>RSBQ_BACSU (O07015) Sigma factor sigB regulation protein rsbQ|
          Length = 269

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 489 DLRGVLGMVQAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTIEPLPTEGHLPHLSAP 319
           D R  L  V  P +++Q   D+  PA+V  Y+  HL   ++++ +   GH PH+S P
Sbjct: 199 DHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP-YSSLKQMEARGHCPHMSHP 254

>LONH1_THEAC (Q9HJ89) Putative protease La homolog type 1 (EC 3.4.21.-)|
          Length = 657

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 257 KKERGKKLLHLDLHVEYVGGTRGREGHAKS 168
           KK  GK + ++D+H+++VG   G EG + S
Sbjct: 498 KKLTGKDISNMDIHIQFVGTYEGVEGDSAS 527

>LONH1_THEVO (P58274) Putative protease La homolog type 1 (EC 3.4.21.-)|
          Length = 655

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 257 KKERGKKLLHLDLHVEYVGGTRGREGHAKS 168
           KK  GK + ++D+H+++VG   G EG + S
Sbjct: 498 KKITGKDISNMDIHIQFVGTYEGVEGDSAS 527

>VINT_BPMFR (P25426) Integrase|
          Length = 333

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 444 VQTTRDVSVPASVAAYLKAHLGGRTTIEPLP 352
           V++ R V+VP  VAA ++AH+  RT +   P
Sbjct: 208 VRSKRPVTVPPHVAAMIRAHMADRTKMNKGP 238

>LONH_ARCFU (O29883) Putative protease La homolog type (EC 3.4.21.-)|
          Length = 621

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 257 KKERGKKLLHLDLHVEYVGGTRGREGHAKS 168
           KK  G+ + ++D+H+++VG   G EG + S
Sbjct: 482 KKYTGRDISNMDVHIQFVGTYEGVEGDSAS 511


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,402,603
Number of Sequences: 219361
Number of extensions: 900193
Number of successful extensions: 2747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2747
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)