ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197088.1| Oryza sativa (japonica cultivar-group) putative... 88 3e-14
2gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 88 3e-14
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
4dbj|AK063937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
6gb|AY106661.1| Zea mays PCO108608 mRNA sequence 58 3e-05
7emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 50 0.007
8gb|AC153007.4| Mus musculus BAC clone RP24-266E2 from chromosome... 46 0.11
9gb|AC124485.3| Mus musculus BAC clone RP23-450J12 from chromosom... 46 0.11
10emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chr... 42 1.7
11gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, compl... 42 1.7
12gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, comp... 42 1.7
13gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, comp... 42 1.7
14gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum)... 42 1.7
15emb|BX005423.9| Zebrafish DNA sequence from clone DKEY-243E1 in ... 42 1.7
16emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c2... 42 1.7
17gb|L43549.1|BUHTPIA Buchnera aphidicola aspartyl-tRNA synthetase... 42 1.7
18gb|AE017263.1| Mesoplasma florum L1 complete genome 40 6.7
19gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chrom... 40 6.7
20gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.7
21gb|AC133681.2| Homo sapiens 3 BAC RP11-88I21 (Roswell Park Cance... 40 6.7
22gb|AC146751.10| Medicago truncatula clone mth2-60a22, complete s... 40 6.7
23emb|AL672061.2| Human DNA sequence from clone RP11-101C11 on chr... 40 6.7
24emb|AL441927.10| Human DNA sequence from clone RP1-294P19 on chr... 40 6.7
25emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chr... 40 6.7
26emb|AL135910.22| Human DNA sequence from clone RP3-405B13 on chr... 40 6.7
27gb|AC026353.12| Homo sapiens 3 RP11-298O21 (Roswell Park Cancer ... 40 6.7
28gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromo... 40 6.7
29gb|AC151458.27| Medicago truncatula clone mth2-105a19, complete ... 40 6.7
30emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 40 6.7
31gb|AC114929.2| Homo sapiens chromosome 5 clone CTD-2013M11, comp... 40 6.7
32gb|AC093166.6| Homo sapiens BAC clone RP11-1429F20 from 2, compl... 40 6.7
33gb|AC093531.2| Homo sapiens chromosome 5 clone RP11-405L7, compl... 40 6.7
34gb|AC083899.6| Homo sapiens BAC clone RP11-223J6 from 2, complet... 40 6.7
35emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in ... 40 6.7
36gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome 40 6.7
37gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complet... 40 6.7
38emb|AL807762.9| Mouse DNA sequence from clone RP23-48F4 on chrom... 40 6.7
39emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on ch... 40 6.7
40gb|AC134027.2| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Canc... 40 6.7
41emb|AL732447.9| Mouse DNA sequence from clone RP23-142F14 on chr... 40 6.7 
>ref|NM_197088.1| Oryza sativa (japonica cultivar-group) putative tetratricopeptide
            repeat protein (OSJNBa0029C15.16), mRNA
          Length = 1647

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 413  ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 472
            |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 1641 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 1582

                                    
Query: 473  gctcataccaaaccgccccagcac 496
            |||||| ||||| ||||| |||||
Sbjct: 1581 gctcatcccaaagcgcccgagcac 1558
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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
             sequence
          Length = 148816

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Plus

                                                                         
Query: 413   ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 472
             |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 22138 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 22197

                                     
Query: 473   gctcataccaaaccgccccagcac 496
             |||||| ||||| ||||| |||||
Sbjct: 22198 gctcatcccaaagcgcccgagcac 22221
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                            
Query: 413      ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 472
                |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 17909903 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 17909844

                                        
Query: 473      gctcataccaaaccgccccagcac 496
                |||||| ||||| ||||| |||||
Sbjct: 17909843 gctcatcccaaagcgcccgagcac 17909820
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>dbj|AK063937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D11, full
           insert sequence
          Length = 1188

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                       
Query: 413 ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 472
           |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 903 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 844

                                   
Query: 473 gctcataccaaaccgccccagcac 496
           |||||| ||||| ||||| |||||
Sbjct: 843 gctcatcccaaagcgcccgagcac 820
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                            
Query: 413      ctggaaagaaacggagtacgagcccgtgtttggatccttgacagctttgaaattgtccac 472
                |||||| |||| |||||||||||| |||||||| || || ||||||||||||||||| ||
Sbjct: 17919156 ctggaacgaaatggagtacgagcctgtgtttgggtctttaacagctttgaaattgtcgac 17919097

                                        
Query: 473      gctcataccaaaccgccccagcac 496
                |||||| ||||| ||||| |||||
Sbjct: 17919096 gctcatcccaaagcgcccgagcac 17919073
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>gb|AY106661.1| Zea mays PCO108608 mRNA sequence
          Length = 414

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 432 gagcccgtgtttggatccttgacagctttgaaattgtccacgctcataccaaaccgcccc 491
           ||||| |||||||| || |||||||||||||||||||| || ||||| || || || |||
Sbjct: 169 gagccagtgtttgggtctttgacagctttgaaattgtcaacactcatcccgaagcggccc 228

                
Query: 492 agcac 496
           |||||
Sbjct: 229 agcac 233
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>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 127    taaaaaataaggaaaaatgaagagc 151
              |||||||||||||||||||||||||
Sbjct: 186289 taaaaaataaggaaaaatgaagagc 186313
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>gb|AC153007.4| Mus musculus BAC clone RP24-266E2 from chromosome 8, complete sequence
          Length = 174101

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 154   tttacaaaaacaaacttggtgcc 176
             |||||||||||||||||||||||
Sbjct: 81888 tttacaaaaacaaacttggtgcc 81910
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>gb|AC124485.3| Mus musculus BAC clone RP23-450J12 from chromosome 8, complete sequence
          Length = 198254

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 154   tttacaaaaacaaacttggtgcc 176
             |||||||||||||||||||||||
Sbjct: 63856 tttacaaaaacaaacttggtgcc 63878
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>emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chromosome X Contains part
              of the SH3KBP1 gene for SH3-domain kinase binding protein 1
              (CIN85), complete sequence
          Length = 190325

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 140    aaaatgaagagccgtttacaaaaac 164
              ||||||| |||||||||||||||||
Sbjct: 126634 aaaatgaggagccgtttacaaaaac 126658
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>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence
          Length = 180483

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 316    ccaccatgattgaaaggatgt 336
              |||||||||||||||||||||
Sbjct: 157872 ccaccatgattgaaaggatgt 157852
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>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence
          Length = 165675

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 316   ccaccatgattgaaaggatgt 336
             |||||||||||||||||||||
Sbjct: 32358 ccaccatgattgaaaggatgt 32338
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>gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, complete sequence
          Length = 139939

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 316   ccaccatgattgaaaggatgt 336
             |||||||||||||||||||||
Sbjct: 37593 ccaccatgattgaaaggatgt 37613
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>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome
          Length = 641454

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    ttaaaaaataaggaaaaatga 146
              |||||||||||||||||||||
Sbjct: 340683 ttaaaaaataaggaaaaatga 340663
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>emb|BX005423.9| Zebrafish DNA sequence from clone DKEY-243E1 in linkage group 8,
             complete sequence
          Length = 68421

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 148   gagccgtttacaaaaacaaac 168
             |||||||||||||||||||||
Sbjct: 41860 gagccgtttacaaaaacaaac 41880
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>emb|CT025839.2| Medicago truncatula chromosome 5 clone mth4-19c21, COMPLETE SEQUENCE
          Length = 210117

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    tgttaaaaaataaggaaaaat 144
              |||||||||||||||||||||
Sbjct: 157008 tgttaaaaaataaggaaaaat 157028
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>gb|L43549.1|BUHTPIA Buchnera aphidicola aspartyl-tRNA synthetase (aspS), thioredoxin
             reductase (trxB), seryl-tRNA synthase (serS),
             phosphoserine aminotransferase (serC),
             3-enolpyruvylshikimate-5-phosphate synthetase (aroA),
             ribosomal protein S1 (rpsA), integration host factor beta
             subunit (himD), and triosephosphate isomerase (tpiA)
             genes, complete cds
          Length = 11479

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   ttaaaaaataaggaaaaatga 146
             |||||||||||||||||||||
Sbjct: 11384 ttaaaaaataaggaaaaatga 11404
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>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    aaataaggaaaaatgaagag 150
              ||||||||||||||||||||
Sbjct: 516023 aaataaggaaaaatgaagag 516004
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>gb|AC182584.3| Pan troglodytes BAC clone CH251-530K15 from chromosome 2, complete
             sequence
          Length = 206103

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   tataattcattatatatgct 399
             ||||||||||||||||||||
Sbjct: 92278 tataattcattatatatgct 92297
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>gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-298M8, complete
             sequence
          Length = 237142

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 126   ttaaaaaataaggaaaaatgaaga 149
             ||||||||||||| ||||||||||
Sbjct: 25286 ttaaaaaataaggcaaaatgaaga 25309
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>gb|AC133681.2| Homo sapiens 3 BAC RP11-88I21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114998

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   aaaaaataaggaaaaatgaa 147
             ||||||||||||||||||||
Sbjct: 82074 aaaaaataaggaaaaatgaa 82055
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>gb|AC146751.10| Medicago truncatula clone mth2-60a22, complete sequence
          Length = 119297

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aggacaaataaaaccatgag 57
             ||||||||||||||||||||
Sbjct: 75991 aggacaaataaaaccatgag 75972
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>emb|AL672061.2| Human DNA sequence from clone RP11-101C11 on chromosome 1 Contains
            the 3' end of a novel gene, complete sequence
          Length = 91448

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 378  tgtataattcattatatatg 397
            ||||||||||||||||||||
Sbjct: 2084 tgtataattcattatatatg 2103
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>emb|AL441927.10| Human DNA sequence from clone RP1-294P19 on chromosome 6, complete
            sequence
          Length = 67605

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   agccaatttctttgttcctt 35
            ||||||||||||||||||||
Sbjct: 5627 agccaatttctttgttcctt 5646
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>emb|AL158154.28| Human DNA sequence from clone RP11-383M4 on chromosome 9 Contains two
             novel genes and three putative novel pseudogenes, complete
             sequence
          Length = 189319

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   catgttaaaaaataaggaaa 141
             ||||||||||||||||||||
Sbjct: 65972 catgttaaaaaataaggaaa 65991
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>emb|AL135910.22| Human DNA sequence from clone RP3-405B13 on chromosome 6, complete
            sequence
          Length = 42938

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   agccaatttctttgttcctt 35
            ||||||||||||||||||||
Sbjct: 6838 agccaatttctttgttcctt 6819
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>gb|AC026353.12| Homo sapiens 3 RP11-298O21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138312

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    ttaaaaaataaggaaaaatg 145
              ||||||||||||||||||||
Sbjct: 115629 ttaaaaaataaggaaaaatg 115648
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>gb|AC183099.3| Pan troglodytes BAC clone CH251-727F5 from chromosome 2, complete
             sequence
          Length = 183714

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   tataattcattatatatgct 399
             ||||||||||||||||||||
Sbjct: 48623 tataattcattatatatgct 48642
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>gb|AC151458.27| Medicago truncatula clone mth2-105a19, complete sequence
          Length = 109617

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tgttaaaaaataaggaaaaa 143
             ||||||||||||||||||||
Sbjct: 31724 tgttaaaaaataaggaaaaa 31743
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>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
             complete sequence
          Length = 262038

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ttaaaaaataaggaaaaatg 145
             ||||||||||||||||||||
Sbjct: 40791 ttaaaaaataaggaaaaatg 40810
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>gb|AC114929.2| Homo sapiens chromosome 5 clone CTD-2013M11, complete sequence
          Length = 101894

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  ttaaaaaataaggaaaaatg 145
            ||||||||||||||||||||
Sbjct: 3077 ttaaaaaataaggaaaaatg 3058
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>gb|AC093166.6| Homo sapiens BAC clone RP11-1429F20 from 2, complete sequence
          Length = 213865

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    tataattcattatatatgct 399
              ||||||||||||||||||||
Sbjct: 118973 tataattcattatatatgct 118992
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>gb|AC093531.2| Homo sapiens chromosome 5 clone RP11-405L7, complete sequence
          Length = 163803

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    ttaaaaaataaggaaaaatg 145
              ||||||||||||||||||||
Sbjct: 146693 ttaaaaaataaggaaaaatg 146674
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>gb|AC083899.6| Homo sapiens BAC clone RP11-223J6 from 2, complete sequence
          Length = 153666

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   tataattcattatatatgct 399
             ||||||||||||||||||||
Sbjct: 21889 tataattcattatatatgct 21870
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>emb|AL954317.8| Zebrafish DNA sequence from clone DKEY-251I8 in linkage group 1,
             complete sequence
          Length = 97165

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   gccatgtttgtctgtataat 385
             ||||||||||||||||||||
Sbjct: 33275 gccatgtttgtctgtataat 33256
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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 24     tctttgttccttgtaggacaaata 47
              |||||||||||||| |||||||||
Sbjct: 278953 tctttgttccttgtgggacaaata 278930
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>gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complete sequence
          Length = 188083

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    aaaataaggaaaaatgaaga 149
              ||||||||||||||||||||
Sbjct: 133559 aaaataaggaaaaatgaaga 133578
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>emb|AL807762.9| Mouse DNA sequence from clone RP23-48F4 on chromosome 4, complete
              sequence
          Length = 264321

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    aggagaataaagtccaagaa 238
              ||||||||||||||||||||
Sbjct: 112692 aggagaataaagtccaagaa 112673
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>emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on chromosome 4, complete
             sequence
          Length = 208396

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   gttaaaaaataaggaaaaat 144
             ||||||||||||||||||||
Sbjct: 92409 gttaaaaaataaggaaaaat 92428
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>gb|AC134027.2| Homo sapiens 3 BAC RP11-358B24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139300

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aaaaaataaggaaaaatgaa 147
             ||||||||||||||||||||
Sbjct: 12483 aaaaaataaggaaaaatgaa 12502
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>emb|AL732447.9| Mouse DNA sequence from clone RP23-142F14 on chromosome 2, complete
             sequence
          Length = 154433

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   gtgcatcatacatgaaagca 214
             ||||||||||||||||||||
Sbjct: 60355 gtgcatcatacatgaaagca 60336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,804,385
Number of Sequences: 3902068
Number of extensions: 5804385
Number of successful extensions: 116907
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116695
Number of HSP's gapped (non-prelim): 212
length of query: 498
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 476
effective length of database: 17,147,199,772
effective search space: 8162067091472
effective search space used: 8162067091472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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