ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8) 32 0.71
2COX3_LEITA (P14546) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) ... 29 6.0
3TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein... 29 7.8
4TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48) 29 7.8
5SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2 29 7.8

>TA2R8_PAPHA (Q646G4) Taste receptor type 2 member 8 (T2R8)|
          Length = 309

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
 Frame = -1

Query: 208 LSAFDCRVCALLFARICLVSACVVD-VRVIMYCCLYAFVEI*RVL------LNFLQIFFS 50
           +S  DC +  L+ +RICL+S  VV+ + +++Y  +Y   ++  V+       N+L ++F+
Sbjct: 41  ISTIDCILTNLVISRICLISVMVVNGIVIVLYPDVYTKTKLQIVICTFWTFANYLNMWFT 100

Query: 49  TSCTVY 32
               V+
Sbjct: 101 ACLNVF 106



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>COX3_LEITA (P14546) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 284

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
 Frame = -1

Query: 199 FDCRVCALLFARICLVSACVVD-----------VRVIMYCCLYAFVEI*RVLLNFLQIFF 53
           F C    LLF  +CL+    VD           +R I YC ++  +     LL FL +F+
Sbjct: 46  FICFFACLLFCLVCLLCDLFVDSLRGLFDVCCFIRCIQYCFVWFIIS---ELLLFLSLFY 102

Query: 52  STSCTVYLCYSELGTVF 2
                V     E   VF
Sbjct: 103 VVFSLVLFVSVEFAFVF 119



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>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 955

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 148 HSLNRSAQKAEHTHGNQKQRATDTRTRRQSADHS 249
           HS  RSA+K E TH   K++    R R +S   S
Sbjct: 748 HSRERSAEKTEKTHKGSKKQKKHRRARDRSRSSS 781



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>TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48)|
          Length = 541

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 97  QKRIDNNT*SHGHPLHKHSLNRSAQKAEHTHGNQKQRATDT 219
           QKRI+    +HG   H H    S Q+  H H    Q  T T
Sbjct: 171 QKRINRKRKNHGGSAHGHHSLTSQQQQSHPHPTTPQTPTAT 211



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>SPP2_NEUCR (Q7SBU7) Pre-mRNA-splicing factor spp-2|
          Length = 358

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 157 NRSAQKAEHTHGNQKQRATD--TRTRRQSADHSXXXXXXXXXPWCCDE-ETAPPRW 315
           NRS  +  H + + +    D  +R+RR+S   S         P    E ETAPP+W
Sbjct: 114 NRSQDRDRHNNRSSRPSRDDDASRSRRRSTSRSRDRDHKPKDPKDLQEPETAPPKW 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,776,709
Number of Sequences: 219361
Number of extensions: 971906
Number of successful extensions: 2997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2990
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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