ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549950.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
2dbj|AK109436.2| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
3dbj|AK104753.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
4dbj|AK067022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
7dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
8emb|AL358334.3|CNS05TE5 Human chromosome 14 DNA sequence BAC R-2... 44 0.42
9gb|AC121933.3| Mus musculus BAC clone RP24-206I11 from chromosom... 42 1.6
10gb|AC138200.10| Mus musculus chromosome 3, clone RP23-438J19, co... 42 1.6
11emb|CR762268.2| Xenopus tropicalis finished cDNA, clone TGas123h09 42 1.6
12gb|AC146849.1| Pan troglodytes BAC clone RP43-163I11 from 7, com... 40 6.5
13ref|XM_506048.1| Yarrowia lipolytica CLIB122, YALI0F30393g predi... 40 6.5
14emb|CR847567.6| Zebrafish DNA sequence from clone CH211-233B17 i... 40 6.5
15gb|DQ378290.1| Drosophila virilis strain Tucson 15010-1001.10 fo... 40 6.5
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
18gb|AC158541.1| Pan troglodytes BAC clone CH251-19F24 from chromo... 40 6.5
19gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, comp... 40 6.5
20dbj|AP006449.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
21dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
22dbj|AB161975.2| Bacteriophage WOcauB1 genomic DNA, partial sequence 40 6.5
23dbj|AP005268.1| Pan troglodytes DNA, chromosome 7 clone:PTB-029M... 40 6.5
24emb|CR790375.9| Zebrafish DNA sequence from clone CH211-251O16 i... 40 6.5
25emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 i... 40 6.5
26emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 6.5 
>ref|XM_549950.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1180

 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                       
Query: 332 ctgtaggagactttggtcacgcctttcttgactcttatatttgtaacctttaggttgccg 391
           ||||||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||  |
Sbjct: 872 ctgtaggagactttggtgaggcctttcttgactcttatgtttgtgacctttatgttgttg 813

                                                                       
Query: 392 atgtccgtgatgtcagctacatgagtgcctccacaaggacaaccaggacagtcaccaaat 451
           |||   | ||| || || ||||| || || |||||||| | ||||||| | |||||||||
Sbjct: 812 atgatagagatatcggcaacatgtgtaccaccacaagggccaccaggataatcaccaaat 753

                                  
Query: 452 ttcacaatgcggggagtgctatc 474
           ||||||||||| || ||||||||
Sbjct: 752 ttcacaatgcgaggggtgctatc 730
to top
>dbj|AK109436.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G11, full
           insert sequence
          Length = 1183

 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                       
Query: 332 ctgtaggagactttggtcacgcctttcttgactcttatatttgtaacctttaggttgccg 391
           ||||||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||  |
Sbjct: 836 ctgtaggagactttggtgaggcctttcttgactcttatgtttgtgacctttatgttgttg 777

                                                                       
Query: 392 atgtccgtgatgtcagctacatgagtgcctccacaaggacaaccaggacagtcaccaaat 451
           |||   | ||| || || ||||| || || |||||||| | ||||||| | |||||||||
Sbjct: 776 atgatagagatatcggcaacatgtgtaccaccacaagggccaccaggataatcaccaaat 717

                                  
Query: 452 ttcacaatgcggggagtgctatc 474
           ||||||||||| || ||||||||
Sbjct: 716 ttcacaatgcgaggggtgctatc 694
to top
>dbj|AK104753.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F08, full
           insert sequence
          Length = 1183

 Score =  101 bits (51), Expect = 2e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                       
Query: 332 ctgtaggagactttggtcacgcctttcttgactcttatatttgtaacctttaggttgccg 391
           ||||||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||  |
Sbjct: 836 ctgtaggagactttggtgaggcctttcttgactcttatgtttgtgacctttatgttgttg 777

                                                                       
Query: 392 atgtccgtgatgtcagctacatgagtgcctccacaaggacaaccaggacagtcaccaaat 451
           |||   | ||| || || ||||| || || |||||||| | ||||||| | |||||||||
Sbjct: 776 atgatagagatatcggcaacatgtgtaccaccacaagggccaccaggataatcaccaaat 717

                                  
Query: 452 ttcacaatgcggggagtgctatc 474
           ||||||||||| || ||||||||
Sbjct: 716 ttcacaatgcgaggggtgctatc 694
to top
>dbj|AK067022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090K12, full
           insert sequence
          Length = 1179

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 119/143 (83%)
 Strand = Plus / Minus

                                                                       
Query: 332 ctgtaggagactttggtcacgcctttcttgactcttatatttgtaacctttaggttgccg 391
           ||||||||||||||||| | |||||||||||||||||| ||||| ||||||| ||||  |
Sbjct: 871 ctgtaggagactttggtgaggcctttcttgactcttatgtttgtgacctttatgttgttg 812

                                                                       
Query: 392 atgtccgtgatgtcagctacatgagtgcctccacaaggacaaccaggacagtcaccaaat 451
           |||   | ||| || || ||||| || || |||||||| | ||||||| |  ||||||||
Sbjct: 811 atgatagagatatcggcaacatgtgtaccaccacaagggccaccaggataaacaccaaat 752

                                  
Query: 452 ttcacaatgcggggagtgctatc 474
           ||||||||||| || ||||||||
Sbjct: 751 ttcacaatgcgaggggtgctatc 729
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                
Query: 332     ctgtaggagactttggtcacgcctttcttgactcttatatttgtaacct 380
               ||||||||||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 1154639 ctgtaggagactttggtgaggcctttcttgactcttatgtttgtgacct 1154687



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                      
Query: 422     ccacaaggacaaccaggacagtcaccaaatttcacaatgcggggagtgctatcct 476
               |||||||| | ||||||| | |||||||||||||||||||| || ||||||||||
Sbjct: 1155143 ccacaagggccaccaggataatcaccaaatttcacaatgcgaggggtgctatcct 1155197
to top
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A04
          Length = 141079

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                               
Query: 332    ctgtaggagactttggtcacgcctttcttgactcttatatttgtaacct 380
              ||||||||||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 123953 ctgtaggagactttggtgaggcctttcttgactcttatgtttgtgacct 124001



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                     
Query: 422    ccacaaggacaaccaggacagtcaccaaatttcacaatgcggggagtgctatcct 476
              |||||||| | ||||||| | |||||||||||||||||||| || ||||||||||
Sbjct: 124457 ccacaagggccaccaggataatcaccaaatttcacaatgcgaggggtgctatcct 124511
to top
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0684C01
          Length = 78600

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                             
Query: 332  ctgtaggagactttggtcacgcctttcttgactcttatatttgtaacct 380
            ||||||||||||||||| | |||||||||||||||||| ||||| ||||
Sbjct: 8942 ctgtaggagactttggtgaggcctttcttgactcttatgtttgtgacct 8990



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                   
Query: 422  ccacaaggacaaccaggacagtcaccaaatttcacaatgcggggagtgctatcct 476
            |||||||| | ||||||| | |||||||||||||||||||| || ||||||||||
Sbjct: 9446 ccacaagggccaccaggataatcaccaaatttcacaatgcgaggggtgctatcct 9500
to top
>emb|AL358334.3|CNS05TE5 Human chromosome 14 DNA sequence BAC R-218E20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174793

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 142   gctaccttttcaaatattctac 163
             ||||||||||||||||||||||
Sbjct: 39307 gctaccttttcaaatattctac 39328
to top
>gb|AC121933.3| Mus musculus BAC clone RP24-206I11 from chromosome 8, complete sequence
          Length = 182816

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 5     ttcatcatttcacacatacaa 25
             |||||||||||||||||||||
Sbjct: 28623 ttcatcatttcacacatacaa 28643
to top
>gb|AC138200.10| Mus musculus chromosome 3, clone RP23-438J19, complete sequence
          Length = 183803

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   tgtggaagatgcacagaaaaa 318
             |||||||||||||||||||||
Sbjct: 86853 tgtggaagatgcacagaaaaa 86873
to top
>emb|CR762268.2| Xenopus tropicalis finished cDNA, clone TGas123h09
          Length = 1415

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 440 cagtcaccaaatttcacaatg 460
           |||||||||||||||||||||
Sbjct: 358 cagtcaccaaatttcacaatg 378
to top
>gb|AC146849.1| Pan troglodytes BAC clone RP43-163I11 from 7, complete sequence
          Length = 147837

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tttcacacatacaaaatcat 31
             ||||||||||||||||||||
Sbjct: 44097 tttcacacatacaaaatcat 44078
to top
>ref|XM_506048.1| Yarrowia lipolytica CLIB122, YALI0F30393g predicted mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 71  gatctgcaaatccacctttc 90
           ||||||||||||||||||||
Sbjct: 783 gatctgcaaatccacctttc 764
to top
>emb|CR847567.6| Zebrafish DNA sequence from clone CH211-233B17 in linkage group 5,
             complete sequence
          Length = 126967

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   tcttatatttgtaaccttta 383
             ||||||||||||||||||||
Sbjct: 93579 tcttatatttgtaaccttta 93560
to top
>gb|DQ378290.1| Drosophila virilis strain Tucson 15010-1001.10 fosmid 10J19, complete
             sequence
          Length = 34783

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ggaagatgcacagaaaaatt 320
             ||||||||||||||||||||
Sbjct: 16918 ggaagatgcacagaaaaatt 16937
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      tttcattcctcctcgtatat 284
                ||||||||||||||||||||
Sbjct: 27269876 tttcattcctcctcgtatat 27269857
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 265     tttcattcctcctcgtatat 284
               ||||||||||||||||||||
Sbjct: 6604991 tttcattcctcctcgtatat 6605010
to top
>gb|AC158541.1| Pan troglodytes BAC clone CH251-19F24 from chromosome unknown, complete
              sequence
          Length = 186577

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     tttcacacatacaaaatcat 31
              ||||||||||||||||||||
Sbjct: 152023 tttcacacatacaaaatcat 152042
to top
>gb|AC103779.5| Homo sapiens chromosome 8, clone RP11-466B9, complete sequence
          Length = 115682

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    tacaaaatcatacaagagtt 40
             ||||||||||||||||||||
Sbjct: 79990 tacaaaatcatacaagagtt 80009
to top
>dbj|AP006449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1106B03
          Length = 155540

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   tttcattcctcctcgtatat 284
             ||||||||||||||||||||
Sbjct: 16099 tttcattcctcctcgtatat 16118
to top
>dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1151D08
          Length = 152824

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    tttcattcctcctcgtatat 284
              ||||||||||||||||||||
Sbjct: 103661 tttcattcctcctcgtatat 103680
to top
>dbj|AB161975.2| Bacteriophage WOcauB1 genomic DNA, partial sequence
          Length = 20484

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 201   tcatacaaaactgaatttatgaga 224
             |||||| |||||||||||||||||
Sbjct: 12109 tcatacgaaactgaatttatgaga 12132
to top
>dbj|AP005268.1| Pan troglodytes DNA, chromosome 7 clone:PTB-029M21, complete sequence
          Length = 154715

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tttcacacatacaaaatcat 31
             ||||||||||||||||||||
Sbjct: 64834 tttcacacatacaaaatcat 64853
to top
>emb|CR790375.9| Zebrafish DNA sequence from clone CH211-251O16 in linkage group 4,
             complete sequence
          Length = 153499

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   ttatgatttcattcctcctc 278
             ||||||||||||||||||||
Sbjct: 21611 ttatgatttcattcctcctc 21592
to top
>emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 in linkage group 7,
              complete sequence
          Length = 223489

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    ttttgtccccgagaaatcca 194
              ||||||||||||||||||||
Sbjct: 157842 ttttgtccccgagaaatcca 157861
to top
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      gatctgcaaatccacctttc 90
               ||||||||||||||||||||
Sbjct: 3797809 gatctgcaaatccacctttc 3797790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,498,531
Number of Sequences: 3902068
Number of extensions: 4498531
Number of successful extensions: 87440
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87328
Number of HSP's gapped (non-prelim): 108
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top