ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart11e08 |
|---|---|
| Clone Library Name | barley_pub |
>PSB5A_ARATH (O23717) Proteasome subunit beta type 5-A precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-1) (Proteasome epsilon-1 chain) (Proteasome component E) Length = 274 Score = 94.7 bits (234), Expect = 1e-19 Identities = 43/55 (78%), Positives = 45/55 (81%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHYYPVQAAPVEQEMAEA 366 IYHATFRD ASGG SVY+VGP+GW KLSGDDVGELHYHYYPV A EQ M EA Sbjct: 217 IYHATFRDGASGGVASVYHVGPEGWTKLSGDDVGELHYHYYPVAPATAEQVMEEA 271
>PSB5_SPIOL (O24361) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (20S proteasome subunit E) (Proteasome epsilon chain) Length = 272 Score = 94.4 bits (233), Expect = 2e-19 Identities = 42/58 (72%), Positives = 48/58 (82%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHYYPVQAAPVEQEMAEAPSA 357 IYHAT+RD ASGG VSVY+VGPDGWKK++GDDVG+LH+ YYPV A VEQEM E A Sbjct: 215 IYHATYRDGASGGVVSVYHVGPDGWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272
>PSB5B_ARATH (Q9LIP2) Proteasome subunit beta type 5-B precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-2) (Proteasome epsilon-2 chain) Length = 273 Score = 90.1 bits (222), Expect = 3e-18 Identities = 41/55 (74%), Positives = 42/55 (76%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHYYPVQAAPVEQEMAEA 366 IYHATFRD ASGG SVY+VGP GW KLSGDDVGELHYHYYPV E M EA Sbjct: 217 IYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELHYHYYPVAPITAEHVMEEA 271
>PSB5_HUMAN (P28074) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) (Proteasome subunit MB1) Length = 208 Score = 50.4 bits (119), Expect = 3e-06 Identities = 21/40 (52%), Positives = 29/40 (72%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHY 411 IY AT+RD SGG V++Y+V DGW ++S D+V +LH Y Sbjct: 164 IYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKY 203
>PSB5_MOUSE (O55234) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 209 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/43 (51%), Positives = 30/43 (69%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHYYPV 402 IY AT+RD SGG V++Y+V DGW ++S D+V +LH Y V Sbjct: 164 IYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYSSV 206
>PSB5_RAT (P28075) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 208 Score = 50.1 bits (118), Expect = 4e-06 Identities = 21/40 (52%), Positives = 29/40 (72%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHY 411 IY AT+RD SGG V++Y+V DGW ++S D+V +LH Y Sbjct: 164 IYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKY 203
>PSB5_CHICK (P34065) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome chain 1) (Macropain chain 1) (Multicatalytic endopeptidase complex chain 1) (Proteasome subunit C1) (Fragment) Length = 256 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/40 (52%), Positives = 27/40 (67%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHY 411 I+ A RD SGG V+VY+VGP GW+++S DV LH Y Sbjct: 215 IFQAARRDAYSGGSVTVYHVGPRGWRRVSSHDVAGLHDGY 254
>PSB8_MOUSE (P28063) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/40 (47%), Positives = 26/40 (65%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHY 411 I +AT RD SGG V++Y++ DGW K+ DV +L Y Y Sbjct: 232 IAYATHRDNYSGGVVNMYHMKEDGWVKVESSDVSDLLYKY 271
>PSB8_CANFA (Q5W416) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 42.7 bits (99), Expect = 6e-04 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHY 411 I +AT RD SGG +++Y++ DGW K+ DV EL + Y Sbjct: 232 ITYATHRDSYSGGIINMYHMKEDGWVKVESTDVNELLHQY 271
>PSB8_RAT (P28064) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHY 411 I +AT RD SGG V++Y++ DGW K+ DV +L + Y Sbjct: 232 IVYATHRDSYSGGVVNMYHMKKDGWVKVESTDVSDLLHKY 271
>PSB8_HUMAN (P28062) Proteasome subunit beta type 8 precursor (EC 3.4.25.1)| (Proteasome component C13) (Macropain subunit C13) (Multicatalytic endopeptidase complex subunit C13) Length = 276 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/40 (45%), Positives = 26/40 (65%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHYHY 411 I +AT RD SGG V++Y++ DGW K+ DV +L + Y Sbjct: 232 IAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQY 271
>PSB5_YEAST (P30656) Proteasome component PRE2 precursor (EC 3.4.25.1)| (Macropain subunit PRE2) (Proteinase YSCE subunit PRE2) (Multicatalytic endopeptidase complex subunit PRE2) Length = 287 Score = 36.6 bits (83), Expect = 0.044 Identities = 18/38 (47%), Positives = 22/38 (57%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGELHY 417 I A RD SGG V++Y+V DGW DVGEL + Sbjct: 236 ILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFW 273
>PSB5_SCHPO (P30655) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome component pts1) (Macropain subunit pts1) (Multicatalytic endopeptidase complex subunit pts1) Length = 272 Score = 30.8 bits (68), Expect = 2.4 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -3 Query: 530 IYHATFRDEASGGCVSVYYVGPDGWKKLSGDDVGEL 423 I AT RD SGG V++Y++ +GW DV L Sbjct: 221 IVAATHRDAYSGGSVNLYHIDENGWVFHGNFDVDSL 256
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 28.9 bits (63), Expect = 9.2 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +2 Query: 245 KSEENTLMSRRRQTGPKSIKQGASAQFTGFRTTLV--RLTQKGPRPSLARREPPGLGSSG 418 +S++ ++S + PKS Q S +TT+ +++Q+ P P + PGL S Sbjct: 217 RSQKLGVLSSSQNGSPKSAGQTQSLTICHNKTTVTSSKISQRDPSPESKKGGSPGLESRS 276 Query: 419 NAALR 433 A R Sbjct: 277 TAVTR 281
>BTC_HUMAN (P35070) Betacellulin precursor (BTC)| Length = 178 Score = 28.9 bits (63), Expect = 9.2 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -1 Query: 511 VMKLVVAVLVSTTSALTAGRSCPEMMSESCITTTTQSRRLPSSKRWPR 368 ++ VVA ST S T G C + E+C TTTQS+R R P+ Sbjct: 25 ILHCVVADGNSTRSPETNGLLCGDP-EENCAATTTQSKRKGHFSRCPK 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,086,726 Number of Sequences: 219361 Number of extensions: 1310194 Number of successful extensions: 3454 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3385 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3453 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
