ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart12a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein) 30 1.5
2PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) ... 30 1.5
3PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein) 30 1.5
4PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein) 30 1.5
5PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) ... 29 2.6
6PURL_SYNP7 (Q55041) Phosphoribosylformylglycinamidine synthase I... 29 3.4
7PURL_SYNP6 (Q5N1Y6) Phosphoribosylformylglycinamidine synthase I... 29 3.4
8PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC ... 27 9.9
9SYW_METMA (Q8PWV5) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 27 9.9
10G45IP_HUMAN (Q8TAE8) Growth arrest and DNA-damage-inducible prot... 27 9.9

>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DNPETYEEALKRFAKLLSDRKKLR 380



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>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber|
           protein)
          Length = 386

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)|
          Length = 386

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = -3

Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199
           D   T EEAL RFAK LS+ +KLR
Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380



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>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)|
          Length = 377

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -3

Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199
           D   T EEAL RFAK LS  +KLR
Sbjct: 348 DSPETYEEALKRFAKLLSNRKKLR 371



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>PURL_SYNP7 (Q55041) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 777

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 202 QLALLGEPLGEADERLFIGASTVDGLIHPIVNGYP 306
           +L LLG P   AD+RL +G S    + H  V G P
Sbjct: 600 RLYLLGLPTQAADDRLSLGGSEYLAIAHQTVAGLP 634



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>PURL_SYNP6 (Q5N1Y6) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 777

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 202 QLALLGEPLGEADERLFIGASTVDGLIHPIVNGYP 306
           +L LLG P   AD+RL +G S    + H  V G P
Sbjct: 600 RLYLLGLPTQAADDRLSLGGSEYLAIAHQTVAGLP 634



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>PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC 2.6.1.-)|
          Length = 359

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 200 AKPTSTPSREEKRDEEALPTMLRDATRCV 114
           A P   P REE  D EAL   + D TR V
Sbjct: 128 ATPIHVPLREETHDLEALAAAVTDRTRMV 156



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>SYW_METMA (Q8PWV5) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)|
           (Tryptophan--tRNA ligase) (TrpRS)
          Length = 491

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 306 RVTIDNGMYETVDGAGTNEEALVRFAKRLSEERKLRQTNLN 184
           R T + G Y +V G G   EAL    KR+  + KL + +++
Sbjct: 236 RETAEGGKYLSVRGKGAPREALQELKKRIPGKVKLYEEHID 276



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>G45IP_HUMAN (Q8TAE8) Growth arrest and DNA-damage-inducible|
           proteins-interacting protein 1 (CR6-interacting factor
           1) (CRIF1) (CKII beta-associating protein)
           (Papillomavirus L2-interacting nuclear protein 1)
           (PLINP-1)
          Length = 222

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 229 QEALRGAQVAPNQPQLQVEKRRETKKHYLQCLGMQP 122
           QE+LR  Q+A  Q      KRRE ++H  +C+   P
Sbjct: 100 QESLRVKQLAEEQ------KRREREQHIAECMAKMP 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,788,580
Number of Sequences: 219361
Number of extensions: 648953
Number of successful extensions: 1752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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