ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.2
2gb|AC139939.6| Mus musculus chromosome 1, clone RP23-458O23, com... 40 4.9
3emb|AL590226.23| Human DNA sequence from clone RP11-251M1 on chr... 40 4.9
4emb|BX294018.1|NCB8P8 Neurospora crassa DNA linkage group V BAC ... 40 4.9
5gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, comp... 40 4.9
6gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosom... 40 4.9
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
9dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
10dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
11dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
12emb|AL929264.4| Zebrafish DNA sequence from clone CH211-59C24 in... 40 4.9

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 250     ccgtatcgacgccgtcggccggtgc 274
               |||||||||||||| ||||||||||
Sbjct: 2740212 ccgtatcgacgccggcggccggtgc 2740188



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>gb|AC139939.6| Mus musculus chromosome 1, clone RP23-458O23, complete sequence
          Length = 175033

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    actatctctctacttctctg 307
              ||||||||||||||||||||
Sbjct: 112899 actatctctctacttctctg 112918



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>emb|AL590226.23| Human DNA sequence from clone RP11-251M1 on chromosome 9 Contains a
             novel gene, the gene for  NEU1 protein (ZNEU1), the AGPAT2
             gene for 1-acylglycerol-3-phosphate O-acyltransferase 2
             (lysophosphatidic acid acyltransferase, beta), the 5' end
             of the gene for a novel protein similar to mouse
             pancreatitis-induced protein 49 (PIP49), the 3' end of a
             novel gene (FLJ30346) and seven CpG islands, complete
             sequence
          Length = 149567

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   tctgcagagccggggcccca 323
             ||||||||||||||||||||
Sbjct: 71154 tctgcagagccggggcccca 71135



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>emb|BX294018.1|NCB8P8 Neurospora crassa DNA linkage group V BAC clone B8P8
          Length = 75910

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    catcatcatccatcatgcag 105
             ||||||||||||||||||||
Sbjct: 17454 catcatcatccatcatgcag 17435



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>gb|AC087373.4| Homo sapiens chromosome 11, clone RP11-54J7, complete sequence
          Length = 200604

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   ctatctctctacttctctgc 308
             ||||||||||||||||||||
Sbjct: 15045 ctatctctctacttctctgc 15064



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>gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosome 14, complete
            sequence
          Length = 209322

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   atatacacagtacaaaacct 75
            ||||||||||||||||||||
Sbjct: 2359 atatacacagtacaaaacct 2378



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 164      gctgctactgcttcttcact 183
                ||||||||||||||||||||
Sbjct: 16801183 gctgctactgcttcttcact 16801164



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 156      tggagctagctgctactgct 175
                ||||||||||||||||||||
Sbjct: 38661393 tggagctagctgctactgct 38661374



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>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1099D03
          Length = 191022

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    tggagctagctgctactgct 175
              ||||||||||||||||||||
Sbjct: 119366 tggagctagctgctactgct 119347



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>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1115_C05
          Length = 146585

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    gctgctactgcttcttcact 183
              ||||||||||||||||||||
Sbjct: 141095 gctgctactgcttcttcact 141076



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>dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1103_E04
          Length = 111354

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gctgctactgcttcttcact 183
             ||||||||||||||||||||
Sbjct: 17750 gctgctactgcttcttcact 17731



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>emb|AL929264.4| Zebrafish DNA sequence from clone CH211-59C24 in linkage group 18,
            complete sequence
          Length = 171914

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   atatacacagtacaaaacct 75
            ||||||||||||||||||||
Sbjct: 5200 atatacacagtacaaaacct 5181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,967,531
Number of Sequences: 3902068
Number of extensions: 2967531
Number of successful extensions: 52235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52148
Number of HSP's gapped (non-prelim): 87
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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