Clone Name | rbart11h11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_479034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 776 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 260 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 310 ||||||||||||||| ||||| || || |||||| |||||||||| ||||| Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 466
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 260 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 310 ||||||||||||||| ||||| || || |||||| |||||||||| ||||| Sbjct: 24424060 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 24424110 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 257 cgatcatggcttggcctctggctc 280 |||||||||||||||||||||||| Sbjct: 24434446 cgatcatggcttggcctctggctc 24434469 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/78 (82%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 341 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 400 |||||| ||||| | ||| |||||||||||||| |||| |||| | |||||||| ||| Sbjct: 24416988 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 24417044 Query: 401 tggcacctcggggtgcgg 418 ||||| |||||||||| Sbjct: 24417045 cggcacgacggggtgcgg 24417062
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 260 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 310 ||||||||||||||| ||||| || || |||||| |||||||||| ||||| Sbjct: 49927 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 49977 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 257 cgatcatggcttggcctctggctc 280 |||||||||||||||||||||||| Sbjct: 60313 cgatcatggcttggcctctggctc 60336 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/78 (82%), Gaps = 3/78 (3%) Strand = Plus / Plus Query: 341 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 400 |||||| ||||| | ||| |||||||||||||| |||| |||| | |||||||| ||| Sbjct: 42855 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 42911 Query: 401 tggcacctcggggtgcgg 418 ||||| |||||||||| Sbjct: 42912 cggcacgacggggtgcgg 42929
>ref|XM_506449.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.120 mRNA Length = 629 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 257 cgatcatggcttggcctctggctc 280 |||||||||||||||||||||||| Sbjct: 424 cgatcatggcttggcctctggctc 401
>ref|XM_479039.1| Oryza sativa (japonica cultivar-group), mRNA Length = 629 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 257 cgatcatggcttggcctctggctc 280 |||||||||||||||||||||||| Sbjct: 424 cgatcatggcttggcctctggctc 401
>dbj|AK105814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C08, full insert sequence Length = 629 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 257 cgatcatggcttggcctctggctc 280 |||||||||||||||||||||||| Sbjct: 424 cgatcatggcttggcctctggctc 401
>dbj|AK062681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H05, full insert sequence Length = 629 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 257 cgatcatggcttggcctctggctc 280 |||||||||||||||||||||||| Sbjct: 424 cgatcatggcttggcctctggctc 401
>dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040D08, full insert sequence Length = 776 Score = 46.1 bits (23), Expect = 0.10 Identities = 44/51 (86%) Strand = Plus / Minus Query: 260 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 310 ||||||||||||||| ||||| || || |||||| | |||||||| ||||| Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactctggcttcggcggcaa 466
>ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antigen 3 (LOC515399), partial mRNA Length = 3164 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 acagattgagcagctgcacca 117 ||||||||||||||||||||| Sbjct: 1719 acagattgagcagctgcacca 1739
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aaaggaacagattgagcagct 111 ||||||||||||||||||||| Sbjct: 4032147 aaaggaacagattgagcagct 4032127
>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence Length = 209671 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 catgaatatacataaaaggaa 97 ||||||||||||||||||||| Sbjct: 128297 catgaatatacataaaaggaa 128277
>emb|CR550304.13| Zebrafish DNA sequence from clone CH211-150I13 in linkage group 13, complete sequence Length = 118999 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 acacaactgcaacataaaaat 30 ||||||||||||||||||||| Sbjct: 38599 acacaactgcaacataaaaat 38579
>emb|BX890597.13| Zebrafish DNA sequence from clone DKEY-65F8, complete sequence Length = 244779 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 acacaactgcaacataaaaat 30 ||||||||||||||||||||| Sbjct: 231438 acacaactgcaacataaaaat 231458
>ref|XM_694433.1| PREDICTED: Danio rerio similar to P100/P52 transcription factor (LOC570902), mRNA Length = 2790 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 acacaactgcaacataaaaat 30 ||||||||||||||||||||| Sbjct: 2752 acacaactgcaacataaaaat 2732
>gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome 16, complete sequence Length = 200016 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 atgcatatacatcatgaatat 85 ||||||||||||||||||||| Sbjct: 104456 atgcatatacatcatgaatat 104436
>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete sequence Length = 201738 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 83 tatacataaaaggaacagattgagc 107 |||| |||||||||||||||||||| Sbjct: 103112 tatatataaaaggaacagattgagc 103136
>gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 170723 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 atatcatgcatatacatcatg 80 ||||||||||||||||||||| Sbjct: 135297 atatcatgcatatacatcatg 135277
>gb|AY328083.1| Hypocrea jecorina serine/threonine kinase IREI mRNA, complete cds Length = 4494 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tcggcacctctggcacctcg 410 |||||||||||||||||||| Sbjct: 1124 tcggcacctctggcacctcg 1143
>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112 mRNA Length = 1006 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/78 (82%), Gaps = 3/78 (3%) Strand = Plus / Minus Query: 341 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 400 |||||| ||||| | ||| |||||||||||||| |||| |||| | |||||||| ||| Sbjct: 548 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 492 Query: 401 tggcacctcggggtgcgg 418 ||||| |||||||||| Sbjct: 491 cggcacgacggggtgcgg 474
>ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1005 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/78 (82%), Gaps = 3/78 (3%) Strand = Plus / Minus Query: 341 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 400 |||||| ||||| | ||| |||||||||||||| |||| |||| | |||||||| ||| Sbjct: 545 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 489 Query: 401 tggcacctcggggtgcgg 418 ||||| |||||||||| Sbjct: 488 cggcacgacggggtgcgg 471
>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15, complete sequence Length = 126156 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 gcacatggggctcctttggcacct 441 ||||||||| |||||||||||||| Sbjct: 103433 gcacatgggcctcctttggcacct 103456
>gb|AC159980.10| Mus musculus chromosome 3, clone RP24-171D20, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaatacaaacacaactgcaa 21 |||||||||||||||||||| Sbjct: 93084 aaatacaaacacaactgcaa 93065
>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence Length = 134538 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tgcatatcatgcatatacat 76 |||||||||||||||||||| Sbjct: 13943 tgcatatcatgcatatacat 13924
>emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chromosome 1 Contains the 3' end of the NPHP4 gene for nephronophthisis 4, complete sequence Length = 72610 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 atgtgcatatcatgcatata 73 |||||||||||||||||||| Sbjct: 57118 atgtgcatatcatgcatata 57099
>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C03, complete sequence Length = 157178 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 gcacatggggctcctttggcacct 441 ||||||||| |||||||||||||| Sbjct: 37277 gcacatgggcctcctttggcacct 37300
>gb|AF435023.1| Aedes aegypti ETS transcription factor E74A (E74A) mRNA, complete cds Length = 5139 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaatacaaacacaactgcaa 21 |||||||||||||||||||| Sbjct: 4492 aaatacaaacacaactgcaa 4511
>gb|AF435022.1| Aedes aegypti ETS transcription factor E74B (E74B) mRNA, complete cds Length = 5468 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaatacaaacacaactgcaa 21 |||||||||||||||||||| Sbjct: 4821 aaatacaaacacaactgcaa 4840
>gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, complete sequence Length = 149059 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ctcctttggcacctctggca 447 |||||||||||||||||||| Sbjct: 98369 ctcctttggcacctctggca 98388
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 gcacatggggctcctttggcacct 441 ||||||||| |||||||||||||| Sbjct: 6253999 gcacatgggcctcctttggcacct 6254022
>dbj|AB017062.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21I16 Length = 30578 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 aaacagaaacatacttattcatgt 57 |||||||||||||||| ||||||| Sbjct: 701 aaacagaaacatactttttcatgt 724
>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full insert sequence Length = 1005 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/78 (82%), Gaps = 3/78 (3%) Strand = Plus / Minus Query: 341 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 400 |||||| ||||| | ||| |||||||||||||| |||| |||| | |||||||| ||| Sbjct: 545 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 489 Query: 401 tggcacctcggggtgcgg 418 ||||| |||||||||| Sbjct: 488 cggcacgacggggtgcgg 471
>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full insert sequence Length = 1006 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/78 (82%), Gaps = 3/78 (3%) Strand = Plus / Minus Query: 341 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 400 |||||| ||||| | ||| |||||||||||||| |||| |||| | |||||||| ||| Sbjct: 548 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 492 Query: 401 tggcacctcggggtgcgg 418 ||||| |||||||||| Sbjct: 491 cggcacgacggggtgcgg 474
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 gcacatggggctcctttggcacct 441 ||||||||| |||||||||||||| Sbjct: 6320466 gcacatgggcctcctttggcacct 6320489
>emb|AL954380.9| Mouse DNA sequence from clone RP23-156O9 on chromosome 2, complete sequence Length = 105996 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 aaacacaactgcaacataaaaatt 31 |||||||||| ||||||||||||| Sbjct: 52698 aaacacaactccaacataaaaatt 52675
>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence Length = 215819 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atgaatatacataaaaggaa 97 |||||||||||||||||||| Sbjct: 63341 atgaatatacataaaaggaa 63322
>emb|AL683891.11| Mouse DNA sequence from clone RP23-435E7 on chromosome 3, complete sequence Length = 162394 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaatacaaacacaactgcaa 21 |||||||||||||||||||| Sbjct: 130135 aaatacaaacacaactgcaa 130116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,845,773 Number of Sequences: 3902068 Number of extensions: 3845773 Number of successful extensions: 78276 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 78146 Number of HSP's gapped (non-prelim): 134 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)