 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 13593 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 13632
>dbj|AK060331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B05, full insert sequence Length = 1201 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 378 tcgccggaggtgagggcgtgccacatgccggggtagaggt 417 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 909 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 870
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 378 tcgccggaggtgagggcgtgccacatgccggggtagaggt 417 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 13593 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 13632
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 378 tcgccggaggtgagggcgtgccacatgccggggtagaggt 417 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 11978 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 12017
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147503 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 378 tcgccggaggtgagggcgtgccacatgccggggtagaggt 417 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 13593 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 13632
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131346 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 378 tcgccggaggtgagggcgtgccacatgccggggtagaggt 417 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 11978 tcgccggaggtgagggcgtgccacatgccggtgtagaggt 12017
>gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome 16, complete sequence Length = 148167 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 210 gcttttgtgctattttgtttgt 231 |||||||||||||||||||||| Sbjct: 82246 gcttttgtgctattttgtttgt 82225
>gb|AC155074.12| Mus musculus chromosome 15, clone RP24-127H11, complete sequence Length = 184795 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 cttggccttctgctccatctc 271 ||||||||||||||||||||| Sbjct: 19492 cttggccttctgctccatctc 19512
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ttagtacaataatgaattaat 122 ||||||||||||||||||||| Sbjct: 173573 ttagtacaataatgaattaat 173593
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ttagtacaataatgaattaat 122 ||||||||||||||||||||| Sbjct: 122600 ttagtacaataatgaattaat 122620
>dbj|AK071040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H22, full insert sequence Length = 2195 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 ttagtacaataatgaattaat 122 ||||||||||||||||||||| Sbjct: 1732 ttagtacaataatgaattaat 1752
>gb|AC153728.1| Mus musculus BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 226417 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 tcttgtcctggctcactgcc 443 |||||||||||||||||||| Sbjct: 56257 tcttgtcctggctcactgcc 56238
>ref|XM_633537.1| Dictyostelium discoideum hypothetical protein (DDB0186014), partial mRNA Length = 1644 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 caataatgaattaatacacc 127 |||||||||||||||||||| Sbjct: 90 caataatgaattaatacacc 71
>gb|AC123645.7| Mus musculus chromosome 15, clone RP23-99N19, complete sequence Length = 192973 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ctggtatacaagaagacaga 79 |||||||||||||||||||| Sbjct: 158831 ctggtatacaagaagacaga 158850
>gb|AE008598.1| Rickettsia conorii str. Malish 7, section 30 of 114 of the complete genome Length = 11461 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 aaccatgcctacagctgctc 199 |||||||||||||||||||| Sbjct: 1997 aaccatgcctacagctgctc 1978
>ref|XM_613558.2| PREDICTED: Bos taurus similar to splicing factor 4 isoform a (LOC533971), mRNA Length = 2047 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 tgcttggccttctgctccat 268 |||||||||||||||||||| Sbjct: 155 tgcttggccttctgctccat 136
>gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, complete sequence Length = 194221 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ttaaccatgcctacagctgc 197 |||||||||||||||||||| Sbjct: 151583 ttaaccatgcctacagctgc 151602
>gb|AC005062.1| Homo sapiens BAC clone CTB-95A14 from 7, complete sequence Length = 119927 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaatagcactgccatatgat 27 |||||||||||||||||||| Sbjct: 49521 aaatagcactgccatatgat 49540
>emb|AL357519.19| Human DNA sequence from clone RP11-367G18 on chromosome 6 Contains a putative novel gene and a ubiquitin/ ribosomal protein S27A (RPS27A) fusion protein pseudogene, complete sequence Length = 157021 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 7 gaaatagcactgccatatgatatatctt 34 ||||||||||| ||| |||||||||||| Sbjct: 100624 gaaatagcacttccacatgatatatctt 100597
>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence Length = 247394 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 tcttgtcctggctcactgcc 443 |||||||||||||||||||| Sbjct: 7184 tcttgtcctggctcactgcc 7165
>gb|AC079467.2|AC079467 Homo sapiens chromosome 5 clone RP11-357D18, complete sequence Length = 141591 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 tgagcttcttgtcctggctc 437 |||||||||||||||||||| Sbjct: 77156 tgagcttcttgtcctggctc 77175
>dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09A24, TM0003, complete sequence Length = 88828 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 ttgcatggtatactggtata 67 |||||||||||||||||||| Sbjct: 7004 ttgcatggtatactggtata 7023
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tggccttctgctccatctcc 272 |||||||||||||||||||| Sbjct: 2054861 tggccttctgctccatctcc 2054842
>emb|AL669929.14| Mouse DNA sequence from clone RP23-197J15 on chromosome X, complete sequence Length = 204206 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 aataatgaattaatacacca 128 |||||||||||||||||||| Sbjct: 143691 aataatgaattaatacacca 143710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,358,432 Number of Sequences: 3902068 Number of extensions: 4358432 Number of successful extensions: 81011 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80756 Number of HSP's gapped (non-prelim): 255 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)