ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O1002_MOUSE (Q8VFK2) Olfactory receptor 1002 (Olfactory receptor... 30 2.9
2SPA4L_MOUSE (Q9DA32) Sperm-associated antigen 4-like protein 29 5.0

>O1002_MOUSE (Q8VFK2) Olfactory receptor 1002 (Olfactory receptor 175-2)|
          Length = 318

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
 Frame = -3

Query: 232 RYLSIIKPILY-----MRACVVHVVRAR-----TTLLRDESIMYE*YCMVQLLNLF---L 92
           RY++I KP+LY      R CV  V+        +T++   S     YC   L+N F   L
Sbjct: 122 RYVAICKPLLYTLIMSQRVCVQLVIGPYSIGLISTVVHTTSAFILPYCGPNLINHFFCDL 181

Query: 91  LCIFMMYMHDMHMNKYV 41
           L +  +   D  MNK++
Sbjct: 182 LPVLSLACADTQMNKHL 198



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>SPA4L_MOUSE (Q9DA32) Sperm-associated antigen 4-like protein|
          Length = 348

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 118 MVQLLNLFLLCIFMMYMHDMHMNKYVSVW 32
           +++ + L +LC+F  +M  MH+   V VW
Sbjct: 74  VMEKMGLLVLCVFGFWMFSMHLPSKVEVW 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,855,231
Number of Sequences: 219361
Number of extensions: 916969
Number of successful extensions: 1987
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1987
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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