>TTC1_MOUSE (Q91Z38) Tetratricopeptide repeat protein 1 (TPR repeat protein 1)|
          Length = 292

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = -3

Query: 496 VLGRFGMSVDNFKAVKDPNTGSYSVSF 416
           VL  FG+S +NF+  +D +TGSYS++F
Sbjct: 258 VLRPFGLSTENFQIKQDSSTGSYSINF 284

>TTC1_HUMAN (Q99614) Tetratricopeptide repeat protein 1 (TPR repeat protein 1)|
          Length = 292

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = -3

Query: 496 VLGRFGMSVDNFKAVKDPNTGSYSVSF 416
           VL  FG+S +NF+  +D +TGSYS++F
Sbjct: 258 VLRPFGLSTENFQIKQDSSTGSYSINF 284

>MVIN_RHITR (O05467) Virulence factor mviN homolog|
          Length = 533

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = -3

Query: 184 AAQAP---SLFL*TALHFSLFFNMDPLSVAQLLSWQILV 77
           AA AP   +L + +AL ++++F  DPL+ A  LSW +LV
Sbjct: 161 AAVAPIFLNLVMISALFYAIYFGADPLTTAWYLSWSVLV 199

>L_MABVP (P35262) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2331

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 213 AFMYDARVHLLPRHQVCFCKRLFIFPYFLTWIHYLLPNCF 94
           AF Y+       RH + +C R +       W+H+L+P C+
Sbjct: 642 AFRYE-----FTRHFIDYCNRCYGVKNLFDWMHFLIPLCY 676

>L_MABVM (P31352) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2331

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 213 AFMYDARVHLLPRHQVCFCKRLFIFPYFLTWIHYLLPNCF 94
           AF Y+       RH + +C R +       W+H+L+P C+
Sbjct: 642 AFRYE-----FTRHFIDYCNRCYGVKNLFDWMHFLIPLCY 676

>1A43_HUMAN (P30456) HLA class I histocompatibility antigen, A-43 alpha chain|
           precursor (MHC class I antigen A*43) (Aw-43)
          Length = 365

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 225 IKSKNDQAHLQIERSNCKSARPLHNLSRTIATMIERMY 338
           ++++N +AH Q +R+N  + R  +N S   +  I+RMY
Sbjct: 86  LQTRNVKAHSQTDRANLGTLRGYYNQSEDGSHTIQRMY 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,694,131
Number of Sequences: 219361
Number of extensions: 1560909
Number of successful extensions: 3510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3510
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)