>U315_ARATH (Q8LFJ5) UPF0315 protein At1g22270|
          Length = 124

 Score = 79.7 bits (195), Expect = 3e-15
 Identities = 38/91 (41%), Positives = 53/91 (58%)
 Frame = -2

Query: 466 LRGILPKIDWRALFAATSAAGXXXXXXXXXXXXXXXXXEGAADVEGSAIRRLHHALLEIH 287
           +R +  KI+W+AL     + G                       +   +++LHHALLE+H
Sbjct: 41  IRHMFAKIEWKALVEGARSMGYAELPEESPDAAVLKS-------DEPFLKKLHHALLELH 93

Query: 286 VEEGTLVCPDSGRSFPILKGVPNMLLHEDEV 194
           +EEG LVCP++GR FP+ KG+PNMLLHEDEV
Sbjct: 94  LEEGALVCPETGRKFPVNKGIPNMLLHEDEV 124

>U316_ARATH (Q9C9R3) UPF0315 protein At1g78190|
          Length = 124

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 38/91 (41%), Positives = 53/91 (58%)
 Frame = -2

Query: 466 LRGILPKIDWRALFAATSAAGXXXXXXXXXXXXXXXXXEGAADVEGSAIRRLHHALLEIH 287
           LR +  KIDW+AL     +                       + + + +R+ HHALLE+H
Sbjct: 41  LRYMFAKIDWKALVDGARSMEYTELPDNAPDTTTL-------ESDETFLRKFHHALLELH 93

Query: 286 VEEGTLVCPDSGRSFPILKGVPNMLLHEDEV 194
           +EEG+LVCP++GR F + KG+PNMLLHEDEV
Sbjct: 94  LEEGSLVCPETGRKFSVSKGIPNMLLHEDEV 124

>U315_DROME (Q9VP65) UPF0315 protein CG12975|
          Length = 124

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = -2

Query: 457 ILPKIDWRALFAATSAAGXXXXXXXXXXXXXXXXXEGAADVEGS-AIRRLHHALLEIHVE 281
           ILPK+DW A++ A   A                       VE    +++LHH L EI V 
Sbjct: 45  ILPKLDWSAVYGAAQVAELTEDIPAVQPENI---------VENELLLQKLHHLLFEIDVL 95

Query: 280 EGTLVCPDSGRSFPILKGVPNMLLHEDEV 194
           EG L CP++GR FPI  G+PNMLL+EDEV
Sbjct: 96  EGQLECPETGRVFPISDGIPNMLLNEDEV 124

>U315_MOUSE (Q9DCG9) UPF0315 protein|
          Length = 125

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 32/87 (36%), Positives = 49/87 (56%)
 Frame = -2

Query: 457 ILPKIDWRALFAATSAAGXXXXXXXXXXXXXXXXXEGAADVEGSAIRRLHHALLEIHVEE 278
           ++PK++W AL  A                          + + + +R++HH LLE+ V E
Sbjct: 45  MIPKVEWAALVQAADTLNLAEVPKEPTEGY---------EHDETFLRKMHHVLLEVDVLE 95

Query: 277 GTLVCPDSGRSFPILKGVPNMLLHEDE 197
           GTL CP+SGR FPI +G+PNMLL+++E
Sbjct: 96  GTLQCPESGRLFPISRGIPNMLLNDEE 122

>U315_HUMAN (Q9UI30) UPF0315 protein AD-001|
          Length = 125

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = -2

Query: 322 IRRLHHALLEIHVEEGTLVCPDSGRSFPILKGVPNMLLHEDE 197
           +R +HH LLE+ V EGTL CP+SGR FPI +G+PNMLL E+E
Sbjct: 81  LRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSEEE 122

>YA42_SCHPO (Q09723) Hypothetical UPF0315 protein C31A2.02 in chromosome I|
          Length = 126

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 32/91 (35%), Positives = 45/91 (49%)
 Frame = -2

Query: 466 LRGILPKIDWRALFAATSAAGXXXXXXXXXXXXXXXXXEGAADVEGSAIRRLHHALLEIH 287
           L GI+P+IDW AL   T   G                     D +   ++ LH+ LLE  
Sbjct: 44  LIGIMPRIDWNALLKTTRQLGNYSLPDEKPDLVD--------DSDEVLLKSLHNVLLETE 95

Query: 286 VEEGTLVCPDSGRSFPILKGVPNMLLHEDEV 194
           + EG +VC + G  +PI +G+PNMLL E E+
Sbjct: 96  ITEGKMVCGNCGHVYPIFEGIPNMLLSESEI 126

>U315_CAEEL (O45241) Hypothetical UPF0315 protein C04H5.1|
          Length = 125

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = -2

Query: 322 IRRLHHALLEIHVEEGTLVCPDSGRSFPILKGVPNML 212
           +R  HH L+ I V +G L+CP++   FPI  G+PNML
Sbjct: 83  LRVFHHLLMNIDVIDGELICPETKTVFPIRDGIPNML 119

>U315_NEUCR (Q8X0S4) Hypothetical UPF0315 protein 18F11.160|
          Length = 127

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = -2

Query: 466 LRGILPKIDWRALFAATSAAGXXXXXXXXXXXXXXXXXEGAADVEGSAIRRLHHALLEIH 287
           L  +LP+IDW AL   ++  G                       + + ++ LH  L+E  
Sbjct: 44  LINVLPRIDWAALRTTSTELGFPTLPEQPPSPEDLQS-------DEALLKELHELLMETQ 96

Query: 286 VEEGTLVCPDSGRSFPILKGVPNMLL 209
           + EG LVC   G  + +  GV N LL
Sbjct: 97  MMEGKLVCGHCGHEYAVKNGVANFLL 122

>YN8Q_YEAST (P53738) UPF0315 protein YNR046w|
          Length = 135

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = -2

Query: 466 LRGILPKIDWRALFAATSAAGXXXXXXXXXXXXXXXXXEGAADVEGSAIRRLHHALLEIH 287
           L  I+ ++DW A+   T AA                  +   D + + +  LH  LL+  
Sbjct: 47  LLNIVDRVDWPAVL--TVAAELGNNALPPTKPSFPSSIQELTDDDMAILNDLHTLLLQTS 104

Query: 286 VEEGTLVCPDSGRSFPILKGVPNMLL 209
           + EG + C + G  + I  G+PN+LL
Sbjct: 105 IAEGEMKCRNCGHIYYIKNGIPNLLL 130

>ZG46_XENLA (P18722) Gastrula zinc finger protein XLCGF46.1 (Fragment)|
          Length = 280

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 292 IHVEEGTLVCPDSGRSFPILKGVPNMLL 209
           IH EE   VCP+ G+ +   +G+ N LL
Sbjct: 55  IHTEETPFVCPECGQGYKSKQGLQNHLL 82

>TYSY_XYLFT (Q87BT4) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 307 HALLEIHVEEGTLVCPDSGRSFPILKGVPNMLLHEDEVRH*LASIT 170
           HAL + +V  G L C    RS  I  GVP  +     + H LA +T
Sbjct: 147 HALFQFYVANGKLSCQLYQRSADIFLGVPFNIASYALLTHMLAQVT 192

>TYSY_XYLFA (Q9PB13) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 307 HALLEIHVEEGTLVCPDSGRSFPILKGVPNMLLHEDEVRH*LASIT 170
           HAL + +V  G L C    RS  I  GVP  +     + H LA +T
Sbjct: 147 HALFQFYVANGKLSCQLYQRSADIFLGVPFNIASYALLTHMLAQVT 192

>TYSY_BACHD (Q9K7B5) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 346 AADVEGSAIRRLHHALLEIHVEEGTLVCPDSGRSFPILKGVP 221
           AA++E  A+   H  L + +V++G L C    RS  I  GVP
Sbjct: 135 AAEIEDMALAPCH-CLFQFYVQDGKLSCQLYQRSADIFLGVP 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,292,023
Number of Sequences: 219361
Number of extensions: 722032
Number of successful extensions: 2314
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2311
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)